morexGenes - Barley RNA-seq Database

Contig contig_51038
Source Contig contig_51038
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_51038 (7052 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_51038

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_66040	2	3032 bp	MLOC_66040.1	Available	Available	LOC_Os06g40950.1, FRAME:+2, EVALUE:1e-59, 13106.m04269 protein DNA-directed RNA polymerase I subunit RPA1, putative, expressed
MLOC_66041	3	919 bp	AK251444.1	Available	Available	None
CDS Structure of MLOC_66040

CDS Structure of MLOC_66041

Contig Sequence (7052 bp)

>contig_51038 7052 assembly3_WGSMorex_rbca.fasta
TATACTCCCTCTGTACCGAAATATAAGACCTTTTAGAGATTTGACTATAGACTACATACG
GAGTAAAATGAGTGAACCTACACTCTAAAATATGACTACATACATCCGTATGTAGTATAT
AGTGGAATCTCTAAAAGGTCTTNNNTTTAGGAACGGAGGGAGTAATTCTTATGGATTATC
TACATAACTGTTTGGAAGATATTATATAGCGCTAGAAATATAATTCTAATGATGATCGTA
AATCATGTGTTATTTTACATGCGCTATCATTTAGAAATCATAGCCCATGATACACCCATA
ATCAAGAGAGCCCATCTCATGGATATAACCCCGCAACCTATGACTTTAGACCCTTCTCAT
CCGCAGCCCACTACCACATCCGTCAAGTAACAAGGTATACGGCAATTTATAAGTTTCTTT
GATCTGTAGAGATTTCATGTAATCTGGGCAGGCCACTTTTGCGAGCAGTAACTGGTTTAC
GGTCTCCTAGATGATTCCTATTTTTATCATAAATGTGGGATCACATATATTCATATATTT
CTCATGATACTAGTGATTTTACGAGTTATATCGTCATACTTCTGTATCATTTTCCTCTGG
TAAGATTGTATAATTATAAGATACTTCCATAATCCTAATAGCCAGCTTTCCATCTATGGT
ATTCATGGGATGGGCTACCTGTTTAGCTCATAAGAGCGGCCTTTCTGTTTGTACTCTATA
AATTGGAGTTGCTACCTTGTCTCATTCACTATTTTTATGTATTATGCAGATACAGTGAAA
TTGCAAATGGATGTCGAAACGGTTGTACGGAGAATAGGAGAATCCGCGAACGTCGCATTG
GATAAGAAGATTTTAAGTGTACTAAATGAGTTAACAACTAAAGTCAACAAAAACATGTTT
CCATATGGTCTACAAAAGCCCTTTCCTAGAAATTGTCTCACTCTTATGACTGCTACTGGA
GCAAAAGGCGGTGATGTAAGTTTCTTTTGATAGGGCAGAACAGTGCAATATTCTGTGTTG
GAACTAGAAATATATGAATTGTTCCATGCAGATACCTTGCTTTACCTACTTGCCCTAACA
TCTTGCCACTTCATTTGTCTTACTAGGTTAACATGACACAAATCTCGTCATTGTTAGGCT
CACAAGATTTAGAAGGAGCGCGTGTTCCACGAATGGTATCTGGGAAGTCATTACCATGCT
TTCCACCATGGGATACTAATACAAGAGCTGGTGGTTTCGTCAGTGACAGATTTTTAACTG
GTCTCCGCCCTCAAGAGTACTATTTCCATTGTATGGCTGGCAGAAATGGGTAAACTTTTC
TTTACTCCTTCTAATACATAAGATACTACCTCTTTGAGTATATTCCCTTGGTGGAAAAGA
AAATATTTCTCATATAACAGTGGTAGTTTCATACCCTCAATTGCCAATCTCACTTCACCA
TTATAATTAGATATATTATCTCCTTAGAGCCATCCATTATTACATCTGCAGTGGCTTTTG
TTGTTATGATATTTAGCTTGTGTTCGTTCCTCGCAGGTTGATTGACACAGCTGTCAAAAC
ATCTCGTAGTGGATATCTTCAGCGTTGTCTTATCAAAAGTCTTGAATCATTGTTTGTTTC
GTACGATCACACTGTACGTAATGTTGATGGATCAATCATACAGTTCTGCTATGGAGAAGA
TGGAGTTGATGTCCATAAAAGTAGTTTTCTCAATAACTTTAAAGAACTACGAGATGTAAG
ACATTCAAGTTCCCAGTTATAAAACTAGCCAAGTTAGGTTTCTACAGTACACCTTGCTCT
ATGCATTTGTTTGATTGGACTGATGTTTGCAATTTGTTCAAAATTACAGAATAGAACAGC
TGTGTTTGACAGACTTGGGAGGTACAATGATGAGCTTGAGATCTATAATCGTGATCCCCT
TCTATTAAAGCCCAAACACATTACTAAACTGCCTGAAGAACTCACTGGACGTGCAAAGGA
TTTTCTTAAAAAACAGTGCCCCTGCCTTAAAGAGCTTAAGTTTAAAAAGTGTCGCTGCCG
ATATCTCATAAAGGAGCAGGAACTAACAAAGTTACTGAAAGTCAAGTACATGGCTAGTCT
TGTCGATCCTGGTGAAGCTGTTGGTGTGATCCTTGCTCAGTCCTTAGGAGAACCTTCAAC
ACAGATGACGTAAGAACATTTCTGTACATCTGTTTGTATGAATTATTTTATGTCCACTAC
TTCTGTAGTTCTATATCGACTCCATTTCTTTATTTGTTTTGGGGTATATTCGTGTAAAAC
TTTTTTTTTCATGCCCTGCAGGCTCAACACTTTTCATCTTGCTGGAAGAGGTGACATGAA
TGTCACACTTGGGATGCCTCGGATACAAGAAATCCTAATGAAAGCATCAGCTAACATTAG
TACGCCTGTTATGGTGTGCCCTCTGCGTGAAGATATCAGCAGGTGAGTTTTTTTTGCTTT
ATTTTGAAGTTGCTTCATAATTTTAGTTTAATTTCTATGCATGATGTTATATCAAACTCT
CCTGTATAAGAAGTAAAAAAGAGTCCCAGTGAAACTGCACTCAGTTTTTTCACCATATCA
GCAAATACATGCACTAATGCCCACTTTTCCAGTATAAAGGTAAAAGAAAGTTTCATATGA
ACTAGCAAGATACTTGCCCTAACTCTTTCTACATGTGGACATTTAGGGATGAAGCTAAAC
GTCTGGAAACAAAATTAAGGGGCGTTAGGTTGGCTGATATCGTGGAGGCAATTGAAGTAT
GCACAATTCCTTTTCACAACAGTAATGGGCATATTTCGAGTCTCTACAAGTTACAGCTAA
AACTATTCTCACCAGAGTGTTACCCTCCTGAGTCGGAACTTACAGTTGATGAGTGCCAAA
CAGCCTTGAGAACTGTGTTTGTTGATGCAATGGAATATGCAATAGAAAAACACGTAAATT
TTCTACACAAAGTTAGTGGAATCCAGGAAACTAGGGTAAAGGACACTGAGAGCTCACAAT
CAGAAGGTCCTGAAGAATCCGAAAGCAGACCTATTGATGGTGAAGAATCTGGTGGGAGTG
ATGGTGATGATGAAAATAATGATGACTTGGGAGCTGATGCAGAAAAGAGGAAACGGCAAG
AGAATGATGAGATGGAATATGATGATGATATTGGAGAGGAAGATGGTATGAATAGTGACC
CTGAAGAGGAGACAAAATATGAACTTGATAACAACGATGATGCAGTTGAGTCTGGTGCAG
AATCAGAAGGGAATAGTGAAGAACATGTGTCAGATTCTGGTAACAAGACAGGGAAATTAG
AAGGTAGGCTTGCAGCTGGTAAACTCAAGAAGGACAAAAATGAAACAGTTGAAAACTTGG
AGGAGCAGAAGCAGGCACAGATAACCCAGAAACGCAGCAAGAAGTTAAAGCTGACTGTTC
ATGTTGAAAGCGCAGATTTAAAATTTGAGGTTCACTACATCTTGCACAAGGAACCACATA
TTTTACTATCCCAGGTACATCATCATACACAGAACACTATATTTTGGTTTCCTTTCAGAT
GGTAGTAACTGAATACGACAGAACTAAAAAATATTACCTCCGTCACAAATGAGTTGTCTT
AGATTTGTCTAGATACGGATGTCCGTATCTAGACACGTTTATCTAACACTAAAGCGTGTC
TAGATACATCCGTATCTAGACAAATCTAAGACAACATGCGTATCTAGACAAATCTAAGAC
AACTAATTCGGGCCGGAGGTAGTAGTAAATAGTTCCTCTCTGAACATGTGTTGACCTGAC
TGTACTGTGGATCTCCGGTGAACTTGTATCATGCCCACTGTATCCCTTTTGCCATTGAAA
TGCTTGGCCCCGTATGCACCTGTTGCTGCCACCATGTATGGATCTGAACTTTTCTCACGC
TATTCAGTTGTGTCATGGCAAACACCTGTTGCTGCCACCATGTAAATTTAGTCATACATT
GGAGTAATGGCATAGCAGTTATCTATTTATGTGTCTTAGATCTGGTACATAGATTTGATT
TGTAATAATGGAAACTGTAGGATTTCTAGGAGAACCGATATTGGCTAGGGTCATAGTTAC
GTTGTTTGGATTTAGAAGTTTATAGTAAACTCTGATCAGTATTTGAGAAGAAAAAAAGCC
TTACCCTGCTCTATGTATGGGTATGTGCAGCTCTGGATTTAACAATCCCACAACAGGGTG
TTTTTAAGCTCACTCTTTTGACCCCATACAAGCTTGGTTTGCATATACAAAAGAAAAACT
GATAGAAAATGCATTTTAATTTTGCCTTTCCAGATTGCCCAGAAGACATTGAAGTCCCTA
TTTGTCAGTGCATCCCATAACAAAAGCATCAGTGAATGCACAGTTGTTTGGCCGGAGGAG
AAATATGATTCCGCTAAAGAGAAGAAGAAAGGTGATTCCTCTCAAGGAGATGTACAAGGT
GGTTCCGCTCAAGAAGAAGAGAAGAAAGACGATTCCACCAAGAAGAAGAAGAAAGGTGAT
TCTACCACTAAAAAGAAGAAAGGTGATTCCTCTCAAGAAGAGAAGAAAGACGATCCGACT
AAAAAGAAGAAGGAAGAAAGACAACTGCAAACGTCAGGAGTGGACTTTGAGGTATTCTGG
GATCTGCAGGACTACCTGGACATCCATAAGCTTAAATCTAACGACATACACGCTATCCTG
AATACATACGGGGTGGAGGCTGCGAGGGCCACCATCATCAATGAGGTGAAGGCCGTATTC
GAGCCCTTTGGCATCAAGGTAGACCCGAGGCATCTGAGCCTGGCCGCGGATTTCATGACC
TCGGGAGGCTCCTACCGACCGATGAACAGCCTCGGGATGTCCCGGTTCTGCACGTCGCCG
TTTGGCAAGATGAGCTTCGAGCAGGCCACGAGGTTCATCATGGAGGCTGCCTACCACGGG
GAGGTGGACAACCTCACCGGCCCTTCGGCGACCGTGTCACTGGGGAAACCGGCCAAGACC
GGTACCGGTGCCTTTGGGCTGATGCAGAATATCACCCTGGAGGAGCGGGCGGTGATGTAA
GAGCGACCTACTCACCTTTGTTTGGCAGTTCCAGTCCAAGAATCGTGTCCAGTTACCACT
CTGTGTTCTGAAGGAACTAGGCATGTGAATAACAATTTTGTGCTTGCAATGTAATTCTTG
CTTGTTTTCATCTATCTACTAGTCATCATCATGAGTGGCTTAACTTTCTATCTATTTGGT
AGGATAGATGCATCTTGCATTGTCTTAATTTTGTTTCTACCTTTTGGTGATACTGAATTC
ATGGTTGAAGATCTCCTCTCTCAATAGTTCTATTGTCTTAGTGGTGTCATTGTCGGCTGC
TCCCTGTTTATTGATCTTACAACACATATTCTCAAGTGTCCTCTTTGTGAATCGAACAGA
ACACTTTGTGTTGACCCCAAAAAACTCTACACTTTTCCTAGGCTCACATTATTCTCTTGT
ACTCTACACTTTTCCTAGGCTCACATTATTCTCTTGTACTCCTTCCGTAAACTAATACAG
TATGTTATTCTCTTATATTAGTTTATGGAGGGAGTATGTTTTGTGTATACGTGATTCTCA
CATTATTCACATTTGTCGACAGCAAGAAACGTGTCTCCCAACAGTTCTTTGACAGTAAGT
CGTCCTGACCTGATTCTGGAGCCAGGTTCCCACAAGTAAAATTTGTAGAAATAACAAGGC
TCTTGTAGTGAGTCAAATGTTGAACCAGTTGGAATAGCTGGATTAACCACTTCATTATTA
TTCTCTGCATCATACATTCAAATTCCCCTTCATCTCTGGGCATGCAGTCAATACTCTGGT
GCATGTATATGTACAAAGTGGGGAGATGAGTTTTTGAAAATGTCAACTGTCAACACATTC
CTCCGATTATGCTGCTTGCACCCCTATCCCAGCAAGGTGCTTATTGACCAGCCAACCATA
CAACAATGACATATTTCGACCAAAGCCCTTCCGTGCATTGACAAGGAACATGATAGATGA
TTGACACGAGCTGGACACTTATTTCTTGTCTGGGATCTTCTCCAGGAGCTCCTCGAGGAC
TTGGAACAGATCGCCAACGATCCCGTAATCTGCGACCTGGGCAGCAGAAACAAAACCCAA
AGGGCAGGCTCAATAACAGCGGTCAATATTTGGGGTTCGATGCTCCAAGCTCAGTCTGTG
GGGAGCGGAGTTGAACCTGAAAGATTGGGGCGTCTGCGTCTTTGTTGACCGCCACGATGT
ACTTGGAATCTCTCATCCCCGCCAAGTGTTGTATCGCCCCTGAAACTCCGAAAGCAATGT
AGAGCTCAGGCGCAACAATCTTCCCGGTTTGCCCAACCTGAGAAGTCAGGGCATTGTGAT
CATACATCAGACCGTAACCAGCGCAAAGGGATTGTATACCGAGTACATAGCTAGGGACAA
TATCAGAACTAGCCACTCTAATAGATTTGAGGAGCTTACTTGAAGTTCATTCGGCACATA
TCCTGCATCGACGGCAGCTCTGGTCGCACCCACTACACAAGGAACAATAAATGTAAAACA
GGAATGGATTTCATACGAGGCCTGGCCTTCACAGGTTCGGTGTCAACTAGGTTCAATGGA
CAATGAGGTAAAAGCAGAAACCTGCTGCGCCAAGTTTTTCTGCCAGCTGCTCCAACAATT
TGAAATTCTCGGCGCTCTTCAAACCTCTGCCTCCAGTGACTACCACACGTGCATTTGCCA
GGTCTGGCCGTTCTGTGTCTTGGGATGTAAGATTCACCCATGAAGATTTCCTTGAGCTCG
CTGCAGATCGAATGAAAGAGTTTTACAAACATGCCGCATGATTTATAGATCCGTAAACTG
TTATTATCAGCATGTTTTTGTAACAATAAATACAACCTGCAGATGCACCCACAAACCAGT
GACATCAGCACCTACATACCCAAGCATGAGCGCCTGCTCAAGACTGAGCTATGGACCGTA
AACCATAATAAGTGCATGGAAATGGAAATCAAGTACCAACACTCAATCAGACCTTGAACT
TCTATTGCAGAAGTCAGAATATTGTCTTAACA