| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
No map location |
Predicted Genes from contig_51259
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_66222 |
1 |
3889 bp |
None |
Available |
Available |
None |
| MLOC_66220 |
2 |
688 bp |
MLOC_66220.1 |
Available |
Available |
LOC_Os02g43280.1, FRAME:+1, EVALUE:1e-52, 13102.m04804 protein aldehyde dehydrogenase, putative, expressed |
| MLOC_66221 |
1 |
2185 bp |
MLOC_66221.1 |
Available |
Available |
LOC_Os12g12690.1, FRAME:-1, EVALUE:1e-19, 13112.m01340 protein transposon protein, putative, Pong sub-class, expressed |
CDS Structure of MLOC_66222
CDS Structure of MLOC_66220
CDS Structure of MLOC_66221
Contig Sequence (9433 bp)
>contig_51259 9433 assembly3_WGSMorex_rbca.fasta
TATATATATACTAAAATTTTAATATTAAAAGCAATTTATAAATTATTCGGTTAGTCGTGC
GTTGCACGTGCATGCTAACTAGTTATTAAAAAGGCCCCAACTTCTCTTGTTAATGTGGAT
TTGGCAAAAGAAAAAAAATGTGGATTTGGGTAACCAGGATCAATAAACTGCCCGGTTCAC
TCCGCATGAACCACGACGCGCTACCAGGCTCCGGCTGGTTGCCTATTTAGCACACGTCGG
GTCGCCCGCATGCTCAAGCCAAGCTAGGCCAGTTCGCGCCCCTTCCATCCATCCATGGAA
ACCGTGCAGGAGAAGCCGGCCCTTGGCTTGGGGAGCCTCGTGAGCAGCCTGCGAGTGGTA
TACAAGAGCGGGAGGACCAAAGAACTCGCATGGAGGCAGTCGCAGCTCAAGGGGCTCATC
AGGCTCCTGACGGAGAAGGAGGAGGAGATCTTCGACGTGCTCCGCGATGACCTCGGCAAG
CACCGGACTGAATCCTTCAGGGACGAGGTACATTATAGTACATACATAGACGGTTTGTGC
CTCGTTTGGCCAAGTTCTTCCCTGATCTGTGCTGCTCGTCTTTAGGTTGGGGTTCTCGTC
AAATCCATCAAGTACACGCTGCAAAACCTGGAGAAATGGGCGGTCCCTGAGAAGGCAAGC
CCTCGCCATAGCTTGGAACCTTAATCCGGCTGCTGCTTTGGATATAGGCTTGACTTGTTA
TTTTCGTCAGTGTAGGCTCCTACGCCGTTGGTTTCTTTTCCGGCGACGGCGCTGGTGTTA
CCGGAGCCGCTCGGGGTCGTGCTCATTTTCTCCTGCTGGAATTTTCCATTAGGTGACCCT
CTTTAATTTGCTCCACACCCCCTCCAGTTTCATTATATCTGTGCTCTCAGTTCTTTATTA
TCTTCCCAATGAATAAACGAATTCTATCATCTATTTATTGACCGGCAATTCTCATATCCG
TATTGACTTATTAATGACTTGACTTAGACCGCCGGTGCCCACTCGAAATCAGAGGGTGCT
TGGATACGTTTTAGTTACATGACTAAAAGTAATGAGGCTAAAACTTGCTAGTCTCACCCA
TGCTTGGATTCAAATATTAAAGAGACTAAAATCAAGTTAATNNNNNNNNNTTATCCTCCA
AACCCTCCAATCCAGAACTTGCATGAGAATTTAAATGAGGAGAGAGAGAACTAATGCACA
TTTTAGTAGGGGTACCCTTGACTAAAAGATTTTAGCCTCAAAACTAGTTTAGTCTCTCTT
TAGTCAGGGTGCTTGTAACTTTAGCCTTTTAAAAAGACTAGTTTTAGTCAGACTAGTTTT
AGTCTCTTGGATTCAAACATCCACTCAGTATTAAGCTCTTAAGAAAGTGACGCTGATCTT
ATATCTACTAACTGAGCGATTTAGGAGGTTTTCTTAATTTGTTTCCTTTTATCTTTTCTT
TTCACATGAGTGGTAAGAATGTAAAATAGATCTAAGCCGTTAATTACATTAAATAGTGGA
TTTGATTAAGAACGTTCGCATGAACAGACGTCATACATCATCTACTCGCAACAAGATACG
TTAGACATCATCGGTGTCCTAGCATTCTTTTCGATAGAAATCCATACCATTGCACCTTAG
AATTTCTCTCGACCACAGAAGCCTTGGGTAATCCTTCTTTTCGGAAAAAAAAACTACGGA
TCAATTCTCATTAATAGCAGTGTAGCATCAAAAAGAAGAAGAAAAGAAAACGAAGATGAC
AGTACGAGCATAACAAACTTTTAAAACGACGATGACAAGCTGTTGCTGTCTCGCTGTACG
CTCACATGGTTTACTGCCAAAGTACCTCACATGCTCGTACCTCCTAAGACGAGTGGAACT
GTACGATGTGTGAGTTTAAACAACCTTTGCGATGGCAACAAGCTAGGTGTACTCTTATGC
ACTTGCGATTTTGACAAGTGCGTTCCGTTTCATCGATGCATCTGGTTGGCTGGTCCCTTG
AATGATAGATTGATATGAGTAACATCATCTATAGCCAGACTCCTCAATTTTAATCCTTCA
AACGCCCGTGGGCGCATTCACGCACGTCCGCAGACGCATCCGAACGGCGTCTCATATTTT
GCTCGGTGCATCCACATACTTCATGTCTAAATTCTTAAATTCATACAAAGCTATGCACAT
CGATCATCCGATACAAATTATTCGAATTTAACAATTTTAAACAAAAGCAAACGATAGCAT
AGTTCAACCAAACGAACATGCCAAAATAAAATCAATGTCCGACCAACAAGTGCTGTCGGA
TCACTCACCGGACGAGTTCGTCCATGTGTCCTGCTCCGCCTGGGCATCCATCTCCGCCTA
CAATCGGGTTTCGTCCTCCGCCTACATCCTAACAACGATCGCCGCATGCATCCTCGCCAC
CTACTCTTCTGTCGTAGCCATTGCCGCCCTCGCTGCCTCCAACGCTCTATGGTCGTTGAT
CTCCTTCTTCCTGTCCCCAAGCCATTTTTTAACATGTTCATCCAAAGTGGATTCATCCGC
GAGCATAATTTTTGCATCCTGCACGTTGCGTGAGAGTTACAACCTCTCCTTCTCGAGCTC
AATATTTCCAAATGTCTGGGCCTTCTCGAGTTCCCATTTGATCGCCGCCTCTTGCTTCTC
CAAATTGATCACCTCCCTCTCGATTTGAAGCCGCCTCTCGGCCTTTGTCTGATCACAGTC
CATCGTCTCCCTTTGCGCGTCTAACATAACCTTGTACCTCTCCTTTTTCTTGGTCTCCCT
TGCCGAAAAAAATACCCGTCCATGTGGATGACATTTTTGTAGCCGCGGCATCACGGGCGG
TCGTTGCCTTCTCCCACTTAGTTTCCATGAGTAGCCGGTTATCCTTTGGCACTGTAGCTT
TTCCTTTGATGACGACAACGTCGTCATCATTGTCCAACCCAATGGATTGGTGGCAGCTTG
AGCCATCATTCCTCTTCTTTCCGGCCTTAATGTCGGCCACAACCTGTTGCCACTTTGGGT
TGCCATCCAATAAGAGCCAACAATGGCTAAAAGTAAATGGCCTCTTCTCGGTCTCGTAAT
ACAAACTGGCCTCCACCGTGACCTAGCATACAAAGTACGTATGAGCACAAGAATGAAAAA
CACATGAACATATTGAAATGACAGTAAGATGAGGCGATCGAATTTACATGAGTTGCCACT
CCCATCCCACTTTGCGACTGTTTGGTCACTTGTGAATAGTAACCGACGTACTTGTTCACT
TCTCCTTGTATGATCCCCCATCGATGTTGGAGAGATGCCACATTGCGGGTGCTCACGATA
GGATTCGGCTCCACATACTCCTTTCGTTCATGATAGTCCTTCAGAATCTTCTCCCAATAC
GTGCTTCCCTTTTGCTCCGTGCCATTTATTGGATCCAATGCTGCATTTAACCAAGGTTGA
ACCAACAAGATATCCTCATATCTTGAGAAAGCAAGCCCTCTTGCCTTCGTCATCTTGCCC
TTCTTCTTCTTCTTCTTGGTAGGATTGGGATCGGATGTTGCCCCAATCACAAATGTGTCG
GTGTTCTCCATTTCATATTCCACATGGGTTGGATCTTCATTCTCATTGATCATATTTGAC
AAGTATGTCTCCTACACGTTCAATGTTTGCAAGCAATCATCTTGTGCTAACTAGTGAACT
ATACGAAACATTAATCATTTGATCGGACAGGAGAAAACGTACCCGGTCTTGTTGACACAT
TTCTCGAACATGTCGTGTGCAGCCCGGGCACTTGGGTTGCCCGTGCTCACCCGCTCCCGA
ACGAGCTGCGAGGACTCACACTCTTGGACCTACGGCTGCTGCAATGCCGAAAATCTGTCC
GGAAGGATCCAGCAGGCCGTCTCATCCTCCTCCTTGGTCTCGATGATGCCGGACGGTACA
ATCCACGTTAGCGCTTGCATGGATGGGGTAAGGGGAGCCCGGTGCGCCGAGGGAGAAATC
TCTTCGATGGCGCCCGCATTTAGCTGTGTGGCCAACTCCCTCTGTGGCAGCCGGCGACGG
CGCAGCTCACGGGCGATGTTCTCCGGCTTGCAAGATGAAGTGGAGGAAGGCCTGCCGATT
GGACGAGGCAGACTATGTCTCCGTCACGGAGGTCTGGATGGGGTGGAAGACATCACGACG
ACGGATCGGGACAGGTGGTGAGGCTGGAGAGGAAGGGTGCTGGATGGTGAGGGGTCGGAC
GCGGGAAATGTTGGCGGGCGGCGGGAGGAGGAGGAAGGGTTTTGAGGATTTGGTGCAATC
TGAGATAGGGTCGGGCTGTCGGGTCCGACGTGGCAGGTGTGCCCGAGCGCGCCTAGGTTC
CCCCATATACGTCCCATATTTGGGTTGGAAATGGGGGGTGCCGGTCAGCCCGGGGGTTTG
AGAGGCCCATCTGTGTCTATTTTTTGTGACTCGGTAGTGATGGGGCGGCATGCGAGGGCT
TTTGTGAAGGGTTTGAGTGGTCCGTCTGTAAATGCTCTAAGGGCATTTCCAGCGTCGATC
CTCGAATTGTCGCTAAGCATTTGAACCCTGCGCTCCGGACATGTTGTTTCATCTGATGTG
GACTTGTATCGACCCGTCAAATCGTGTGAACACTTTTTTTATAAACCGTTGACAAACTCG
AGGGGCTTCGCGAGCGTCCGACAACATCCATGCCCACTTCTTGCCATCCTAGCTCACTCA
AAACACGCCTCCTTCTTCCGTGCGTGTGACGCCCGGCGTTAGCTACCGCATTCATGTCTA
TATATGGAATGGCCGCTTCACGTTGAAGCCAACTCTAAATGGATGGGGACTCTCACTGGC
TCCGGCATTGAAGCGCCGTCCGCTCCATGCCCAGCTGAGCATGCCTTCCCACCGCATTCA
AACAACAACAAGAACAAGAAAGACTTTAGTCCCAAATAAGTTTGGGTAGGCCCCGTCGCA
TTCAAATGCATCCATTAAATCCGCGCATGTGCTGATAAACCTATTCTGGTCACACGTCCG
TTCACGAGCCGACCGACATTAAACATAACGTCACATAAGCTCCTCATGTCGGCTCCATAT
TTAAAGGAGGCTAAGTGACGGACAAGAATCACACCACTCCTCCGCTCCTCATCACCTCCT
TCCACCATTTTCTTCACCCTTTCCATGGCATCCGACGAACAGGAAGAGCAGTTCTCCGAC
ATAAAAGTGGGTTGGGTGGCCCGCCGAGTCCACTGGATACACGAAAAGCAACTCATAGCT
CCACCTCCCTCACCAAGCCCGACAGTGCAAGTTGCCGCTTCACAGCTGCACGTGGTTCGA
CATCTCGCTGGTCCAAGCCAACTCGTGGAGGAGTGGCGTGTTGCTCTTGGCAGACATGCT
GTGGAGAACCGCAGAGCGAGCATCGTGGCTATCATAGACGAGGCAGACGTCGTGCCATCC
ATCGTCAACATTGGCAGAACCATGCCCGGTCGGTGAAGAAAGAAGCCGGCTACACACAGA
TCAACAAGTCAGTGGCCAGCGCATCCACTTCTGCTGCTAACATCAAGGAAAGACAACATG
GGAGGTCGCCGCAGTTTTGTTCCCAGGAAGGCCATTGCACACGAGTCGTCGGCATACACA
ACTGTGGTCTCGTCCTCTCTCACGGGCCACCGTCGTTCCCTGCCTAAGAAACCGAGCTTG
ATCCACGCTTCATGAAATAGATGCAACCGTTCCCCTCCTTCTGAAGCACCCCCTTTGTGA
CTCCACCGAGCGTCGCAGTTCGGCATAGTAAACATAAGGGTGAGGAGTATACCTTCGGGG
TTTCCGACACTCTGATGAGCGGGCTGTCAGTCATGAGAAAGACAAAGGGATCCGCTGTGG
CCGTCCGTAGACTAGTGTATTGTGTCTGTATCGTGGGAATGAAGCTCCACGTGGCCACAC
AATGCACATAGTTTTAGTATTTTTGTTAAAATATGTTTAAAATGTAAATATTTTTATCCA
ATTTGTATGAAATCTATTGTGTTTACATGAATTTTGTCTCGTTAGTTCAAATAGTTATTA
AATTGTTGTCCGCGTTGGATGGTAGCCTTTCACATTAGTGTCCGCAAATCGATCCCCTCT
ATCTGCGGACACATACTTGAGCAAATTTACAAGTTGGCGTTGAAGATGCCCCAAAGCCGT
TTCAGTGTTCGTCTTTTTCTCTTCTTCTAACTACATTTCTTTCCAAATTATATGAACAAA
TGCACTATTGATGATATACATTTTTGAAGAACGGATAATTTATTAATTTTAAGCTGATAC
CAATTAGCTCTAATTTCTGCAACGACACTATATCAAAACCTACTCGAGACATATTGAGGA
TGCACAAGATCTAGTTGTCAAAAAGCGAAGAAAAAAAAAACTAAGATCCACTACAATAGT
TTTTAAAGAACCCCTAGGCTTTCCCAGCCACAATTGTTTTGTTGACCATAGAGTGCCCTC
CACATGCCGTTCCACCATAGAATTAAAATCACAAGAAATGAGGTCAAGCTTGGCGTGAAC
TCATTTAAGCAGAAGTTGCATGCATTGTTTTTACTTTTGACAAAGGGTGGATCTCATGGA
TAGGTGATGCATCCATGGAGCGAATAGCAGGGCTGCAATGTTCGAAGCCCTGTACGAAAC
TTAAAAAGAATGGTCTATTCACTAATGAACAATTATATTGTATATAATATAATATAATAT
AATATCTTACATAACAATTGAATATAGATTCTAAAAAAAGGAAATAAAAATAATAGCCTA
GTCTTGTGTGTTTTCATGCTGAATTACTAGTGTAATCTTTAACAAAGAGGCAAGAACAAA
TCTCTAACGAGATAACATTCCATGTCAAAAGTTAATTAAAATTTAGGAATTAGGAGTACG
GCTGTAGAAGCCAAAGTTAACGAGAAAAGATAACGTCCACATGTATGGGCGTTTGCAAAC
CGTCCATAAGCATGGATCTGCGTCCATTTGTGATTGCATTAATCTTGTTAATTTTTGACA
ACCACGTAGGAAGGGGTTGGTGTGTGGGCATTTATCAGTTCGTCCACACGTTTGTTTGGC
GCATGCAGAGGTCGCGGCTGCCACCCCGACGTGTGGTGGAACTGGCGTCGCGCCCACACG
CCCGCATGCCTGTTAGTTGCCATGTCTTTCCAGTGTTACATGGCAACTGAGTGAAACTTC
CGTGCCCACATGCCTATCATTTGTCATGTCTTCTGAGTGTTACATGAAAACTGAGTGAAA
CTGTCATACCCGCATGCCTGTCAGCTACCATGTCTTCCTAGTATACATGACAACTGAGTC
GAACTATCATGCCCGCATGCGTATCAGTTGCCATGTCATCCCAGTGCTACATGGCAACTG
AGTGAAACTGTCGTGCCCACATGCCTTTCAGTTGCCATGTCTTCCTAGTGTTACATGGCA
ACTGAGTGGAACTAGCCGTGCTCGCATGCATGTAAGTTGCCATGTCTTCCCTGTATTACA
TGGCAACTGAGTGGAACTGTCACGCGGGGGCACGCTGGTCCGCCAGGTGGCAGGCGAGAT
GTGCGGGTCGCGAGGGCAGGAGGCCGGACGTGTGGACATTAGTTGTTTTGCCGACACGCA
TGTGTGTGGGCTGTTTTCCTTACACACCACACGGGATGTGTGGGCAACACCCTTTAACAC
CCACACGTGTGGGCGTTATCGCAGCCCAAGTTAATTAGGAGGACAAGCGAATGGCAGCTT
GCTACCTGTTTTGGTGAGAGCAACATGTTGATCTGATGAACTTAATATGAAACGGTAGGC
TCGTTGACTCGCCTGTCACCGTGTCATCTGTCGACGACTTTGGATGCGATCGATCTTGAT
CTGGTCTGGATGTACCGTCTCGCGTGCCTCTACAATTCTATATGCGGTCGACATCCTCCT
ACCGTATTGATGTGGCTACACAGTTTTTGATCGAGACGCCCACACAATTGCCAGAAAGCC
AGCGATCGTCTATTGTCCAACGTATCTAGCAGGCGGCCTGGGAGCGTGCGAGGCTCGATT
CAGTGCCCAGGAGGACAAGTGGCACGGTGATATGCTTGCCCCAACGCCCAGGAACTCCAA
ATGCCCTCTCGACATCCTTTTCAACAGCTTCTTGTCTTTGGAAGTGAAACTTTTTTGGCC
TTTTAGGTTAGAGATGGTGCTGACAAGGGTAACCCATGAAGATAGATATCGTTTACCCGA
TAGTAACCCATGTTGTACTCATGTCAATTGACAGTATAGTGGCAAGGAGGAGCTTTTCCT
TCAGACAGCCTCGGAGAGGACGAAGATCGTTGCAGCACATTGATATCATTGTGAGATCCG
TTCATGCCAAAGAAAGTGTACCAAATCCAAATATCATGTGATGCAACTGCTTCAAGAATG
ATGTTCGGCTTCTTAAAATGACCCTAATATTGTCCTTGTAAAGCCTTCGGGCAGTTTTTC
CATTTTGAAAGCATGCAGTCAAGAGATCCAAGCAAACCTGGCCATCCTCTTGCTTTTGAG
ATTGCCAAGAGCCTCTTGGTGTCTGTCACAGTCGGTTCTCTCACGTAATGTGGTTCGAAT
ACCTAGACAACAACAGTTGCAAACGTCACCATGACATCTCTTCGCGTGCTCTCAGACATC
CGTAGGTACTGTTGGGACTGGAGAAAAACAATGACCTGCACAAATTCACTAACATGTCAA
ATATGCACACTACATAGTCCCCTCCACTTGTGATGAACTTTGAGCGCAACTTCAACCAAC
AAGTAAGCAGCAGAATAACACACACAACATGCACATGTGACACAAGATTTAACGTGGAAA
AACCTCCTCAAGTTGAGGAGTAAAAAACCACAGATGTGCACCGAACGGTCCACACAACTT
CACTATGAGAATGATGAGTACAAAGTATTCTCTAGAACCTCTAGAGAGATTTATCAAACA
CTCTTCACTTCGCCAACCGGCAAGAGATAAAACAACCACAAGAGGCAAGATTTCAACAAA
GTAGAGTACACACATCTTTTGTCACCTTCAGTATTTTGCAAAGTGCTATTAAACACCTGA
ACCAAACAGAACCAAATTTGGCATACAAGTAGACACACAAGTGCCTGGGATTCTCTCAAA
GTTTCAGCTCAATCATACACTGATTGCCTAGTCAAACTATTTGTCTCCCAAAACTACTCA
GTTATGAAACTGCAACAGTCAGAGCGAACAAAATCACTCTCAAAACTGATGCTCCACTAA
CCCAATCCTCAAACCAGCTAACCAGATCAAAGTACTCAAAGTAAGGAACGAGCTCACCAA
GTTTGGGGTCGATCCAAGCATGCTTGAGCCTCGAATCACTAGGTTGAACACTGTCTAGTC
ACATGCAGAAAATCTCGACAGAACTTCCACTTCTTCTTCTCCTCTCTCTCACATGTTCTG
TTTTACCTTGTGTGCTCTCTCTCACTCCCATGAATGGCAGCCACCAGCAACAGGGGTGGA
GTGGCTAGGGTTT
