morexGenes - Barley RNA-seq Database

Contig contig_51267

Source Contig contig_51267

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_51267 (4304 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_51267

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_66226	1	624 bp	AK250482.1	Not available	Available	None
MLOC_66227	1	653 bp	None	Available	Available	None

CDS Structure of MLOC_66226

CDS Structure of MLOC_66227

Contig Sequence (4304 bp)

>contig_51267 4304 assembly3_WGSMorex_rbca.fasta
GTGCCAGAACCATGAGTTGGTCGCGAGATCTTATGGGTTTCANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGTTGTTGTT
GTTGTTGGCAATGTCCAAGAAAAAACATAAAATAAGGTCATCTGCAGCTTCAACCATAAT
GATACATGTTTGCTTCAGTAAACATAAATGAGAGCAAAAAAGAGCAAATGCTACACGCAA
GCCTTATATTGTCAGACATACAAGCAATCCTTGACATGGAGTAGGTGGCCAGGTGGCTGG
GCGTATGGAGAAGTACAAATGTAAACATATCATAGGAGAGAAATCCAGATTTGGCACATA
CAAGGGATCGAGGAAGCACAGTGCACCTTCAGGGCAGGCATTGGGTGCAATCATGGAGAC
ACTAGGAAATTGAGTTATCTCTTGTTAGGAGTTCCTTTTAGTTTGGAAGACCTTAATCCG
GATAGAAAAGACATATTTTAGGTACTCCCTCTGTAAACTAATATATAGGAGAAGCATGTA
TTGCTTTAATCAAGCGGCATTATGATCACAAGTTATCTAAGCCTTACAACAACCCTTGCA
CATCAGGGACGAGCCCTGGAATTAGGGCTCTAAACAAGCTGAGCTCAAGCAAATATAACT
TGGCTCGGCTCGAGCTCAATTCAATCCTCAGCCCAAATATGGCCTCGAGCACAGCCTATC
GACATAACGGCTCGAGTTCGGCTTGCCAAAAGCTAGAAACAGCTCAATCCCAGCTCATTA
AGGCTCACAAAAACTCTTGAGTAATATTATTAATTTTTATCATATTGCCAACACGCTAGG
CATCGACTGCCGTATGCCTTCACAAGCCACTCTTTTATAGATAGTCCTCCAACCCCACTC
TTCTACAACAGGTGAGGTGGTACTAATCTACTCAGCCCTATTGTTTGTTACATGGACTAA
GAGATGGGCTGATGCACAAGTATAGCTACAAGGCCATGAATGTTCTTCGGCCCTCCAGTC
ATTGCTACGTGCAGCTTTTCTTTTACCAGACTAGGCTTAGCTTCTTGTGAATTGCTCATA
TTCTGATGTCAAGGTGGTTTTTAGGGAACAAAGAGTTAATATTTATCGGGTGGGCTGCAT
GGTAGTATTACACCAAGCCTTATCGAGCGTTTTCGAACCAAGCTTCTCAGGCTCACAAGC
ATAAGGCCAATCTTGAGCTCGGCTTGTTTAGGCCTCAAGATGAGCCCAAAACGAGCCAAG
CTTGAACACTGTGACGAGCTCAAACTTTTTTGACATCCTTGCCTATCACAGGTTGTTGAC
GGTGAGTACAGATCTTGAAACCCTTACCCTACCAAATTATCCCACTCTGAACCAAGGTTC
CTAGCATTATAGCCTCTCTTTTTTTAATTAACTCAAAACAACAATCTAAATATATAACAA
AAATATAGTTACCAGCAAAGGTTGCGTTCAAGGCACAGTTCTCAAACTATAATGTAAGCC
ATTTTAGAATTTCCAGCAGGAAACTTTTTTATTCATTTTAATGAACTTAATACAATCTTA
TACAGATATATAAGAACAATACAACAACCACAATATGTTGTAACAGTAGATCATATGTAG
AGTCAAAACAAATTCAGCAATCATAGCATCATGATTAAGGCAATGTGAAATATGTTGTGC
AACTCCTCGTAATTTGAAAAGAGAAGTTGTAAAGTATAATTAATACAAGTTATTATGAAG
GGATTAAATTTACAAGACATAGTTTGAATATATACAACTTAATAAGATTGGATGGCTAAG
ATGGTTTGCAGCATTTAACCCAATTCGTATATTTGAGATTGAAATAAATGATAATACCAT
AAATAAAAGAAGGCAACTCAAAAAAAGAACTTAGATTGAAATGGAGCATGCTTTCACTCA
GTACCAGCTTACAGTGGTCAACTGAAAGATTATAGTCAAAAGGACGACTTGAGCCGCTGC
AGTACCGACTTACTAACTAGTAGCACAACTAACCACAGCTAGTAGACATTTTCGTTGGAA
GCCAAGTACCGACCAGGCGAGCAACTAATCAGAACTGAATCTAGGTCATTGTAAGGGCAT
GCTAGTTTGATGTCTTATGTATGTATTCTAGCTTATGAGAACCCAGAACAACATGTCTGG
AGTATGTCATAGAAATATTTATTATAATAATAATACATTGATGTATTTATGCAAACCTTT
CTCTGCTGAATCTCAGCCTCCTTTGCATCCAAAAATTGCTGGGGCACACCACTGGCATTC
TGCTGCGCACTTAGAAGGAGGCTCCACAGCTCCCTCATGAACTTTATTGTATTCTTCTCC
ATGAACCCCGTCAGCTGGATCTGTATGTACTTCCCGTCCACCTCCTGCAAAACAAACAAA
AACCTTGTAAAGCTCCTAAGCTCCTACTATTTGGCGGTTAACTTTTACAGGTACAACACA
TACTTGTTTCACAAGTTCACAAGAAGTTTCAGTAAACTAATCCAATTGGTATTTTGCTAA
TCCAGTTGGTATTTTGCAAATTGGAAAATGTTGTGGTTTAGCTCCACAAGGTGGCTGTGA
TTACCTGTCTTACACTATCCAAACAAACCTATGAGAGACTTTGATAGTTCCCGAATTACA
TGTGCATAATTTCAGTTTTCATTCCTGACTCCTGAGCTACACGATGAAGATAGTTTGGTT
CTTTGCTTACAATCTTAAAGCTGAATGGACCAAATCCAATATATCCAGAGATGCTTTACA
TGAATCGAATGGAGAGTTCAGTTTTCAATTAATAGGCATATCTCAATAAAAAAAAACATC
TGTGTTTGTTCAACGAGAAACAAGCATATGTTAAAGAAGTTTATCTTCAAAAAACACACC
TTCGCATCGAGCAGGCCGTAGATGAAGTTGATAAGCACTTCGTCCTCGAACCCAAGAAGC
TCAGTGACCCGTGTGGCAATCCACGGCTTCATCACGTCCATCTTCACCTTTGACATGTCC
ACCTAACCCAAGGAAAGAAACAAATTAGCGTTTACCTTGAACCCACGGCAGATACTCCCC
TTCTGGACGCTCATCGGCTAGAACCCGATGGAGGCATAGGGCGAGAACGAAAAAGCTAAC
CTGATGGTCAAGCTCAGACGCGAACTTCTGTGTCTTCAGCAACTTGGCATGCTTGTTGGA
GAATCTGGTATCCTGGTCGGCCGACGTCCCCTGATAAAAACACGGCGAGTCAGCGCAGCT
GTCACAGATCGGACGAACCGGAAAAAACGAAGCGAGATTGGCGAACTAAATCAATGCGGG
GAACCGTGTCCGCTTACCCGGAAGAAGCCTCCTGACATCTTCACAGACGGGCGGCGGCCG
CCGGCTTGGGGGGGGAGGATGCCGAGGAGGGATGGCTAGGGTTGGTGCCTTGGGAAGACG
ACGACGAGTTGGGGATGCAGGGGAGAAGAAGAGGCCGCAGGAAGAGCTATAGACAATAGC
CCGATCCAAAACAGTCTCCCTGTCTCAGCTGCCTGGGCCGAGCCCACAGGTCTGTGGGCT
TTCGAGTCTGTTCACTCGTAGTACGATGTTCATCACGATTGAAGGAGCAAAATTACTTCC
ATGTCGTTAGGGTTTTGTTCCTATCGTCCTTCCCTCTCGGCAAATTCCGGTTCTTCCTAA
CTCGTGATCAGTCAGTCCTAATAGATGACGGTTAGTAAAAAAAAATTGACCGGCTACTAT
AGGGAAACACCCCACAGATGGTTAGCATTTTCAACGGTGACTCTGAGGCGATCCAGGTCT
TCACGTCGCCGTCTCCCATTTTCTCATCGCTGCCGCCGGCAAACCCCTCCGTTCAAATCC
AGTTTCATCCAATCCCTAGCCAACAATCATCCCCCGCCCCCCAAGTTAGGTCTCCCGCAT
GTGTCTAGGGCACGCGGCTGTAAAACTCCCAAAATCCTAGTTTCGTGTTCTGGTTTCTAG
TTTGTGGTTTTCGTTTCGGGTGCCACATGGCGTAATAATAATTTCCGAGTTTAAGGGTAT
ATTCGTGAAAGGCTCGACAGAGCGGTGGCTACTCCTCAATGGTGGAATAGGTTCCCTCGT
TACAAGTGGTCAATGGTGGAATAGGTTCCCTCGTTACAAGTGGTCAATGGTGATCCACAA
CATTCTAATCATAGACCCATTGTTTTGGACTTGGAGGGTGGCACACCTATTGAAAGGACG
TGGATGTCGCTAGAGGGGGTGAATAGGCGCTTTAAAATATTTACGGTTTAGGCTTGAACA
AATGCGAAATAAAACTAATATTTAATTTGTCAATCACAAAACCT