Map Locations of contig_51304 (6972 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_51304

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_66259 6 1364 bp AK366942 Available Available None





CDS Structure of MLOC_66259






Contig Sequence (6972 bp)

>contig_51304 6972 assembly3_WGSMorex_rbca.fasta
AGTTGGAATTTATGTAGACAAGGATAGTACACTACGAAAGAATGGCTACATATTCTGCTT
GTTCTTGAGCGCATGGTTTATGTGCAGAAGCCACATTTCTCAACAGTACACTTTACTGGT
AAACTATCAAGGAACTAGACTTAACAAGTAATTTCACAAAACACACTTTTTTGTGTATCA
TGATTTCAGAAAACTACACCTCTTTATGATTACAACGGAACTGGCAGGTTTGCCCCCACC
CATCAGTCACAAGCACAAGTGTCCATGAACATGAAAAAGTTGCACCTATTCCATTTTATG
ATGATGTGGCTGACGGGTGGGAAATACCTGTTGGTTTTGTTGAAATTCCAAATAATCGCT
TTCTGTATGAAACCGAAATGGGGTGATTCTGTAGGCTATTTTCAAATGTGCAGTTCTTTG
ATAATATGTCCAAAAAAAGGTCTGGTACTAGAAAATTTGCTCATTGAACGAATCTTTTTT
AATGCTGCTGCTACTGCTGTTGTTGTCATTGTTTTTGTTACTAGAACTTGTTCTGCCTTC
CAGTTCTCTTATTTTATCCTCAATGATGAGCTGTCTGCAGAATGTTTTCAAACAGCAATG
CCTATCTGAATTGCATGTAAGATGTAACTATGTACTCCCTCCGTTTCTAAATGTAAGTCT
TTGTAGAGATTTCACTAGTGAACTACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAC
ATTCAATCATTTTGCTTCGTACGTAGACATCTAGTGAAATCGCTTAAANNNNNNNNATTT
AGGAACGGAGGGAGTAGCATCTTCAAGCTTCCTTGACAGCTGTGCTATTGACCAAGGATG
GTCTTATTAGCAATAACAAAAGTCCATTGAGTTTGGTTTAAATGTGAAAGAAATAAAGAT
CAGATATTTTTCAAAATTTAAATAAGGTCTCAAATGGGTAGAAGTTAATGCATAGTTACC
TATTTTTCAGGTAATGCTTCACACGGTGGTACTACTTATGTTCACTGTAAAGCTGGAAGA
GGACGAAGCACCACTATTGTTTTGTGCTATTTGGTAAGATAAACTACATACATTTTAAAC
TGAACGTGATAAGTCCCATTGAGTTGCTGACGACAGCTTCTTATCTTCCTTTTCTTCAGA
TCAAATATAGGAACATGACTCCTGAAGCAGCTTTGGATCATGTACGATCCATTAGGCCCC
GAGTGCTTTTGGCACCATCACAGTGGCAGGTATAAGGACTGTTGTCTTTGTGTTTGATAC
AAGCTAATGCTATTGTTAGTCAATCATGCGTCTGCTAAGCTCCTTTCGCCAATGACATGA
TTTTGCAGGCTGTTATCGTATTTAGCACTCTCACCACTGGACGTCTTCCAGTACAGAGTA
CGAATCGAAACTGTTATCTAGAAGGCACCAAAGCCTCCATCCCTGACAGAGATATCGAGG
ACTGCACTATGGAGTTTGATTACGATGACAGCGGTTTACCTCTTTGTCAAGTTATGGTAC
CGAGGCCAAGCAGTCCAACTGGATGTGTCGATGCAGTTTTCATAACAGAAGCAGATCTGG
AGGGCTACGATGCATACATTGATACTGGGAAGGATGTTGTGTCATTTGAAGTAGTAGCCA
GTCGCAAGCCCATCATGAGGAGACTATCATGCCTCTTTGGATCGTTGAAAGTTACCAGCA
ACTGTGAACCAGCCCCAAGCAGGTTTACTGAGGTTCGTGCCTGCTAGGTAGGCCTGATAC
TAGCTTTACCCAATTTTCTCCATGTTGTGAGTCTGAGATACATGATACTCCATTAGTAGA
TAGGCAGGCAGTCAGCCAGTCAGGCATCGTGGAAACATGGAGGTTTCTACAGCCAAGGCA
AACGCCACCGGGAAGAAGCTTTGTGTGCATAGGGAGTTAAGAGAGTTTAGAGTTGTGAAT
GTGCCGATTGCCTTTTTTTCAGTCGAAAACATGTGGTTTGATTTCACCATTGTTCTTTTT
GGAATAAAAAAATTATCATGTTCGGTCAGTATTTCTGCTAGTTCCTGTCTTTTGGAATAA
AACTTTGTTAACTTATTGCTCCCTCTTCTTGCCTACAAGTAATAGTACTCCAGTGTACCA
TAATTGCATGGTAGTCAAGTAAATCTCTATGCAAATTTTGAAATCTGTTCTCATGTTTAC
ATTCTTCACTTTTGGGATGCCCACTTTTTATGTCGGAATGGACTGTACGTTTGCTTGCAA
CTAATCATTTCATGATGAGGGGAGGGGTTTGAGAGACAGGCAGGAGCCCTTTTCGTGATA
GTAACCGTCGCATCGGACCGATTGCCATAATAATGTTTGTATGGTCGATGAGATAATGTT
TTCTAGAAAATTTTTATGATGGCTTTGAATGATCTCGCGAGATGAAGGGGTTGGAAGTGC
ATAGAGTTCAGCTTGAAGAGAATCGGTTGATGGAAGAGAAGGTGGCTGAGGGGAACTGAT
TGATGGTGTTGGATCCAACATCCAGATCATATAGAGATAACACGATATGATTGCATGCGT
TCTAGGAGGGCATGGAGCGGCCAACACACCAAAGGAGGGGACAACACACATATGGTACTC
AGGACATGTGTTGTGTGCATGTCGGTTGAATGTGTGCATGTTGATTCATCTTTTGTTCAT
GCATTTTTTTCTTCTTAAGAATGCATGCATGATTGCTCTTGATATGGACATATATTCATC
CAACTTGTGAGTTTTAGAAGGGAAAAAAATTGAAGGTTGAGATATAACAACTCTACGTTG
CATGTCGTCACAAAATATGGATTGTTGGCGGATCCAGGTGTGGTATCCTCGTCAAGCAAC
AATATGATGTGGATTAATGTTGCGGTGTGGTATGAACTGCAACAACAGTATCAACACATG
AGGCACTGGATATTAACACTAATCGCCCCCCATGTTAGAACACAAAACACGTGCCAACAT
GGTGGAGCCATGAGAGAAATGGAGGGTGTACGCACCTCGAAAAAAAACCTCAACCTGATT
CTTTAGGCTAAATTGGTACATATTAAAAAAATCTTTAAATTCTGGATGGGCCACGGCCCA
CTGTGACTACACATTGGCTCGGACACTGCGTGTGAAATCATTAATTAGGAAGTACTCTTT
TCAAAGATCACTTCCACCTTCCTAGATTGCGACAAGTGGTGTACTCCATGCGTGCTACTT
GTCGCAACCTGAGAGTTTTTTTCTTCGTAAATTCGTATTTTTAAAACGTTCTATCTCCTA
AACCGTGCATCCTAATCTCGAACCGTTTTCACCGTTGAATTTCTCGCGTTGAGATCTTCA
AAACTAGATACCGTGTTGACAGGTTTTGATAAACTTTTCTTATTATGAAAAAAAAGGATC
AAAAAACTGTTCCTCTCGCCATAGAAAACCCCCCCCAGAAAACGCGTTCTTTTCCTTTCC
GACAGGCACAGCCGTGCCTCTCATGAAGGCAAAACCGTGCCTCTCGTGGAAACAAAACCA
TGCCTCTCACGGGAAAAGCGTTATTTTCCCTTTTTGAGAGGCACGGGTGTGCATCTCATG
AAGGCAAAACTGTGCCTCTCGCAGAAATAAAACCATGCCTCTCATGAACCCCCCCCCAGA
AAATGTGTTACTTTTTCGCTTTCAGAGAGGCTCGGCCGTGCCTCTCGCGAAGACAAAACC
TTGCCTCCTACGGAAGCAAAATCGTGCTTTTCGCGGAAGCAAAACTGTGTCTCTCGTTAA
AAAACACGTTTTTTTCGTTTCCGAGAGGCACAGTCGTGCCTCTCGCGATGGCAAAATCGT
GCCTCTTACGGAAGCAAAACCGTGCCTCTCGCGAAACAAACAGAAAACACATTTTTTTTG
CGATTTTTTTAAATTTTTTCCCGTCAAAAAACTGAGAAAGACCGGTGAAAAACCCAAAAA
ATCAAAAATAATAATAATCTAAAAAGCCGAAAATGCGTGCGAAAAAATATAAAAAATAAA
ATCTGGAGGAAGCGCTCAGAGTACGACATGTGGCGGCGGCTGAGAACGCGTCAAGTGGCG
GCATGTGAGAGTGCTTGCTGCGAATCTTCTGAAGGAACACTCGCTAACTAGTGACTCCTC
ACTGCATGCCAACTACCAAAAGTTTACTCAACTACTATGAAAAGTAGCAATATACCATAT
GCTCACATATATCAAAGACTCTGTCATGTTAGAGTTGTACACAACAATAAGATTAGTGGT
ATAGGTGCTAGAGGTCGAACAATCCCACCAATGATGGTGTAATCAAGCATTGAAGGAGAT
ATCTAAAAAAAGACTTGAGGGAGACTTGAAGTCGAAAAAAGGTTGATCTAAGCTTCATAA
TCTTGAAAATAAGCTCTTTTTGCTTGATGGAAAACTTCTTTACTCAACCTTTCCCAATAT
GTAAGGCACACTTGACTTTGCCCGACCTTTGATGCACACCTTTTATCGTTATCGTATAGG
CCTTGTGGTCAGTGGCGTAGACAGGCTCCGGGCAAGGGGGCATGGCCTCGGGCGTGCGGC
TGATATCCTTTGGTAAATGTAGAGGTTTAAGTACCGTAGCTACTGTAACACAGGCTGTTG
GCTCAGGGCGTGGCTCGCTGCCTACGCCACTGCTTGTGGTGGAACCTATTGACTATGGTT
CAAGTCCTAGACTTCGACACCGGTGCTTGCATTTTTCTGAACTTATTTCAGACTTTTTGA
TGATATCCGTTCAGTGCGAGGAGATGTTTTCACCTGAAAGTGCAATCTTGCTCTTAAGTA
TGTTTAGATATTGATGACAATATACATATAGGAGACTAATCATGTTTCCAAAGTGTATCA
CATGTTTTAGTCCCCCAGAAATCATTGTGTGTGGATTATGGACCTCGTTAAAATGAACAT
AGCTCAAGAACAAAGAAACAAAGAAATATAGGGACCTCGTTTATTCTTGAGTATAGGGAT
CGGGGACCGATGGTGTTTGCAAAAGATAAGTTCAAGTCCAAAATTCTTTGTTTTTTCCAC
AAACACATTATTTGCCTACATTGCACTCCTATACAATGCAAATGCCTCGCCCATACACTT
GCCAAAAGGCACGGGCTCAATACTCCAAGAAAAATCATATGTAGGGCCCATATCCCAGTG
CACCATTCGTGGTGCCATCGGATGTTCGGTTACCACCGGATGCCGGTGCATCACCTAGAC
ACCGGATGTCCAGTTTCCACCGGAAATCTGGCTAAGCCTCAACACAAGCAAAGCCATTCG
GACCGGATGTCTGGTCCTCATCCAACAGAAGGCATGTCATCTGGATTGGACTGCCGGTAC
GCGTCAGATGTCCTGCAGCTTGATGTTCCACCAGATGTCTAGCTCCGAGTATATTCTGCC
CGTGATTCATTATTATCTTGTGTTCAACTTCTAGACAACAAATGTCCAGTGATACACTGG
ATGTCCGGTACTTAACAATCATTACTCACACCAAACGACTATATTTTGTACTACACTATG
GGCGTGTTGGGCTTCCCACCGCTCCACGAGCCAGCTCCTGGAGCTGACGGAGCTGAAGTG
AAAAATCACGGAGCGGAGGAATAGATGCTCCGCAGATTCTTAAATTTCGTGAAGCTGGTG
TATTGCCGAACAGGTCCTATGTATGCCCCTTTACCAATTCATTTGAAAGAACCCTATACC
ACCCAAGTGCTCGCTCTCACTCCCTCCTTCAACAAATCTAGATCCTGAAGAGATTTGTAA
TATTTCTTGAGAGGTTTTCCACCAAGTGATAGATCCACTCTTTCCTGTCTCTTTAGATTT
GAGTAAGTCTTGAGCTTTCCCTTATCGTTCTTGTTACTCTTGGAGGTTGGGGACTCCTAG
AAAGACAAAACAGGCCATGCGAGCCGATACATACATAGAGGATTTCCCCTTTGTATATTA
GGAGGTAGGGCGAGCTACTCCAGCAAAAGCAGGAGGCTAAAGCTTACCATTTTGGTGATA
GGGGATTAATACAGGATCAACGCTGCACGACGAAGGTCATCGTTGAGCCCACGACCGCGT
GACGAAGACCACTTTATCAGGAGAAGACCACCTTTAGTCTGGAAAGGGATGGAACCTTGA
CCCCCTTTAAATTTCCACGTTGTGGATATCCTTTCTTGCTCGTGTTTTCGGGGAAGAGGA
CCAAGGCACCACAAGAGGGACAGGGCCACATCAGTGTAAGGGGGCGAACCATTCTCTCCC
CCAAGAGCCTCCCTGTACCACAACCTCAAGCTCCCCCTTTTTTCCCAAGAAAGAAAATCA
CAAGCAGGAGTAGGGTTTTACGCTCCGGGGCCCTGAACCTGGGTAGCTCGTGTGTCTTCG
TTGTCTCCGATGAGGCGGAGCACACTCACCATCCATCTTGTTGTGTTTGTCGTCGTGTTG
TAGGTCGCAAGCCAAACCCCCAAGCGTTCGAACCCTAGTCCTTGGAGAAACTCGTGGACG
CAGATCCCAGACTTCGACAGTGCCCATCTAGATCCATTTTCGCGTGCGATCACACAGGGC
CTCTACATCAACCTTGTTACTCCCATGGTGATGTGTGAGTACTTCACCATAGACCTATGG
GTCCGTAGTTAGTACCTAGATGGATATCTCTCACTATGTTCTTCTTTGCCATGATCACCG
TGATTCCCGCGATGATCCATCTTATGTAATCACTATGTGCGATGCATTTGTTGGGATCTG
ATGAATTATNNNNTTATGTTCAGATTATTCATGAATAATGTTTGAGTCTTCTCTTACTTC
TTTTATGCATGATTATGATATCTTCATAATTCTCTCTGATCTATTGATTTGGTTTGGCCA
ACTAGAATGATCTAACTTTAGTGTAGACGTGCGTTGTAGTGGGTTAAATCTTGTGGTGCT
CAATCCCAGTGACACAAAGGGGCATGCCATGTATTGTATTGCTGCCACTAAGGATAAAAC
GATGGGGTTCATTCATATTAACTGGATTTACTTTGTCTACATCATGTCCTCCTCCTCCAA
GCATTACTCTGT