Contig Data
morexGenes
Links



Map Locations of contig_51292 (8926 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_51292

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_66252 1 1699 bp MLOC_66252.1 Available Available LOC_Os01g55150.1, FRAME:+2, EVALUE:9e-96, 13101.m05804 protein bZIP transcription factor domain containing protein, expressed





CDS Structure of MLOC_66252






Contig Sequence (8926 bp)

>contig_51292 8926 assembly3_WGSMorex_rbca.fasta
CGGTGCTCACAGGAAGCTCCACCCACGCCTAACCCTCTTTCTCCATCACCGCCGTCGCCA
CCACACCGATGGAGAACGGTGGGAGCTCATCCGGCTCAGGACAAGGTAAAGTAGAGGATT
TGTACCGGATCTATCTATGCCTAGTAGATCCAAGTTCTATCAAAGCCCTATAAACCGAAA
AGGAGGGAGTATCTCATCTTTTAACACGCCTTGAAAAAGGTAAACGACGTTTGAGGACGC
CGACGTCGTCACCGCCTCACCGGCATCGTCTCTAGTCGACTTCACAGCTTTATCCTAGAC
CCGCGCACGACCGCCCAACCAAACCCTCAGAATGGTTCGGCCTAGCCAATGGCCCTTCTG
TCCCAACCGGCCTGCACAACCCAGACATTTCCTGTCACAGCACAACGGTTGGTTCTCAAT
TAGAAGCAAGTACATCGAGGTCAGTGAAGAATGAAGATCACTCAATCAGCACATCTCAAC
TCAAACATGTGTTTACTTGTTCTTGTTGCTGTTTTAAACATGTCATCAGCACGGAGGTCG
GTCCTGCCTTTCGTTTGCGAGATCAGAGATACGCAGCATATAACATCCTTGCAGACATAG
CAAGGGGTTACGTCTGTCAAGAAGTCACTGGGCTAACATTTTGGAGATGTTATTAACAAA
GAGGAAGGGTATAAGGTGTCGTGATAAAGAGAGGGCAGAAGATTCCCGCGTAACATGGAA
GCAGAATTAGACGCGGTGAGATCTCTGATCCCGAGGATTTGCGAACATGCTCCTTCTCTG
ACCAAATGATACGCGCGCACGCAGCTTTCTTTCCGGTGCAAACCAACCTGACAGCAGGCT
GACACGCTTTCCCGCCTGTTCCTTTTCCGTCCATTCCAAATGTCTGACACGATCGAACCA
TGCCATCGGAGTCCGAAACTACTGACGAACGAGAAGAATGTCCATCTCCCTCTCGTAATC
GTTATCGTAATCAGGCAAACACAATCAGCAGCTGCATGCCCGTTAATTCAAGGCGCACAC
GCAGCAGATCAGATCTACTCGTAGCTGCTGCAGCTGACACCCGGCCCGTTTTAGGCGACA
ACGACGGCTACTTGCAGCTCTCGCCATAGATACACAGGCAGCGAGCTAGCAAGTGTGAGG
TAATGATGGGGAGAATGAGATCCATGGACGGACGGACGGACGGACGGATAGATCGATCGA
CAGCGGCACGTGGACGGGGATTCCTGCCCACCTACTAAAAACCGGCTCGCTTAAAACCGT
TCATCCCCACCATCCATCCATCCATCCTTCCCGCGCGCATGCACCACCCCTCCGGCCAAG
CTAGCTGGCTCAGGCTGTCCTCATGTTCCAAAAGTCTCGTCCCATGTGACTCCCCGATTC
CAATTCCCATCAATCTCCACTCCATCCCCCATCAGCCCATCTCACCTCACCCAAGCAAGC
AAAGTGTAGTAGCGAGCGGCGGCCACTCTCTCGATCTATGCCTCGTCTGCTACTTATAAA
ACAAAGCTCTACGCGCGCCGGCACATCGATCGCATTACGCAGCTCGCTGGTTGGTTACGT
TGAGCGGCTAGCTAGCCTTGCCGGAGCTAGCTAGGAGCTACTAGCTGTTGCGCATTGCCG
GGCCAGCTCGTCCGCTCTCGACCGTACGTAATGGCGCAGCTCCCGCCCAAGATCCCGATG
GCTGCCGGGGCGCACCACTGGCCCGGCGCCGGAGCCGGCGTGGAGCACCACGGCCACGGG
CCCGCCGTGGTGTGGGCGGACGAGTTCGCCGAGTTCGCGGCGGCGCGCCGGGGCGCGCAC
CGCAGGTCGCTGAGCGACTCGGTGGCCTTCGTGGAGATGGCTCCCGGGGGCTGCGGCGGG
GCCGGCGACTTCGACAGGCTGGACGACGACCAGCTCATGTCCATGTTCCCCGACGAGGGC
GGGTCGACGGCCCCCGGGTCGGAGAACGGCACCAGCGACAGCGACGGCAAGGAGCGGTAC
GACGACGGGCAGAACGACGATGCTAACCCGGAGGAGCCTGGTGGGCCGGGGCAAGCCACG
CCGACCTCGTCCACGGAGACGATCCGCGACCCCAAGAGGGTCAAGAGGTGCGCGCGCAAT
GCCAATGCCAATGCCGATGCCGATGCATGGATGAGATTCCTTGGTTGATGCATGTGTTGA
TTATCGACCGAATTATGTGTTTCCAGGATACTGGCTAACCGCCAGTCGGCTCAGAGATCT
CGGGTGAGGAAGCTGCAGTACATCTCCGAGCTCGAGCGGTGCGTCACAACGCTGCAGGTA
CATATATACTCACCTGCTGCTAGTGCTATCTAGGAGTAATTGCTTCACTAAGAACAGTCT
AATGGGGCGATCTAGTGCTACTCAATTCTAGTTAGCTAGTCTATAAACAGATCTCAATTC
TAGGGACGATACTTAAAAAGCTGACGATACGTACGCCACTCACTGTGCTCCATGCATGCC
TCCGACCTCTTGTCGCCCAAAAAGCAGAGTAGAAAACTGAGTAGCAGACTAGCAGTAGAT
CATAGACATACACTACATAATGCTAAGGAAATCCCGGACACACCACGCATAAGCACAATT
TCGGCATGCGTCAGCTCATATATACACGCTCTTTGTCATGCATGCATGCATGCATGCCCA
AGAGCTAACGCACACTCGGCCTTGCGTGGTTTTGCATCACAAAATGGGCACGTCAGGCTG
TCAGGGCGATTGTATATGTAACGTACGTACCCATCAATTTGGTGTACGCGCGGCATGCCA
CGACGCACGCCATATACCCGATGTTTTGGGCCGTGCGCACGCAAGACGCAATGACACAAC
AAACGTATCAATCGCCGCGTGCACTAGACTAGAGGGTTAGATTAGATCGATGCATGGTGC
AGGCAGGCAGGCAGCACGCAAGCTAGCAAGATGATGTTGGTGTGAGAAGCCATTACCCAT
GTGAGGTGGGGAGGGATGATGAATGAGAGAGACCGATGAGTAGAGGGCTCCCCTCTCGTG
CGTACGCACAGCGACGTACGGTACCCACCTACCTACCTACCAAGGGCGCGTGATCCAAAT
GCACATGGCGCTGCGTGGTCGCATCTCGTGTGGAGTGGCGGTCCCTCTCCCGCTCCAATT
ACACGGCCAGTGAGTGGTACGGCACATGCAGACGCGGCCGCCTCCCGGCCCCACCTAGTA
GTGACTGGTGACACATCTGTTTATTATTGTCTTAAGCAATGATGTGAGCCTCAGTGCACT
GCTACTAGCATTTAACAACCGTACCGTGGCCACTTGCATGCGGCGCACGTCAAAGGGCAT
ATGCTGCTTGTGTCTTGTGCGTGTATGTGTGTATTCTGTCACAAGCTGAGTGCACATGGA
GACGTCACAGAATTAAAGGGAAAAGGAGGATGTTTCGGGGGCAAACCCAGGAGTTAACCT
TACAAGTCATCAGTCAAAATTTATACTCCCTCCGTTCTTAAATATAAGACCTTTTAGATA
TTGCATTATGAACTACATACAGATGTACGTAGACATATTTTATAATGTAGATTCATTTAT
TTTGCTTCATATGTAGTCTGCTAGTGTAATTTTCTAAAAGGTCTTATATTTTAGAACGGA
GGGAGTAGCAATTGACTAGCGGCATGTGAATTAACCTGACTTGATGGTGTGGTTTGGTCC
GCAGAACGAGGTGTCCGTGCTGTCTCCTCGGGTGGCCTTCCTGGATCAGCAGCGGACGAT
CCTCACCGTCGGCAACAGCCACCTCAAGCAGCGGATCGCGGCTCTGGCGCAGGACAAGCT
TTTCAAGGACGGTGAGTGCTCCTACCTCCTGCTCCGTCAGAAAATTCACCAAAGTCATGA
CTCGTGACTGAGGAATTAACCAAAGTCGTCTTGACCTGCAGCTCATCAGGAGGCGCTCAA
GGAGGAGATCGAGAGGCTGCGGCAGGTGTACCAGCAGCAGAACCTCAGGATGTCGTCCGG
CGCGGGCGCGGCCTCCGACCACGGCGGGCCGCCACCTGTGCGCGCGGAGAAGGAGCTCAT
GAGCTAGCCGAGCGATCATGGCATGCCCCTTCCGCCACGCCGCCGCAGCATCATTGACCT
GTGAGCGGGAGGGAAACATGGCATCAATGCATGAATGAAACCGTCCATGCCTTTTTTCTT
GTTCTTGTTCTTGTTTTTTTTTTTTTTTACCCATTGACCTGTATCATTTTTTGCATACCG
ATTTCGTTTTTTTTTACTGTGAAGGAAAAAAAAAACAAAGTGTAGCTTCGTTGTAAATTT
TGTGTGTAGCATTGCATCCTGTGTACGTAGACTGTTTTCGGTTTAGTTTTGGAGCCGTCG
TTTTTTAGGAAAGTTTTTCTTTTTTTGGAAACCACATAAGCACAACTCTTGCTTTGTATC
CTCGTACTGATTTTAGCGGAATTGCTCTATGTATTGTTCTGAATCGTTTGTTTCCCGGTA
AATGTATGTGTGTCCATAGGGCTTATGCTTCTTTTTGTAGCTTTATCTTGTTGTTATGAT
GCTTCACTTAACTTTGTACTTCCTTCGTTGCAGAACATAAGATGCATCAGTTTTTGTGAA
AGTCGCACGTTTATATGTTTGATCAAGATTATAAAGTTAAATAAAATAGCAATATAGGCA
ATACTTAATAGATAAAGTATGAAAATAATCAAATAATATGGATTTCCTATTGTAGTTGTT
GATATATGTTTTTCTATAAACTTGGTCAAAATGCACAAGTTTGAATTCGGGAAAAACTAA
TACTTGTTATATTTTAGAATAGATGGAATACTCTATTTTTAACCTCTTCCATGTGGTTGG
AGGTGCAATAAATCAGATTCTGCATTTCTGCTGCACCACTTCATCTGCAAGATCGATGCG
TCGTTTGTTCCATGTTTCTTAAGTTTTGAACATGGCCCACTTCTAGTGTAAAAACGGGTT
ACACCCTATTTTAGGGCAGCAGCTGGAGATGAATGTTTTTAATGCTTTAAAAACAATTTT
TGTTGTTTTAATTTTTGCTCCAAATAGTTTTTGGTGCCCTATTATAGGGCAGCTATTCGA
GATGCTCTAAAGGAACATCATAGATTCATGGTCAAGAGATCGAGAGTAGAAAACACGCGT
GCATGCGGGGGTGGGGGGGGGTACTTTGTTTGTGTTTCTCTTGCGAAAGGTAGGGCGAGA
CCTTGGCGCTGCCGTCGGTTGCAGGGATCTCCCTTCCTCCTCCACTGGTGGGTTGTGGTG
TGGGCATCATGCTCTGACGTGGGCTAAAGGGGACACCTTGCTCGGTCTAAAGGTGGATCC
AACTTAACTGTGGCCCTTCACATGTGGTGATGGTGATTGACTTCGTGTCTGGAAGGATGA
AAGCGGATGATGCTGCTACTGATGAGATTTCCCGACAGCTGGAGTAGCCGGCTCGCATGG
ACGCCCCCGTCTACATCAGGAGAGGCCCGATCTTATGGGGGCGATGTCCCCCCCCCCTTG
GTGGTGGTGTCCGACAGGTGGCTCGTGTCGTGGACTAGTCATCGGTGTAGGGTTGTGCCC
CTTCCTGAGGCGGGCCTTCATGCGTGGAGCTTGGTGTTGGTCACAAGGGAGCCAAGACCG
CCCATTTCCCAACTGTGTCCTATCTACTCAAGGTGGAGATTTTAAGGATAGGGGAGAAAC
ATACTTCTGCTCCGGCGGGCGGTGCCCAGGCGTTATGATATTAGTGAGAGTTTTGGCTTA
AGAATGTCGGGGTGGTTCTGACGAGTCTTTTAGCAACGCTGGCGGTAATGTCCCTTGGTT
GTGTGGGCAATGAGGGGGTGGTGACGGATGTTCCTTGTGGCCGACTATGGTGGCATCCAG
ATATGGTTGTGGAGACTTTGACATGCTCGCGGTGGTATGAGCGTCTCATCATGGTACGAG
AGAGTTGCCGAGCAAAAAAATCAACGCTTTGGCGCCGAAGGCGGCGATGCCTGCGGGCAC
CTCTTTTCTCTTGAGCGTGTCATTGTGGTTCTCCTTCTCGTGCTAGGGCTTAGAGCGAAA
ACTAGCGTACATCCCTTTGGACTCGCGACGACGACACTTTGCGGCGTTAGCCTCCTCGAA
GCGTCATCGTAGAGCTTAGGTGTGTCTAGTCATGGTGTGTCGTCGTCTGTAGCTTCACTA
ATGCTCATGCTCGACTTCGTAGTCGTGTCATTTTTATTGTTCCTTTAAGTTGTTTTTGCG
GTGCGATTTATGTTGGTTGGTTGTCTATTTGATCTGCATGTATGAGGGATTCCTCATTAC
AATGTATGACTTGATCATTGTGCTTTATTATAACGTGAGAAGAAAGACTGCTTTGAGGAG
GAGAGATCCAGAGTCAATGTTACATTTTGGTTTTGGTTTGTGCATACATGTTCCTTCTCA
AATAGAACAATTTGTCATGTTTATATTTCTTGTGTCGGTACTAGTGTTCATAGTATTCTT
GTCAGAAACTCCGGAAAGAAAAATCAAATCCACTTACTCCCTCCCTCTCCCAAGTGTTCA
TATTTCCATTCGATGATTTGGCAAGAGTCCTTAGATTTTAAGTACCGGTCATATGCCCCT
CCAAGAACTGAAATGCACAAATCTTTTTATGCGGTTCGGATGTGGTTTTCTATTCAATGC
GGTCATGCATCTGTCTGCAGGATGTTTTTCGGACACAATTTCCCCCGCAAAACAAAAACG
AACGTGGGAGGCTTTATGGGTGTGGAGATAGCAGCCACACTCTCTTATGTCCACCCTGGC
CCATCCAACCCTTGTCTGCGTGTGTTCCTCCCTAGTGCCAACTGCTTGCGTTCATGCCAT
TGTAGAGTGGCGGCTCCTCATGGAAGCCTGTCCAGAGAGAATGCGACCTCTCACTCGCGT
CGGAAGTGCTGCGTAGGCCGGGAGAGCGCCGCCCGCTGCACACCCAACTGAATACGCCTC
CTCGCCGCATTTAAACATGTGTGTGTGCCGAGAAACTTACTTCGGACACACATCCGTTTG
CGAGCCGACCGACATTAAATACAACGTCGGGCAGGCTTCTTGTGCCTGCATGTTATTTGA
AAGAGGCCAGACGCAGGAAAAGAATCGCACCACTCCTCCATTCCTCATTTCCTTCCACCA
TTCTCTCCCCCCCCCTTTGCATGGCATCCGGCGAGCAGGAGGAACAATTGTCCGGTATAA
AAGTCGGCTGAGCTAGGCAACATGCGGCCCCACCTTCCTCTTCGAACCCGACAGAGCAAG
TGGCCGCTTCAAGCTGGCGCCTGGTGAGTTGCTCTAGGCCAGCACGGTGGAATGAGCATC
GTGGCTGCCGTGGAAAAGGCCAGATGTAGAGCCATCTGACGTCAACGTTCGTAGAACAGA
GCCCTACCGTCGGAGAAACAAGTCGGTTTGGAGATCGACGAGGTGACGGCATCCGCGACC
GTTGTTCTACCTTTCTAGGCGGCGGCATCTACATCTGCACCCGCGATCAATAGTCCGAGG
CTACCGGCAGTCCGATAAGAGATCGGCCATATACTAGTGTAGTGTATCGGTGTCGTGGGA
ATGGAGCTGTATGGGCCGGAGGCCCACATAGTTTTACCTATTTTAGTTAAAAATACATTT
AAAATCTAAATGTTTTCAGTTTGTTTGTATGTAATTCATTATGTTTGCATGAATTTCATC
CAGTTTGTTGAAAAGTGTTTGAAATGTATGTACGCGGTGTTGGATGGCCGGCGCCGACAT
CCATGCCCGCGAACGGATGCCGGAGCAAATTTGGAAGTCAAGATTGAAGATGTCCTTAAT
ATTTGAAGTTACAAATTTGCGAGTCTTCATATTTTCCATTTGATGATTTAATGCCCAGAT
CCCCATATCTGTTAAATGTTCTCCTACCGATTAGTATAATGCACCATAAGAGTCCTTAGA
TTTTCGGTATTGGTCATATCTCCTCCAAGAATGGAACCGTGCAAGTCTTTTAGTATTGTT
TTTTCAATAAAAAAATATTTTATTGAAGTCACATCATTACATCAAGATGATACAATTACG
GTGAGATCACTTTCAAACTCTGCATAACTAGGATGCACATACAAGTTTTATAACAAGTGA
AATAACAGAAAAATGCTATGGACTGTCAATCCATAGACTAGACCTCCAACCATGCTCCTG
GGTAAAACACTCCTTGATCACGCGTTTCAAATGCTCACACGCTGCTGCACCAATTCCCGA
GAACCTGACTTCTGAAGAGTAGTTCGGCTACGGAGCCAATGAATAACTAAATAAATAACC
TGTAAAGGAGATGGAATTTTTCTCTCTTGTCAAAAACACATCATTTCTACATATCCAATG
CGAGCAACAAGTAGCGGCCGCCCCTAACGGGACTTGTCATTTTAGATCCTTCCTTATGCT
CCATAGCCAACCACTGAACAAATGTGACATACTTTCAGGTGGGAACAACCCTGAAGCCAC
TTGTATACTAGACCAGATGGCACAGGCAAAGTGACATTAAAAAAAAGTGTCGGATAGTCT
CGTCTTTGTGAAAAAAGCAACAATTTTTACTACCTTGCCTGTTACATTTAGCCAAGTTAT
CCCTTGTTAGAACTACTCGTCGTAAGTATCAAAGAAATATCTTAACTTTGAGCGGCGCCC
TAATTTTCCACATGCCTTTGTTGATATTCGGAACATCACAATGCACAAGAGCAGGATAAT
GAGACTTCAGCGAGAACACCCCATCATGGGTTAAGTTCGAGCGAAAAATGTCTTGCTCAT
GTGTGAGAACAATATTAGCAAATCATGGAAGTTAATTATGTTGTAAATATGCCCTAGAGA
CAANAATAAATTGGTTATTATTATATTCCTCTGTTCATAATAATCCTTTATTATCCATGC
TAGAATTTTATTGATTGGAAACTGAAATACATGTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGTGAGCCTCTAGTTGAATAGCTCGTTCATCAAAGATGGTCAAG