morexGenes - Barley RNA-seq Database

Contig contig_51290
Source Contig contig_51290
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_51290 (6183 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_51290

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_66250	2	1625 bp	AK366393	Available	Available	None
MLOC_66249	1	197 bp	MLOC_66249.1	Available	Available	None
MLOC_66251	1	1658 bp	None	Available	Available	None
CDS Structure of MLOC_66250

CDS Structure of MLOC_66249

CDS Structure of MLOC_66251

Contig Sequence (6183 bp)

>contig_51290 6183 assembly3_WGSMorex_rbca.fasta
TGCCGCAAAAAAACAAGTGGGGGCATCTGCCCCCAGAACTCTTAACCTAGGTCTGCCACT
ACGTAGTAGACATTATGGACCGCCGGCCAGTGAAGGAGCGCCATTTACCTGCTCATCGGT
GCCGACGCATATCGGCGGGAAAGCTCGAAAGAAGGGAGCAGGGTGATGTGAGTTTGGACG
GTGAGGAGAAGAGGGTTAAATAGGGGCCGAATCGGTGGGAGGTGAGACAAAATCCTGCTG
CCAATTTTCGGAGACACCCACGAGCTTGCGCCGTCTTTGTAGTCGCAAGAGTTCACCGCC
CCATCCCCTCCCCTGCTTCAGCCGAGTCTGGCTCTCGAGAAACTATCGATTCACACGTAG
CTTTTGGGTCTGGCTCCGATGTACTTTAAACTTCGTGCCATGCACGCCAAACACTCTATG
GGGGCAATTACACAGCTTGTTTCCTTTCCGCGTAGGCCTGATTGAAATTTATGCAGGCAA
CCAAACGTGTCCTTAATTTTATGGAAACTAGATGTACTTCTTTTGTAAACTAATACTCCC
TCCGTCCGAAAATACTTGTTCTAAAGATGAATGTATCTAGACTTANNNNAGTTATAGATA
CATCCATTATATTCATTTCTAGAACAAGCATTTCCGGACGGAGGGAGTATAAGTTTACAA
AGTGAGTACATGGTTTTCTTTTTGTACAATACAGACCACAATAGACTAGGGTTTTCCTTG
TGTACAATACAGACCACAATAGACTAGAGTGGTTGATTCACTATCCAACGACTGAACATG
GCGAAGCACCTCTCAGGCTCGTACTCAGGCGCCGTGTGACCACCACCCTGAAAACCAAAT
CCGAATGAGAACCGGTAATCCATCAATAACCACGCGCACCAAAAACTCACACAGAAAATG
TTACCTTCACGGTCGCGAATGTCATGTTGTTGGAGTAAGCTACAGTGAATCTGCAAACCC
AGGGAAGAGGAGGCAGAGCGATCATTGTGAGTGAGTGAAATAAACAGAGCATGCAACGAG
AAGGGGACGACGACGAACCCGGCAGACTGGCCATGGAGATGCCATGCCCTCCAGTCGCGA
GCGACGGGGAAGCCGAGCGATCTCACCCACGCCTGCGTGCCCAGGTGCGGCACCACCGAA
TCGTGGTCGCCGCTGCCATGGATACCAAGGAAAACCCCATCAGAATAACACTCAGATCTT
TCAACCGATCCTGGTTTTCATGCACTAGTAACAGGCCAAAATATGAGGACCTGTATACAA
GCGCGCGGTAGCCGTTGGCCGTAACGTTGCGGTGATACTTGATGCTGCTCGCGATGTCCC
TGGTGTACGGGACGCCGCCATCTTGGCACCTCACCCACTCGTCCACGGTGCCGTCCCTGA
CGCCGAGGGCGTCCCGGGTGCGCTCGTCGTTGGCCCAGAAATACGACAGGTAGTGGGCGT
AGTTCTGATCCATCGGGCATGCATGATCGGGTCAGTCCAATGAACGGGGGAACACATACA
GGCATGATGCTGACTTACAATACAGTCAAGTGGAGGACGAACTGGCGGATGTTTCAGCCG
GCTCCCCATTTTGATTGCAGCTGCTTCCTCGCTTAAGATCTTCCTGCCAGCACCAGCCGA
ATCGCCCGTCTCCGCATGCGGTCCAGCAGATGAAAAAACGCATTTCTCCCGCAAAATATG
GGCCAACATAACTTCGGAGAGGAGCTGTACGTAATTGGATCATTTGGAACGAGTGTAACT
TTGAGTGCTTGATCATATATTTACTTCATGTTTATGGACGAAATAAACGTTTTCCTGGCT
GGCGTGTTCTTACACTATGGAAAGTACCCAGAGCTTTGGCACACAGCACGCTTGTAGGAT
TCTTGTAGTCTTGTCCTTGACAATGACCCAATATTGTCTGTATGAAAGAAATTTATACTA
TGATGAGTACTATTTGTCCCACAACAGTTTTGACGGGAATATAGTCGATACAGGTGAGGT
TAATTACCTCATATAATTGATCTGATATTATACCAAATCCGTGAGCAAAAGGCACTTTGG
AGCTTTCGTCGATCCTTTCACCTGTTGCCGGGTTACCTACTAGATAGCCCTGTTGACGAC
GAAATGAACATAAATATGGTGTCAGATATATTAACACCATCACGCTACGAAAGGCAGGCA
TTTTTATTTTGTTGACAAAGACAATATATTAATATGGTGGAGGTACCACTTACATTCGGC
CTCTCCAACAGTATAATATTCTAAAAACATTACGGATGCATGCAACCCAAAAACAAAAAT
AAAAGAAGAAAAAACAAAAGATCCTGCTACAATGATCAATTCCTTATAACAGCAGCAGGA
GCCACCATTAAGACAACACCCGAAGTTAAAATTCTTCACAAGGGATGCCTTCAAAAAGAA
AATAATGCACAAGCGCCGTCGGCCCCCGATCATACATCTTAGGTTTTTACTCTAAAAAAA
ATCCACGCTCTCAAAAACAATGCCTTCAACAATGTCACTATCAGGCACAACCAATTAAGA
TCAGACCTTGGATTTTTAACTTGAAAGCTAAGACTTTGTACTCCTCCTGTACTGCCACAC
CCACTTACCGATGCTGCTACTACAAGTCACGAAACACCAAACAAAGTCCTCATCGCCTAG
AAGATTTGATCCGTCATTACTAGGTCTCACACCATAGCCACCATGACCTTCTACGCTACT
GTCTTCAGCATGGAAATTAAAATACCTACATGTCCATATTGTCAACACAAAATGAAGCTT
CACGTCAAGACCTCCTAAAACCACACATGCTGAAATAGGGGTGCACATGATCAATTCCCA
TCCGATCCAGCAATCTACATGCGTCAAGCACCTAAAAGAGATGTTCGGCGAAAGGCATCC
AGCAATCTACATGCGTCAAGCACCTAAAGGAGATGTCCGGCGGAGCCTTCCGGAATTCAT
CAAAACCCAAATCAAAGAGGGCCGACATCAAGCAACACACCGTCTTGGCCTTGGAAGAAC
CATAGGACGGCCTCCATTATTGAAGCACAACCAACACGTCCCTACACTGCCGGTCTGAAT
AGCGGAGGAGAACGCATCTGCGACGGCGCCTGCATGGACGCGCCACTCGACCCTGCCTTG
CCGCTCCGACTCGTGACATGACATGATCCAAAGCACCACGACAACCAGAGGATGGAGGTG
ATGGTGGCGTGTGGTGGCTAGGGTATCTTCCTAGGTCGCCCTAGGGAGGCGGCTCAAGGA
AAAGGCCTCAATGACGTGACCCCTTTGCTTAAAAATTAAGGGAGAGTGTCACTTCCCTGA
CCTCTGCACCAACTAAGCATGAAAACAACATTTGAAGCACGAGTACCAGGATTTTAATCT
TAATTACGCATCAAGCCTAGTTTTCAAGGATAAATGTGTGAGTATCAGGAAAGTCTGTTC
AAATCTAAATTCGCCTCCGTGAGAATTTGAGTTTAGGTGTTGGGTTGTACATACATTCCC
CCAACTAGTTGAGTTAGGCTCACGTCCCAAAGACAGTCTTATACTGTTAAGAAAATATAT
AATTGTGTCCTCTACAAGCTATGAAAATATTGGAGGCACGGGTTGCTAAGAAGAGATTTT
TTTTACAGACCTAACTATAGTTGATTAACAAAGTGTGCTTATTTAAACTGCAAAATGATA
GATATGTTTATGTTAGCCATAATTTAAAATCCTATAGCGACTAAAATAGTAATATAAGCC
GTTGACCGTGATCCACTTAGCCATAGTTATGAAGATCCGTCGTCTCACTAGTAGAAAAAA
GGGCTTTGGTCCAGGGCCTGCAATCCCATTAGTCCCGGTTCACACATGAACCGAGACCTA
TGGTGTCACTGGTCCCGTTTCGTGAGGCTAGGGCGCCGGCCGGGCATCATGGGCCATTGG
TCCAGGTTCGTGTCACCCCTTTGGTCCCGGTTTCATACATGAAATGGAACCAATAGGCCG
GTTCCATACACGAACCGTTCGTATCCCCCTTTAGTTCATATCCCCCAGCTTCGGCCAGAT
GCTGACGCGTGGATGTCATTTGGTCCCGGTTGGTGTGACCAACCGGGACTAGAGTTCCTC
CTGCCTGGACTTCCCGCAGCGGTCACGTGGAGCTTCTTTGAACCGGTTCATAAGCCAAGC
AGGACTAAAGGAATCTTTAGTCCCGACCCTTTAATCCTGGTTTCAGAACCGGGGCTAATG
GGTCTATGGAACCGGGACAAATGAGCCTTTTTTACTAGTGTCTATGTTTTGATAACTAAA
AGATGGCATATCAAATTAAAGGATGGATACTTTTTGTTGAGTTTTCTAACATAATTTACC
TTTACCAGTCAAAACCTCATGTACGGTAATCTGATATATTGATATATACATATACGTAGA
TAGCAATGCAATGCTTACAATATTTATAATATGGATTTTGTATTGTCTACGTTTCATGAA
CAGACATAATATGTGGGTTTTCATGCTTCTTTTTAGGGATGAAAACTAGGCAGAAAGATT
TCGTCCATTCAGTTTTCTTTTAAAACAGAGCGTAAATACGCAATCGGAAGTGGAATTTAA
ATAACAGAACCAGACTGGATATTTTACAATAGAATGGAGATAGAATGTCGCTTTCTGGTG
AAACTTCAACATGAAAAGAAATTTTAGCAAATGTACATGGAGAATATTATTTTTTTGAAA
AACCGGCAGAATGTCTGCTTTTGCATTAAGAAGAAGAGAGTTGACTAGTTTATAAGAAAA
ACTAACCAAAAACCGATACATCGAAACACACGAGCCAACGACCCTCCCGCCCACGTGATC
AGATTTGACACTCCACAAAATAAAGGTGCTCTCTGGAGCTGCCGCTCCTACTTGCCCGCT
GACCCCGAGGCCGCGCTCCACCTGAGCTAAGGACGCCACCGTCCACACGGCCAGAATCGA
CACTCCACATCACTGTTCTCCGGAGCCACCGCTCCGACTTGCCCGCCGACCCCGAGGCCG
CGCTCCACCTGAGTTGACGCCGCTGCCACCCACACGACCAGAATCAACACTCCACATCAT
TGTTCTCCGGAGCCGCCGCTCCGACTTGCCCGCCGACCCCGAGGCCGCCCTCCACCTGAG
CTGACGACGCTGTCGCCCACACGACCAGAATCAACACTCCACATCACTGTTCTTCGGAGC
AGCCGCTCCGACTTCCTCACTGGCCCCGAGGCCACGCATACTCTTGGCGGACGATGAATC
CGCAAAGTCACCCGAGCCACCACGAAATGACGAAGGACCTGACCTCCAAGACGTCGTCCC
CAAGAGGAAAGCGATGATATCGCCGGTGACGCCCGCTCCGACCAAGGTCGAAACTAGGGG
TTTCACCCGGAGAGCGTGAGACCGAGGTGACAAAGGTGGTGAAGGGGCTCCCACGACGCG
CCTCCAAGGAGGGAACGACGTCCTAGTACGCCGTCGACGCCGGCAACGACCGAGGTCTTG
CAAGGCCTTCGTCTGGAGCTCACCGAATCCATCGTCACACCAGCCTGCCCAGCAAACCGT
CTCCGGGCACATGCCGACCGTCCTCGCCCAAGCCGCCAGCTCAAACATCCAAGGCAGCTC
ACCGCCGGCAAAACCTACCTGCTGCACCCACCACCATAGCCCACCTCGCAGCACAATGGC
GTCGCCGGACTGCCAGAGCCACGCCCCCAGACCAGCCTCCACATGCCACCACCCCAACTC
TTGCGAGGCCTAGGACAGCAACGCTCCTCGCGGCCGTACGCCAAGCCCACCAGTGCGCCG
CCACCGCGTAGCCGTCCACGAACCGCGACACACCTCCTCTGTCGCGGAACTGTAGGAGCT
AGCCGGAGCCGCTACAACCGGGCCAGCCACCACCACAGTCACGGCGCCGCCGCGCCGTCA
TCCAAAGTTGTACCTCGCCGCCACCACCATAGCTTCCCCCGCCGAGGGAGGGGACCCCGG
CACCCCGCACGCCCCACAGGCGCAGCCCGCCGGAGCGGCACGTCGGAGTGCCTCAACAGC
CAGATCTGGGCGTCGGGCGCCAGATCGATGGTCGCCGACCTTTGCCACGCTCCGCTCGCC
AGCCAGCTGAGGGAGGGGGTGAGCAATCACGCCACCATGCCCGGGGCCGCCGCCACGGCT
TGCTCGCGCCAATGAGGCGCCCGCCCCCGGCGGCCGCGCGGCCGTCGGCACGGGCCGGGC
CGC