morexGenes - Barley RNA-seq Database

Contig contig_51275
Source Contig contig_51275
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_51275 (6847 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_51275

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_66232	3	4081 bp	MLOC_66232.2	Available	Available	LOC_Os06g50340.1, FRAME:+1, EVALUE:0.0, 13106.m05408 protein receptor protein kinase CLAVATA1 precursor, putative, expressed
MLOC_66233	1	813 bp	None	Available	Available	None
CDS Structure of MLOC_66232

CDS Structure of MLOC_66233

Contig Sequence (6847 bp)

>contig_51275 6847 assembly3_WGSMorex_rbca.fasta
GGGGGGGGGTTCTTGTTTATTTATTGAAGTATTAATCAGGAATGGGTATCACTTTTACCA
CCCTCTCTCGTGCAATGACAAGTGAATAAACACTCCTCATGAGTTAAACACACTTAACAT
GGAAAATAGTGACCGCTTTGTCGCTCCATGAGCGGTACAAGCACACAAAACATATATTTA
TTTAAAAGTTTTAGAGAAGGCACATGAAAATTTAGTTGGGACGGTTGTGAAATACCATAT
ATATGTAGTCATTAAATCATAGTGTTTTTGTCTGATATCATTATCTTAATTATCGAGGCA
ACACTGCAAGATGGATAGGGCTTTTGGTAGGACAACTGATTCTTGATGCAGGAGTCGAGT
CGATCAAGATGTAATTTGGACACAACCCCGCTCCTATATGAAGGAAGCACGTCTTGATGG
ATGACTTCACGAGCACAAACTGATATTATTTCTGATCCCATCACCAATACATGGTAGTAA
GCATTAAGACCTCTTCCTCGTACCTTGTTTTTATTATAAGTGTTGAATCAAAATTTCTTG
TTGATTCGGTCAAAACCTAGATGGAGACTTTGCCGAAATGCTTGCTAGAGATCATTGCTT
TAAGGGAGTCTTCCTCTCGTGGGTTCGATACCCAGGGTCACATGTGGAAAAATAGGTGCG
GGGTACCCTTTCTTGTCCCAATACCGGAATTATAAAAAGGAGATGTTATGAATTTTGAAC
TCTCAGATTCCTTACGGTAGGAGGATCGCACTCACGAACGCCTAACTCTTTAGCCGGACC
AATTTTGTCAGCGACTAGAATAACTTCACCTTTGTCGTTGAAGAACTCGATTGTACTGTA
AGATATTTCCAAAGTCTTAACTTGAAGAAATATGTGTTGAGTTTGAGCATCACGTCAGTG
TTATCTGTTGACTCAAACAAGAAGAAAGAAACTATGAAACCAAAGTCTTCAAGCTTTTAA
TTCTTGACTTCACATTTTTCAAAGGGCGCATCAAATTCTTTAATGCACAAATAGGTTTTT
AAGGGTCGTCTTATTTGGTTAAACCAAAATAGTAAGGACTTTTTTTATGTGTATACTCAC
AAACACATTAATCCCTTAACCCATTTGTGCTCAACACTCCAAAACTATTAGGGAGCACTA
GATGCACTTAAACTTTTCTATTTTCTTGTACCTAATTATGCACTAGAAACTGTCATGATG
ATATTTATTAAAGCACACACTATTTACATATCTCTTCGAACTTTTTAAGAGTATCAAATA
TACGCAAACATATGTAGACTACAATTCACCTAATTGTCTAAATAATAATATGTAAAGATG
TGCGACTCATTTCCTTTTCTCACAATAACAGAAATTTTGATCAATATTTTAAGGTAAATC
ATCTCAAAAAGAAAATAAATTATTTTTCTTATAAAATATAATTGATTTAGCATTTTGTGT
ATACTTGTTAGTGATAAACATTAGAACTGTATAACAAAGAATGTTATAATCAATATTCAA
CAACATTTTTATGTGCTTAATAAATAAGTTAACACCTAACTTTGTACTTTATAATATGGT
AATGGAGTAAAATAGTTTGATATAAATATTATTTTATTTAATAGGTGATGTGGGAAAAAG
GAAGTGGAATATTTGTTATTAATTAATTTTGATTTAATGTTATTTCTTTGAACAGAGTTA
ACTTATCGCGTGACCTCATTTTAGAAACTAAAAATACGCAACGCAATTTAAATGGCATAT
TGTAATTTGGGTTATAAAGAATAAACAACAGTAGTAGACGTACTACGATGAGCATTTGGT
ATTAACAAATTTTGTAATTACCATTTTACAGAAATAGAATTTTTCATTGTTCAATTTAAT
GATACATATATATATAACTAAGTTTATTTATTTAATTTTACGTTATATATTATTTGCTTT
TTAAATATATTGTCTCACGTCTGTATTGTAATTTAATTTCTTCTCCGTTGCGCGAAGTGA
AAATGTGTGAAAAAGGGGAATTTGCTCGAAAGGCGTAGACATTGACTGACTTTATCACAA
AAGTGCTTGGTCCCGCACAATCAGTAGGAAACAGATCTGTAATCTATGGAAAATTGAAAT
CCAAATTGAGAATTTGTTTAAAAAAAAGATGAATTCAGCATATGGAGTGTCACAAAAATG
CAAAAGCAAAAAATAAAATAAAATTGTCACTATTCACGTGTGGATTTGTCTTTTCCTAGC
GTATGTTTTGATTTTCGTCATGAAAAGTTTAGAGATTGTAGGCACATGTGTTTTGAACAT
TCAGCATTCCTTTCTTTCGTTGCCATGGCAAAGTTTGATTTTTGAGGTTGCTAGACCTGT
CCGGATTCACACTGTAGTGAGCCGTCGTAATAAATTAGCAGCACCCCTGAACGGAACCAA
ATGATGCCGTGCTCCCCTCCCCTCCCCTCCCCTCCATGTCCCGTCCCATCCGTAGCCATG
CTAGTAACAGTAGCGCCTAGCAGCAGCGGCGGTACAGTCCTAGCTCGCCGTTAGTCAGCT
TGCATTAACTGCCTCAGTCCTCTCCCCTTCTCACTCTGACCACACACACACCCATCCCTG
CCACCCTCGCCTTCCCTTTCAACCATTGACCCCAAAATCACCAGCACCAACGGAGAGAGA
TCACTGCGCCGTGCCACTCACATCACATCTCACACTCACGGAGGGGTCACTGCTGGTGTT
GCGCCCCAGCGCGGCCGATTCGATATTCGCATTCCCTCCACCACCCTCGCCTTCCCCCCT
TTTATCACCCCCTTCCCGCCTCCACCCCACTCCACACACCGCGCGCCGCCGCCGGCGCAC
CACCACCACTGCCCGCCACAATGCCGCCACCTCACCTGCTCACCATCCTCCTACCTCTCC
TCCTCCTCCTCCCGGCCCCTTCCTCCGGCTCCCCGGACCGCGACATCTACGCGCTCGCCA
AGATCAAGGCCGCCCTCGTGCCCACCCCCGCATCCTCCCCGACGCCGCCGCTCGCCGACT
GGGACCCGGCGGCGACATCCCCAGCCCACTGCGCATTCACCGGCGTCACATGCGACGCCG
CCACCTCCCGCGTCGTCGCCATCAACCTCACCGCCCTCCCGCTCCACGCCGGCACGCTGC
CCCCGGAGCTCGCCCTCCTCGACTCCCTAACCAACCTCACCATCGCCGCCTGCTCCCTCC
CCGGCCGCGTCCCCGCGGGCCTCCCGTCCCTGCCATCCCTCCGCCACCTCAACCTCTCCA
ACAACAACCTCTCCGGCCCCTTCCCCGCCGGCGACGGACAGACAACGTTGTACTTCCCGT
CCATCGAGGTCCTCGACTGCTACAACAACAACCTCTCCGGCCCGCTCCCGCCCTTCGGCG
CCGCGCACAAGGCCGCGCTCCGCTACCTCCACCTCGGCGGGAACTACTTCTCCGGCCCCA
TCCCGGTGGCCTACGGCGACGTCGCCAGCCTCGAGTACCTCGGCCTCAACGGCAACGCGC
TCTCCGGCAGGATCCCGCCGGACCTGGCCCGGCTGGGCCGGCTCCGGAGCCTCTACGTCG
GCTACTTCAACCAGTACGACGGCGGCGTGCCGCCCGAGTTCGGCGGGCTGCGCAGCCTCG
TGCTGCTCGACATGAGCAGCTGCAACCTCACCGGCCCCATCCCGCCCGAGCTCGGCAAGC
TCAAGAACCTCGACACGCTCTTCCTCCTCTGGAACCGATTGTCTGGCGAGATTCCGCCCG
AGCTGGGGGAGCTCCAGAGCCTCCAGTTGCTGGACCTGTCCGTCAACGACCTCGCCGGCG
AGATACCGGCGACCCTGGCCAAGCTCACGAACCTCAGGCTGCTCAACCTGTTCCGGAACC
ACCTCCGCGGCGGGATACCAGGGTTCGTCGCCGACCTGCCGGACCTCGAGGTGCTGCAGC
TCTGGGAGAACAACCTCACCGGCAGCCTCCCGCCGGGACTCGGGCGCAACGGCCGGCTCA
GGAACCTCGACGTCACCACCAACCACCTCACCGGCACCGTGCCGCCGGACCTCTGCGCGG
GCGGGAGGCTCGAGATGCTCGTGCTCATGGACAACGCCTTCTTCGGCCCCATCCCGGAGT
CGCTGGGCGCGTGCAAGACGCTGGTGCGCGTCCGCCTCAGCAAGAACTTCCTCAGCGGCG
CCGTGCCGGCCGGGCTCTTCGACCTGCCGCAGGCCAACATGCTCGAGCTCACCGACAACC
TGCTCACGGGCGGCCTCCCCGACGTGATCGGCGGCGGCAAGATCGGCATGCTGCTGCTGG
GGAATAACGGGATCGGCGGCAGGATTCCGCCGGCCATCGGCAACCTCCCCGCGCTGCAGA
CGCTCTCGCTCGAGTCCAACAACTTTACCGGCGAGCTGCCGCCGGAGATCGGCCGGCTCA
GGAACCTGTCGAGGCTCAACGTGAGCGGGAACCATCTCACCGGTGCGATCCCGGAGGAGC
TCACGCGCTGCTCGTCGCTCGCCGCCGTCGACGTCAGCCGCAACCGCCTGACCGGCGTGA
TACCGGAGAGCATCACGTCGCTGAAGATCCTGTGCACGCTGAACGTGTCGAGGAACGCGC
TGTCCGGCGAGCTCCCGACGGAGATGTCCAACATGACGAGCCTGACCACGCTGGACGTGT
CGTACAACGCGCTGACCGGCGACGTGCCGATGCAGGGCCAGTTCCTGGTGTTCAACGAGA
GCTCGTTCGTGGGCAACCCCGGGCTGTGCGGCGGCCCGCTGACCGGCAGCAGCAACGACG
ACGCCTGCTCCTCGTCAAGCAACCACGGCGGCGGCGGCGTGCTGTCGCTCCGTCGGTGGG
ACTCGAAGAAGATGCTGGTGTGCCTGGCGGCGGTGTTCGTGTCCCTCGTGGCGGCGTTCC
TGGGCGGCCGCAAAGGGTGCGAGGCGTGGCGCGAGGCGGCGCGGCGTCGGTCGGGGGCGT
GGAAGATGACGGTGTTCCAGCAGAGGCCGGGGTTCTCGGCGGACGACGTGGTGGAGTGCC
TGCAGGAGGACAACATCATCGGCAAGGGCGGCGCCGGGATCGTGTACCACGGCGTGACCC
GCGGCGGCGGCGCGGAGCTGGCGATCAAGCGGCTGGTGGGGCGCGGCGTGGGCGGCGACC
GGGGGTTCTCGGCGGAGGTGGGCACGCTGGGGCGGATCCGGCACCGGAACATCGTGCGGC
TGCTGGGGTTCGTGTCCAACCGCGAGACCAACCTGCTGCTGTACGAGTACATGCCCAACG
GCTCGCTGGGGGAGATGCTCCACGGCGGCAAGGGCGGGCACCTCGGGTGGGACGCCCGCG
CAAGGGTGGCGCTCGAGGCGGCGCGCGGCCTCTGCTACCTCCACCACGACTGCGCGCCGC
GGATCATCCACCGCGACGTCAAGTCCAACAACATCCTCCTCGACTCCGCCTTCGAGGCCC
ACGTCGCCGACTTCGGCCTCGCCAAGTTCCTCGGCGGCGCCGCCGGCGCCTCCGAGTGCA
TGTCCGCCATCGCCGGCTCCTACGGCTACATCGCCCCAGGTACGTATCATTCATCCATCC
ATCCAACACATTCTATCTGAATCAAGGCCGGGCACATGAACAGCACACACGATTCACTGG
TCCTGCCTCAAGAACTGCAGCATGTCATGTACTACTTTGCTTCTGGTCTTGGATTTTAGC
CTAGTTTCAGGCAGCACTTGTCTGCACCCCCCACCACACCGGCCATGTTCTTGTTGCCAT
CTGCAATGGTCAACTAGAGAGAGGACAAAGGCATTGAGCTGCTGGTACTAGTAGTGGGTT
GTACCACTGGGGACAGTGAGTGACAGTGATTAGTGGTGGTGGTTGTTAGTGTCTGGTTTG
TCCTGCCCTGTTTCCTGGATTGCAGCATACAATTTGGGCTAAATTAATTTCCCAGGGCCT
GGATCTTGAAGATCTTGTTGCCAACAGGCCAACTGTTCTAGTGTTATTAGACAGGACAAA
GATCTCCTTTTTGCACTTGATAATCATGGGCATATCTTGTTGCCAAATGAACTAACTCAC
TTATTATGTTCCCCTTCCACGTTGCAGAGTACGCTTACACGCTGCGGGTGGACGAGAAGA
GCGACGTGTACAGCTTCGGCGTGGTGCTGCTGGAGCTCATCACAGGGCGGCGCCCCGTGG
GCGGGTTCGGCGACGGTGTGGACATCGTGCACTGGGTCCGCAAGGCCACAGCGGAGCTCC
CTGACACCGCTGCGGCTGTCCTCGCCGTCGCCGACTGCCGCCTCTCCCCTGAGCCCGTGC
CGCTGCTGGTCGGGCTCTACGATGTTGCCATGGCCTGCGTCGAGGAGGCGAGCACCGACC
GGCCAACCATGCGCGAGGTCGTGCACATGCTCTCGCAGCCCGCCCTTGTTGCTCCCACCG
CCGTCGTCGATGAGAACACGGCCCGCCCCGACGACGACCTCATCCTCTCCTTCTGACGGG
CATGTCGGCGATGAAGATCGTTGTGGCCAAGCAGTTAGCAGGGAGATGATTATGGTAAAT
GTATTCTCTAATTTTGGGTTTAACCACTTGGTGCTTAGGTATGTTGTGGCGTGTGGATGT
GTAATAACAACTACTACTCCTAGTAGCATCAGTACGTGCTCCCTGATGCTGAAAGCCAAG
GCTGCGAGAGTACCTGTGACTGGATGTATAATTTGATGCTGAATGAACGAATGTACATGT
AAATAGTACTCCCTCCGTTCCTANNNNNAAGTCTTTTTAAAGGTTTCACTAATGGATTAC
ATACGGGTGTATATAGACATACTTTAGAGTATAGATTCATTCCTTTTGTTCCGTATGTAG
ACTATTAAGGCAATCTCTAAAATGTCTTGAATTTTGAAACGGAGGGTGAATAACGGCATG
GTCAAGC