morexGenes - Barley RNA-seq Database

Contig contig_51288
Source Contig contig_51288
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_51288 (5737 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_51288

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_66248	3	1442 bp	None	Available	Available	None
MLOC_66247	4	1459 bp	None	Available	Available	None
CDS Structure of MLOC_66248

CDS Structure of MLOC_66247

Contig Sequence (5737 bp)

>contig_51288 5737 assembly3_WGSMorex_rbca.fasta
GGGGTCAGCTTGCTTGCTGCTCGCCCAAGGTAAACAAACCATAGCGCTACCCGCCACGTC
ACGGCCTACACGGCGATAAGACGGGTACACGAGCCGGGCCTAACGGGTAACGGAATGGAG
ATCCTTTTCTTCACCTTGCTTCCAGGCCTCCCGCGTAGTCATGCGGGCCCCACTCCCCAT
GCGCTTTTCTACTACAGCCGCAAGTTCAAAAGCATCCCTCTCAGCCACCAATGCATCTCG
TTCCCGTACGGCTCGGAGCCACCCACCCCAGCATAGCCGCATGAAGGGAGGCTTGGACAA
TCTGGGTCGTCCGTTGTGTCCGGCCTTCGTCAGCCACGAGTTGCCCTGCCAACATCGGAC
GGTTGTGACAGGGGGGATGCACAGCACCGACGGCTCGGATGGTGGGTGAGCATGGGTCGA
GCGCGCGAGACCACACGTTTGGGGTGCCCCTGGAAAAAGCGTGGGGGGTGGCGAATAGTA
GGTTTTAGCCAGGTGGCCCTTAGTGTGGGCCCGTGAAGGGAGGCCCCTTTGGGTCATTTT
GGACCGCAAATATTCAGCTATTGGGTATTGATTGGACCTTTTCTGTTTTGTCTCTGGGCC
CTTGGGAAGAGCGTGTTTTGCGTCCTCACCCCAAGTTACTTTTGCAACCCATGGTAGTAG
CACAAATAATTTAGAACTACTCGATTTTCATGAAATGTTGTTCACATTATCTTCTCGACG
TTAATGCATTTCTAGAGACCATCGAATTACACCTATGGCATGTACATATTGAAACACTAG
GAAACCACCATCACACGAGAAGTTCTTTTCTAAAAATTACGGCTATGATGCATAACTAAC
TAAATGCACCTATTACATTCATGGCAAAGTAAATTTAAATACAATAAAGAAATCAACAAA
TAGCTGAATGGTTAGCAGGATGGTGGTGCCCGTAGTAGTCTGTTAATAAGGATGAAAATT
GGGTTTGAAAGTCACATCAATGCGGTTTATCTTTTTGTAAGGGACCATGTTCCCGTCAAT
AGCAAGATGTAAAACAAAATTCAAATGCAATAGAGCATTGGATCTATTACAACATCTACA
CACGGACCCTTCAAACACTCCTTACATGTCTCGACAAAAGGCTCGGTCATGAAATTGCCA
TCTCAACTAGACGCCTCAAACCGACCATATACATTTGGGTTGTCTCACACCCCATACACA
ACCCATATATGGGGCGGATATGGGATGCCTGAACATGTGCGCTACGTCAGATCTGGCTCA
TGTCGGTTCATCCTGGCCCCACAAATATGCATCCCTATCGGCATCCTTGACCCAATAGTG
GAGCTAGGTTTAGCCTACGTCCCATGCAAGCAGTGCAATTACGGTAAACTACTGTGCCAT
TTTTGCTATAATATGCTACAATTAACAATGAACAAATCCACCATGCCACAGGCCAAGGCC
ATGGTTGTTTGGGACATAGAATCGTCTCTGCCTGGACCAATAGCCACTCCACTTGCAGTT
CCCGCCGATCAGCCCCAAGCCCCTCTCCGACGATCTACGATAAGGTGGGCAACAAATTTG
AGTCGACAATTCTATGTATGTCGAGTGTGACCTCGCCCATGCAGGGTCGAGGAGTTAGTC
GTACGGATGAGGAAACTCGAGCTTCGCAGTTGGAGTCGCTCCGGGAGGCGAGGGCGAACG
CAAGATCAATTTTTAGAGGGGGCAAATATGTGTCAAAATATAATTTTTTCTTTGCTTAGT
GAGGGCAAATCACTATTTAGCTTATAACATATAACGAAGACACTAAAAATTGAGTGGGGG
CAACATCCCCCATTTGTTAGTACACTGGATCTACCCATGCCGGGGGTAATCCATTTGCGT
CTGTGCAAGTGGAAAATTTGACAATGCGAGCGACTCGAGTCACATAACCGCGACGGAACC
AGAGACGATGAGCATCACGTGGACATACCACCACACCCAATCGGATGACTCCGGTCTGAC
GGCACAACCCTTACCATAAGCCTCGTCCTCACAACGTCGGGCTTTGAGTTCAAGGCCAAC
CTTATGACCACAACCACAGATTATAGATGCCATTCAAACAACTAGGTTCAAGCCACTAGT
ACTCCAATATATACCTGACCATTCGTCTGGCCGGGCCAAACCAAGCCCGAGGTAGAAAAC
CTAGGCCTGAACCCTGGCCTGTCCGACCGTCGGGCCTAGATTTCAGGCCCAAACCCATCC
CATCACTGATAAAGCCCGTCGGCTTTGGGCCTCGGGGCGGGCCCCTTCCTTAAAACATGA
AACCACCAAGCCCAGACCTGGCCCGGTCCGACATGTTCTTCAGGCCCAAGCCCGACCCGC
GAGCAAGACCGGGCCGGGTATCTCATGGCCAGGTACTCTAGTGGTACTGGGGCAACACAG
TGACACCAGGCAACATAAAAATGCGGTGGCTTGCAATTCCAGGGATTTTACGGGGGTGCC
CCAGGAAGTTAGCCTCGGAGGAGGCCGAGAAATCCACAAGTAAAGATAGTGGCTGAGATT
TCTCGCGGCGGCGAGAGCGACCCCCACGAGCCCCCGGCCACAAACACACCTCCACCGTGT
AGTCTCCACGAGCCGCAGCATACAGGGCACCACCAGCAGCCAGCGAGCCCCGCACCCGAG
TATCCGACATCTCGACCCTTCCCTTCCTTCGTCACTCGCGCGCGCGCGCGCACGCACGCA
CGCACGCTTGTTCCTCCAGCTGCTGGCCTAGCTAGATCCCCAAAGCTGAGGAGGTGGCCG
GAAAGCTTCGTCCGGAAGCATCGGCCGGTGGCGGCAGAGAGAGGAGCTCCTGCGCCCGGC
GCGGCGGTCGCTTGAGGTTGGTGGCAGGGATCGGGCCTGGGATTCCGTTTTGCATGATGA
ACCGCTGGGCTGTTGATTTGATTTTATGCACGGGGTGGTGGCTTGGTGCAGGCCGCCGCG
CGGAGGGCGGGCTGGGCGGGCGACGTGGCCACCGGGGTCAGCTTGCTTGCTGCTCGCCCG
AGGTAACCTAGAACTAAGAACCATACAAGTTTCCAGAAATTCGTGCTTCCACTGGACGAC
GCGATTGATATATACGCTCCCCTCGCAAGTCCGTTCCTAGGTGTGCTAGTTTGTCGACTG
AAAACTGTGCAGCAAATGAGCCCACGCTTTTTTTTTTTCTGTGCCTGGTCGGTCTCTGTG
GTTGCAGTGTTTGATTCCCGTTGCTCTGCTCCAATGATCATGGTGCACAAGCTCAGAATT
CTGAGCGCTTCAACTGCATCCTTTTTCTTGCTCTAGTTAGTCCTGTCCATTTTACTGTGG
CTAGGAATAAAATTAATAGTGATTCTATGGTCCAACTTCTTAGAAAACTGTATGGTCGAC
TAGTAAACTTAGGTACGTGTTTTTTTATCTTGCTTTTTTAGCTTTCACGGGTTTGAGGTG
TGCTTTTATCAGATCTCTGATCTAGTATGGTGTTGTTTGTGCTCTGAAGTTGTTTAAAAA
GAACGTGTGTAAGTTAGGCTTCTGAGTTTGCTATGCAGGGAGAGAACAGCTTATTTTTTT
TATAAGCAGGTGAGTTAAGTTAATTTTGGATTTGCTATGCTGAAAAGAGAGCAGCTTGAT
CTAGTTTAACTAAGCAGGTGAAGTAATTTGACTAAAATAGATGCTATAGTGAATCGTGCT
AAGAAGAAAATATATTTTTTATCTGCTATCAAACATTCATGTTTTTTTTTGGTTGTTGTT
ATGTCAATATATTTGCTATGATAAAATATCGGGCTGGCTTAAATTCTACTGTTTGTTTCG
GAAAGTTCAGCAATCCTAAAGCAACATATGCATATTCAGGTATGTTGCCAAAAAAATATA
TGTTTCTATTAGTATTAGTTACTCGTTTTGCTTCCTAGTAAGCTCATAGATATGTTTGCA
GGCATACTATGTTGTCCTTAAATAACGTGGTTCAGGTTGTGGGAGATAAACTCATGGATG
CTCCTTCAAAGGTATACTGTTAGTGGAGGTAAAGGAGGCCAATCATCGATTCTTTTTTCG
AGAAAACGCAATGCGTTTCATTTCATTGAAAAGATAGGGAAGTACAATCCTCCTAGGAGG
CTGAGTTTGCATGAGTCATGAGCCCGATCAGTGGACGTCCCAGGATGTGGTAGGACTGCC
CTGAGCCCCAATGCTCCTGCTTGTGCCCAACATTTGGCCTCATCCCGAATCCTATCCACT
AAAATATCGATTGAGGGTCTCGTGTTGTCGAAGACACATTCGTTCCTGTGCTTCCAGATC
ATCCATGGGACAAGCATGGCGATGGATTGCAGGCCCTTGCACAGCGCCTGGGGAGTCTGC
CGCTTCACCTTCTGCCACCAGTCCGTCAGTGTGGGTTCATTGGCCGGAGGCTGGACAGGT
ATGCGTGTCCAGGCTAAAATGTCATGCCAAGTCTGCTGGGCGAACGGGCAGGCCAGTAGC
AGGTGCTGGATGGTCTCTGGGGCCTGATCGCATAGCAGGCATCTGGGGTGGTGTTGCAGG
CCGCGGCGTGCTAGCCTCGCCGCCGTCTAGCATCGGTCCTGGTTGGCTAACCAGTGAAAG
AATCTGATGCGGGGCGGCGCCCAGCTCTTCCAGGTCAGCTTCCACGAGGGACAATGTGTG
GATCCATGGAATGTCGCGGCGTAGCAGGATTGAGCCGAGTATGCACCATTGGTCGTCCAG
TTCCAGAGCATTTGATCAAGCTCATCTGTAAGGGCGATCTGCTGCGCGGCCTGCCAAAGC
ATCAAGTATTGCCCAATCTCATGGATCCCGAGGACCTTGGATGTCACGGGCCCATGAGTT
GCCCGCCAGCCCCTCCGCCATTGTTCTTGTTTTGCGTCGTCTCTTGGGGATGCACTGATA
GAGTGCCGGTGCAAATCCACGTACCGACCTCCCGTGCAGCCAGCGGTCCTCCCAGAATAG
AGCAGTCCGTACGTTCCCGATGGCCATGGTCGTGGAGGCAAAGAATAGCGCTCTCTCCTC
CCGTGAGAATTGCAGATCAAGTCCTTGCCATGCGCGGTCTTCGTTGGTGCGGCATACCAC
AGCCACCACAGCCTTAGTGCTAGTCCGGCGCGCTCCAGGTCGCATATTCCCAATCCACCA
TACTCCAACGGGCGGCACACGTGGCGCGAGTTGACGTGGCAGTGCCCACCATTGGCGACG
GCGCGCCCAGCCCAAAGGAATCCCCTCTGGAGCTTCTCTAGTGGCTTGAGGGTCTTCTTT
GGTGGTGCAAATGCAAGCAGTTGGTGAACTGGAATAGCGCTCAATACCGATTTGACCAAT
GCAAGGTGTCCGGTCTTGTTCATTAGCCACGCCTTCCAGGTCGGGAGCCTAGCTGCCACA
GAATCGACGAGGGGCTGTAGTTGGGCAGCGATGGGGTCGCGCAGCGTGAGATGGATGCCA
AGGTAGGTGATCGGTAGCTCCACCACCGAGCATCCCATTTGGGTAGCCATCGCAGCAGTG
CTTGGGTCGCCGTGAAGGATGGTGGCCGAGCTTTTGGTGTAGTTAACCAGTAGGCCCCTA
GCATTGCCGAACAGGGTCAAGATACCCTTGACGGCTTCCACATCGTCTGGTGTAGCGTGG
CAGAAGATCATCACGTCGTCGGCATAGAGTGAGATAGCCGGGATGATTCGTCGTGGGTGT
AGCTGATGCAGGATGCCACAGTCGTGGGCACGGCGAATGAGGCGGCTGGTAGAGGCTAGG
GTTCTACCAGGTCTCGGACGTAGGTTGTAGGGGTGGA