Map Locations of contig_51242 (6423 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_51242

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_66210 2 1437 bp AK357867 Available Available None





CDS Structure of MLOC_66210






Contig Sequence (6423 bp)

>contig_51242 6423 assembly3_WGSMorex_rbca.fasta
GAGATGAGGTGTTGGGCTAGAGCCGGGGACAAGGGGCTTAGGGTAGTCTTGCCCCCATCC
TGGGATGTCCATTAAACTACTTGTAACCTGCTGTAATCGTCTCCTATGAGACTGACATTC
CCTCTTTTCAATACAAAGAAACGCACATCTCTGCGTTTTCTCGAAAAAACTAGAGAGGGT
AAAACCACAACTTGGTGGCCAATAGAGAACAATAATGACCCATGCTACTAGCATACATCA
TACTGCAGAGTATAGCCGAATCAAATAAGATTCAGTAACTTCTGGATGGAACAAACCTCT
ATTCCACCAACTTCGTTGTTAACTCCCACAGCTTCGAAGGGGCTGACAGATGGTTTTGCT
CCTATACCAACAATAACCTGCATTACAATGTAATGTCAACATAAGATCTCATGGTATGAA
TCCATACGGTTTCAGCAGTTTAAGAATATGTACATCAGCGGATAAACCATCAAATATAAT
AAATATTAGCTGATTCTCCTAGTGATAAGATCATAAACTGCATTTAACTTCTGCTGCCTC
GGCAGACATTTGATCCCGACACGTATTTTGGGCTAATACTACAGTTCACCAAACAGAGGC
TGGCGCCAACAATTTCCAACGACGAGCAGCAGGGTTTCCGAGTAGATTAGTTTGCAGACA
GCAAGAACAATACCGAGTCTGATTCTTGAGAAATCAAGTTGGTTTCCTAATCAAAGATTT
AAAAGACTTCCTCATTCTCCCCCTCTCTACCCCTCCACTGAGCCACCACCATCAGCATTA
CCATGAAACCTCCATACTGAAAACTAGGCATTTTCTACCCATCACACAGCAGAACTTACT
TGTTTCCAAAATTTAGGACTTTGCTTGTTGGTCTAGCTTATTAGCTAACCACAAAATGCA
GCAGGATAGCAGACCTATCATAGGCTCTACTTTACTTCTGAGGGATTAGGTTGTCTACAT
GCTTTCTACTAACAGGGTTTCAAAGATAAGTTGGTTATTATCAAATGCCTTTCAAACATA
ATATCAAGAGGATTTAAGTGGTCATGATCTTTTCATTAAATGTTCTAATATAACGGGTGC
TCTTAATAAGGCCAAGGCCAGCAGTAGGTCAAATGCAGGAATCTTGATGATTTTCATGGC
TTAGGATTTTGGTATAAGAACATGTTGAGAAAACAAAGATAGTAACTGTATCAGCTTCAA
CAACAGAACCATCTTTAAGTATAGCCGAAGACACCCTTCCATCAGAACCAGCATCAAGTT
TGCTGATGAGACCTCCCTGGATACCATAAATATACACATTCAACAAGATATAGTATGAAA
AATCAAGATAAACGAATGATGTTAACGGATTGGTGGAACTCTGTCACCTTTACGAATTTG
ACACCATTTTGCTCATACAGTTCCTCATACTTCTTAGCAAGCGAAGGCGTAAATAATCTT
GGCATTATGTGGTCTTCTGGGAATATTATCTATATACAAAGCAACTTTAGTTATACAACT
GACAATTGCAATGCATAAAGAGAAGAAAAACATGATTTAGATATATCAGAACTGAACAAA
GTAAGATAGTGCCGTTACAGTTGTGTCAAGATTCCAGCCACAAGCTGCAGCAGCTACCTC
CATGCCAATATAGCCCCCACCAATAACAACAATTTTCTTTGATTTTCCCTACCAAATTAA
CCCAAATATCAGTTCAGCAGAAAATAAAAAGTGTGAATATACGAAAGGAATAATTTTAGA
TCACTGTGCCATATCGCACGAGAGAAACCTATTTTAGTACATGAGTAACATCTATCGTTA
TTTTTGTACTGAACATACCAATGAAGATACTAGAGAATCAGCATCAGCAACGTCACGTAT
ATAGTGAACTCCAGGTAAGTTTCCTCCAATCTTCTCAGGTAATCTGAAACAAGCACCAAT
ATTACAAGCACGAACAAGCAATGATGAAATTCATGAAAACCATATGAAACGTACAAGGCT
TCTACATCTACTTCATGTATACAATCAATAGACACTGTTCAGTTTGCTGCATCATTGCAA
AAGCGTGGGAATTTTATTTAACCTGCCTCTTAGGAGCGCAAAGTTATAGCAGGAACTGGT
AATCATGGTAACTTGGTAAGGATATTACAATCTGGTTTTCCACATTAAAACCATTGCCCG
TGTATGCATAATGGATTGTGATATACCTTGCAGCTGCACAACCAGTAGAAATGATAAGTG
ACCCATACTTCAGAATTTTCCCTGATGAAGTTTTCAAGGTCTGTGTTTTGCCATCAAATG
CTTCAACTGGATCCTCATACAGCACCTTTCAGGAAGGAGAAATGGTTTCAGACCAAGGGG
ATTCTTGTATTATTATGTAACACACTAAACTAAAAAAAGAACAGTAGCATCAGAAGTTCA
TAACTACCTCTATGCCATTCTCCTTGTACCACTCGGCAGTCTGCCTCTGGCCACCAGATC
CAACACAGGTATGGAATCCCTGCCACAAGAGAAATATTGGAGTTTTAATGGCTGCATGCC
TGCATTTGCAGATTTTATCTTGATGCTGAAGTGTGCAGGGCACCAATGTACAGTACCAGC
TAAAAGAACGCTGATTCACAGATAGCAACTATGATGACAGTGTAATGTTTACATATTGAA
GCAGATTTCACTCAAGTCCAAACAAATGACACGGGGATAACTTAACTAAATTTATGTCCA
TTATTATGTCACAAGAATGCTCAGCAGAGAAAGAGGCTAAACAGTTTGGTAGTCCCAAAT
CAACGGACCATCACTACTGTCTGCTGCTTCCTATTGTTAAATTGTCACAGGTACTTACAG
GTAGGCGTGCCGGCTTCTTTTCTGGGGGAAACAGATAGCCTTTGGTCAGTGCCGGTCGCT
CGTATGGTGGAACAGCCTGCACCACAATAAGCACACACCATCAGAAATTAACAGACATAT
AGGCTCAAAAGAAAAATGTGGAAGCACTAGTAGTTTCTAGTACGTCCTTATATTATAAGA
TGTTTTGTATATTTCAATATGGACTATATATGAACTGAAATGAGTGAACAAACACACTAA
AACATGTGTATATGCATCTGATTCAGAAAAAAAGTTAGAACATCTTACAATAGTGAACGG
AAGGAATAGCAATTACTAGAAAACAACAGAGCAAAATTATGCGTCGGACAGGGAATAACA
ATGAACAATCGACTTGTGTAATTGTAATAATTAACTGATGCGCGATGGGCATTACCTCTT
TGGAGACGATGCAGAGGCGGCCCTCGGCCATGCCATGCTCGACGAACGTCCTGGCCGCGT
AGCCCGCCGCGTTCCCGCCGCCCACGATCACGTACCTGCAGGCGGTCGATACATGAACCG
TGAGTAGGGACAGGCTTGACAGAGGACAAGGACTGAAGCAGACAGACTCAGATCAGGAGA
GCCTAGCCTAGGGGGCTAAGAGGGAGAGAGCACCCACTCGCGGTTTTGGTTGTCGAAGCC
GGCTGCCGCGGAGACCGAGAAGTCCCCCCGGCGGGTGGCCGCCGATGCGAGGGTGCCGCC
TCCGCCAAGGCGTCGCAGCGCCCAGGACGTCTGCGAGTAGCACCCCGTCCCCGACGCCAC
CGCCGCTGCCGCCGTGGAAGCCATCTGCGCCGCCTTTCGCCGGAGAGCTAGAGCCACCTC
CAAGGGAAAAACAAACCAACGGGCGGCGAATCAGAACTCAAAATGGTTTGGGGGGAGCTG
CGGGGTCGCGACGAGAACCTGAAGTCATAGCCTCTCCCCGCAGGCGGCGGTGCCTGGCCT
GGCCTTATAGGAGAGAGAGGGAGAGTAAATATTTTAATGGTAGGGGAGGATCCCTCTCAA
AGGGACGCTGGCCGTTGCGGCAGGCCAAGGGGCGGGGCGGCGACGACGAACGGGCAGACG
GACGGACGGAGTGGGGAGAGAAGACGGTCCACGTGTACTCTCGTCTTCCGCCGAGGCCCT
CCTGGAATGTGTTAATTGCGTGTGATGCCACTCTTTGACACAAAGAATGTGTAATTGCGT
GTGATGTCTCTCCAACGTTGGCACTCAATTCGTATGCAACTGTCCGACCTTGTTGTATCA
TCTAACAGGCTCATGCATCAATTTGCAAACCGGTTCGGACACATTTTCTTCTACAAACCC
TAACAAATGTAGGGATTTTGCGGATGTCTGAACCGTTGCCACGTCCGTTTTTAACCACGT
ACACCCCATCAATCCCTCACCCATCTTTCCCGCACCACTTAACCCGGTACCAGTCATACC
TGGCCAAACGGCCTGGCACGGCCCGTCGAGACACGTTTATTAAAGGGTCGTGACGTGCCG
GCCCACGTGTCCAGGATCCAGGCCCAAGCACGGCACGAGGGCTATACGGACCGGCCCGTC
GGCACGCCACGCCCACTGGCCTGCTAGAATTTTAGTATTTTAGGCCGTTATTTGAACCGA
TTTCGGCCTAATTTGCTATTATTTGGGACGATTTTGACATATTGGGTTGTTTTGGGGTTG
ATTTTGACCCAGGAACGGCACGAGGCGTGCTTCGTGCCGGGTCGGGCCCGTGTCGTGCCA
CGCATGCAGACTGTCGGGCCGGCCCGGTTACACGGCCCGTTTGGCCAGATCTAGTACGAG
TTGCACACATTCATGTTGTTGAAGAGCGGCCGCTCGATATTGACGTCGGTCTAGAGAAGG
TGTGAACTCTCATTGGCTCCGCTGAAGCGAAGCGTCGGTCGAGGGAGCCGCTCGCGACGC
GTCCCCGATGTATGCGTTTGTTTAATGCTGAAGACGTGTTACTGGATGGGACGGGGCAGA
TATCTATCACGCTCGTTCAAAGCCCCGTTTGTCCGTATGTCGTCATTAAGCAGGCTCGTC
GGTCAAATAATCCACTCTAATGTCGCGCATCGACGCACTTCTACTTGTGATGGTGTTGGG
ATTTTCCTTAAAGAGGAAGTATGATGTAGTAAAATAGCGAAAAGCATTTCCCTCATTTAA
GAACCAATGTTTTATTGAACTAATAGGAAATCACGAAAACAAACAATCAATAATATCTTC
ACATACAAAAGCACATACTTGCATCCAACACGGACAAGAGGGTTGTCAAGCTCCTTGCAC
TCGTTAATTATAAGGACTAAATCTGATGGTATAGGATAGATAAATATAAATGAAAGGATA
ATAAGTTGTAAAAATTATTTTTATATGTTGTTGAAATATATAATAGGTGAATAGACTCGG
GGGCCATACTGTTCACTAATGACATCTTTCTCATGAGCATAATAGCGGTGGGTGCATAAA
TTACTTTTGAGAATTGATAGAAAAACAAATAATTATGATGTTATTCATGGCATGATCAAT
ACATAGGCATTACGTCTGATAAGTAGACTGTTAAACTTAGTGACGCCTACTACTATTACT
TAAGCAATCGACTACTATCCAACATGCATGTATGGTATTAAGTTCGTAACAAACACATTA
ATGCTTGAAGTAAGATGACATAATGTAGATAAAGTAAGACCAAATAATATGTTTAGACTC
ATCGTTGTATCCTCAGTAACAATAATACAAATACGTGTCTCGTTACTTCTCCTGATAGAG
AGTGAGGATACTACTATGCATCAGTTCCTCTAAAGATATACTCATCTACTTGGTCAAAGG
AAACCTATAAATCGAAAAGCATACATAGCTATATGAAATCATACATAATAAATCTTAGAT
TTGATTAATTACTTTTACTAAATAATCTGAACTAAATTCACAATTCATCGGATCCCAATA
AACACACTCCAAAGATTACATTGAATAGGTCTCCGAGGAGATCATTGTATTGAAGATCAA
ACGAGAGAAAGAGAGTCGTCTAGCTATAGCTATGGACTCGTAGGTCCTAGTAGAACTACT
CACACATCATTGGGGAGGCAGAAAGGTTGATGAAGATGGCCTCCGTGGTGGATTCCCCCT
CCGACAGAGTACTGAAAAAGGCCTCCAGATGGGATCACGAGAGAACAGAGACTTGCGGCA
GCAAAAAATTTGTTTCGGATGGTCCCCTAGGGTTTTGGGGATATATGAGAATTTATATGC
CAGAGAAGGCGATGCAAAGGACCCACAAGGAAGTCACAAGGGGGAGAGTGCACCCTAGCC
CCAGGACACACCCCTGCCCTTGTCGCTTCCTTGTGCGGCGTTTGGTCACCCTTTGAAGCT
TCCAGGTCTTCTTTTGCTTTAGAAAAATGTCGTCGTGTTTGGAATCCATTTAGTACCGAT
TTCCTGAAAAGCCAAAAACACGCACAAAACAACAACTAAACTAGGTACTTGGTTAATAGG
TTAGTTTCCAAAAATAATATAAAATGATGTATAAAGCATACAAGATTAATAAAATAATAG
CATGAAACAATAAAAAATTAGAGATGCGTTGGAGACATATGAGCATCCACAAGCTTAATT
CCT