Contig Data
morexGenes
Links



Map Locations of contig_51147 (4500 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_51147

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_66142 2 1576 bp AK372691 Available Available None
MLOC_66144 1 1835 bp MLOC_66144.1 Available Available None
MLOC_66143 1 549 bp MLOC_66143.1 Available Available None





CDS Structure of MLOC_66142






CDS Structure of MLOC_66144






CDS Structure of MLOC_66143






Contig Sequence (4500 bp)

>contig_51147 4500 assembly3_WGSMorex_rbca.fasta
CTAGTTTTTATAATCTACATCATAAGCTGTCCTGTTTGGAGACATAATAGANNNNNNNNN
NNNNNNNNNNNAATCTGGGTGGTTCCAAACAGGGCTTTAGAATTCGCACATGGGATCTGA
CTTACAAAAGTTTGTTCACATGAAAAACCTAAAGATCTGATGTCAGTTCTTTATCATTTC
TGTTTTTATTATTTTTGCAGTGTTTTATACTTTTTATGAACTTTTATAACTGATTTGGAT
CTTTTCACAAAAAGGAAATTTGTATAACACTTAATCATCATCTGTTTTATAAATAGGATC
ATTAATTATTGTAACATGTTTATATATTTTGTAACTTCTTTGGATGAGTGAATTGCATAC
GTTTTTTTTTTGAACTGTGCCGATGTTATCTTCTTAAAGTAGAAAAAGTCACGCGTTGGG
CCAGCAGATGTGGTATCCTCCGATAACGGTGGAGGTGCTTGATTGTCATCCTCGTTGTCA
GACAAACACCATAGTGGGAGATCAACAAGAGCCCATGTTGTCATGTTCAAGGCATTTGGC
TGTGGCATCCCTCGGCAAAGCGGAGGGGGTAAAAGAAGGTGGAGGCTTTCACAAAAAAAG
TCGGAGATGGCTATGGTTATGGGAAGGAGTGAGAGGCGTTTTTTTCCTCATGCAGTTATA
TTTTCTCCTCTACTAATGGCGACTTCCTTTGCTAACTTCTAAAATAAGCTGAAATAAAAT
GTCCCCTATCAAGTTATCCTAGAAACCCAATCAAATTTATTTGTTTTATTAGAACCTACT
AATTAAGATTTGAGTAGTAGGCTTCTAAAAAATTATTTTTGGTTGGGTTTCTAGAACAAG
CTGGATAGGGGATAATTTTTTTAAAAGCCTAAAAAAACATCAAAATAACTGATTGTAAGT
GCAACCATGCAGAGAAGCAAATACTCTGACTATGAAAAAAATAGGGCTCCCATATAACGC
GATGACATCACTGATCCCAAAAAATTCCAAGACTTGATGCACAAGAAAAAGAAATTTCGT
GTATGGATCCATCGTTCGTGTTTGCTTTAGATTCGTGCTACTTTTTTTTACTGTTTTTAA
AATTTATCTTGTTTCAAAGTGTTACATTAGTTTTTCTTTTCTCGTTCCAAAGTGTATCTC
AATGCTTGATCCCAAATGCTATAGACTGACGTTAGTTCTAATCCGTGTTTGAGCGAACAC
TCTGCTGGCCGTTGGATTGAGGCGCACAAATCTTGTTGCGTTCACTAGGAAGGCCATTGG
GAGGGAAGACCTCAGAACACTACGGGGTTTGCTTGTTTGACGTTGCCTTTGGGAACGGCC
TTCGTGAGGGAATTTTCCCCCTCTATATTAGGGTCATGGCAATTTCTATGTGTAGCAGGG
TAGTTTTATTCTGATGCACATCTACGTAAATGTTTACGTACGTTTACGGGATAGTCTGAT
TTGGCAATCATTGATTGGATTAAGAGGAGGATGAGGCCCATCCACCGCGGAAAATCAGGG
GGGGCATGTTTACATTAGTTGAAAGGTTTAATAAACGTAAATAAGATTTAGTAGGTCTAG
CATTTTTGTTATCCTAATTTACAACATGGCAAATCATTGGCAGTTTGTGGCAAATTTTCT
CCATCTATAGGATAACAAGTTTCCTTTTTTTTCTTGCCATGTGCGAATCTTTGGTACGTA
TGACAATTTACTCTGTTCTAGCATGAAAAATTCCTGGCAATTCTTTTTGCTAGCATGTTC
TTTCCAACAAGGCACAACTTTTTGGAATAGCATGGCAAATATATACTTTTTCTGTCTTAA
AATAAGTGTTGCAGATTTAATATTAAATTAATATAAATTTTAAACTAGATCAACGATACT
TATTTTGACATAGGGGAAGTATGTTATAGCATGGCAAATATATACGTTATATCATGGGAA
AGCATTTCCTTGGAGTGTGTTTTAGATTGAACACTCCCTGCTGGCGTTATGCCCTCAAAT
GAGCCTCCTAGAGGAAATGTTCATTCGCTCGGGTGAGACTTCCTCGAGGAAACGTCGCCG
TATTATTGACGTTCATAATTTTGTATCATGGTGTATCAATAAACCAGTTTCAAAACAAAT
GTGTTATTTTGTGTTGGTACACAATAACACATGACGATACATGTTGACACAAGGAAACAT
CTTGAAACGAGATAAATTCTAACAACATCAAATAATAACATGAACCTCAAAGCGAGTGGC
AGAGATAGGCTAAGGCAACCTGACCCTAAGCCTGGTTATGGCCTCGAAATCCTTCGTTCA
CCGTTGCATTTTTGCGACCGTCCGAGATTGTTCATCGTGTTTAGCCCTTGGGTCCGAACC
AATTCTACCCTCTCAATGCAACCACGATGGATATGATTCAGGTGAGGTAGATAAACCACT
CTCTTAAGATACACCCACTCCATGAATGATTTGTGGACAGTAATTATGAATTTTAAATGT
ATTTTAGAACTATGATATCACACTATTATGACATTAATCTCTCATGTCACTGCAGTTGTA
ATTATGATTTTGAATACTCCTAACTAAAACAGAGACCATTTTCATGTGCATATTGGATGG
GTGTGGCTTGCTCCCATCTACTCCTTCTGGGGTCAAAAAACGTCGTACATTATAGGACGG
ATGTAGTAGATGAGAATTAACTCAGCTTCATCTAAGTCCTACACCATTTGACTATACTTA
AAGAGTCTTATTCTGGACATCTTATTTTTATGTTTGTCTGATTAATCAAATGTTATACTC
TCTCTGTTCCTAAATATANNNNNNTTAAGATATTTCATTAGGAGTCTACATACGGAGTAA
AATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCGTATGTAGTTCATTAATGA
AACCTCTTTAANNNNNNNNNNTTAGAAACGGAGGGAGTAGGTGTTAGATGAGACTTTGCT
AGTAATTGTTTTGATATCCCGTTAATCATGATGACGAGCAGAGCTTGGGAATGCTGACGG
TCTCATCCATGCTGCAAACGTCGCACCTTCGTCCTGCCGGCTGCCACAACACAACCAGCA
CCTGCTCGCCGCCGCCCTCGGCTTCATCGCCTGCCCGGATCGCCTTCTTCTACACCGCGG
TCTACCTGCTAGCGCTGGCGCAGGGCTTCCACATGCCGTGTTCGGAAGCTCTGGGCGCGG
ACCAGTTCGATCCCAGCCTGAGTGCGTCCCGGAGCTCCTACTTCAACTGGTTTCACTTCT
CCATCTCGTGGGGCTACGCCATCGCGGCTATCGTGATCACCTACATCGAGGAGAATGTTG
GCTGGACGGTAGGGTTCGCCGTGTGCTGGGCCACCATGGTGGTGTACCTCGTCGTCTTCC
TACTCGGCTCGAGGACTTACCGTGTAGAGCAGCCCGTGGACAGCAGTTCCTTGGCGCAGC
TCACCAAGAAGCTCATATTTTCTCGAGCCGATGCTACTGACACACAACGGTGAGTGCAAG
TCGACGTAACAGAGAGATGGTGTCATAGTGAGTGACGGCGGATGTTTCTACTTGTGCAGG
CTTTTGGCGACGGGTCAGAACATGGACGACAACGGGTTCCTCGGTAAGTTGCTTCCTATC
TGGTTGTCAAGCATAGTGATCGCCGCGGCCACCTCCCAGGTCTCCACCCTGTTCACCAAG
CAGGGCAGCACGATGGACCGGCGCCTGGGCGCGGCCACGGGCCTCGTCGTGCCGCCCGCG
GCGCTGCAGTGCTTCGTCAGCTTCACCTACATCGCCCTGGTCCCCGTCTACGACCGCGCC
CTCGTGCCCCTTGCGAGGCGCCTCACCAGACACCCCGCGGGGGTCACCATGCTCCAGCGC
ATCGGCGCTGGGATGGTCATGTCCTGCGTCACCATGGTCGTCGCGGGGCTCGTGGAAGCC
AAGCGCCTCCGAGTGGCCACGGACGCCGGTCTGCTCGACCGGCCCGACGTGGCGGTGCCG
ATGAGCCTGTGGTGGCTGGTGCCGCAGTACGTCCTGGTTGGCTTCACGGAGGTGTTCTGC
TTCATCGGGCTGGAGGAGTTCTTCTACGACCAGGTGCCCGACGGGCTCCGCAGCGTGGGG
CTGGCCCTGTGCCTGAGCATCTTCGGCGTGGGGAGCTACGCCAGCGGCATGCTCGTGTGG
GCGGTCGACTGGGCCACGACGAGGGGCGGGGGAGAGAGCTGGTTCGCCGACAACCTCAAC
CGCGCGCACCTCGATTACTTCTACTGGATCCTGGCTGGTCTCAGCGCTTTGCAGGTGGCC
GTGTTCCTGTATTTTGCAAACCGGTATGTGTACCGGAAGAAACCCGAGCAATGATTCGTC
CTCCGTTCGAGCAACTCCGACAGGCGCCTTAAAAGAAAATTGCAGCGCGGAATTGTGCTC
TTTTTTTTTTAGCGCAGCGGCAGCGCTCCCGTTTCAGCCTGCCTCGCAAAATGAGGCGCC
CCGCTACAGGCAGACGCTGGGCCAAACATCACTGGTAGAAAACGGGCCTTTGGCCTGGAC