Contig Data
morexGenes
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Map Locations of contig_50996 (4996 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_50996

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_66003 1 867 bp None Available Available None
MLOC_66005 1 291 bp MLOC_66005.1 Available Available None
MLOC_66004 9 926 bp MLOC_66004.3 Available Available LOC_Os12g40115.1, FRAME:-2, EVALUE:4e-20, 13112.m08864 protein expressed protein





CDS Structure of MLOC_66003






CDS Structure of MLOC_66005






CDS Structure of MLOC_66004






Contig Sequence (4996 bp)

>contig_50996 4996 assembly3_WGSMorex_rbca.fasta
GGAACGGAGGGAGTATATCCTACTGATACTATGCATTATAGGTGTAGTATCATACACTGG
TTGTAATGGGTAGTATCATATNNTAGTATCATGCATATGATATTAGTCTATGATACCACA
TTCCTAATGCATAGTATCATATGTTAGTATCATAGTAGTTCATTTATTGCCATGCAAGAC
ATATAATAGCACATCATTTAATATGATATGGTATCATAATATGATACTCAACCCTCTCTT
TCTTTATTTAATTCTATACCACCTCATCAAAATTATCTAGTTGGCGTGCATGATACTACT
ATATGATACTCTCATTACAGGCACCAGCAAACTGAATCACTTGGGGAGCACATCACTAAC
AAACTCAATCTTTATAGCAAGTTAACAATTGGGAAACAAGCCACTACCGAACCGAATCTG
TAGATAACAACTTAGTCCGACTTATTATTTTTTACAGCAGTAATCTTACCTACTTTGGGT
GATTAACTTGCTAACAAAATAACATGATAAGTTGATTATAGGAGCCTGAGCCTCAGGTTG
GCTGGCTGGGTGCAGTTCGTCAGGGCTGGTGCCCGCCTACCCCCGCGAGACCATCAACGA
GCAATTTCGACATTACTAAGATTAAAGAAGTGGACATTTTAGAGATAGAAACATAGCATT
TCAGAAGACAGAAAGGATTGGAAACCAGACACACATATCTCAAGCATTGCTGCTGAACTG
GAAACTGAAGTGACAATGTAACCACAGTTGTTGCTCGTGGAAAGGAGAGACATTTAAATC
TAAGAAATCATTTAAAATGTGCCACCAAATCCTCTTAGCAGGCAACACAAAGATATCTCG
CTACAAAAGTAGGAAGCTAAATCCATGACATAAACCATGTCATATGACAGGAAGATTATT
TTCAGTCTAGGCTAGTAATTTGGAGAGAAGCTATTTTGTTGGAGACATTCTTCTAACTCG
AATGGTTAAAAGGGAGGCACCAGAATAGCTTTCCAAAAGACGAATCCAAGATTTGTATCC
TCTTTAAAAAGGATGGTGAATCAACATGGCAAATTCAAGTACCTGCAAAATGACAACACT
ACATGGTCAGCAAGCTTCAATAGTTTGCTCAAGTGCAATGGAAACTTCAAGGCATAATTT
GCAAGAAAGGTACCAGACCCGATAAAGAGCAATTATGGAAAATGTATGCTACTGCCTGCT
GCTATGGAATTCAAAGATTAAACATTATTTCAGTCTTAACATAATTCAATTCTAGACATT
TGTGGTAGAAAAAGGGTCAAACTGGATAATCCGCACACATCACATACACAGCATCCTTGG
TTACATAGTTCATTTCTTGTAAAGACTGGCAGTACCGTATGATCTGTAGTTTATCAATAA
TATGTGTTCGACGTGTCAAATTTGAATTCCTAAAATCTGCGACTATGAGAATTAACCACA
CAACTTTAATTGTTTTACCACCCATACATTAAGACCTCATCAAGCTTTCATTCAAATGAT
GATGATTAAAAAACAATATCGCCAAAAGAGTGCATGTTCAAAATCAGCACCTTAGCTATG
CTCTACCCTTGCCTCTCCCGCATCACCCATCTTTTCCATTACCTAACAAAGCCCAACCAT
ACATATCCTCAATCAATTGAAGTTTGAATATTGAAGTGCACAATGTAGCTATTCAAATTT
GTAAAAATTAACTAACAGTGAAGCATGTATGTTTTTAGCATTGGGAAGAGAGGGTGTAGT
AACAAAGGGTTAACCGGGAAGAGATAAATAAATGGGATAAAAGTGAGAAGACATTTTGAA
CATTGAGACACAGTGTAATACGCTCATACAAAGCCAACACTCAACAGTTACCTATGCTCT
TGCTTTTTTACTTTTTCAATGCTATTATTATCGTGGAAGTTTGTCAAAATTACTCGTCGC
AAAAGAAATACAACACTGGGAAGAGGAGGAGACCTACATCATTCTAGGAGATAAAGTCCC
CGTCATGCTGGCCAGCCTCCAACATCAACCATCGTCCCCATTCCCTATCAAATCCCAATT
TTAATCTCCTTATATCAGTTTTGATGATATTTGACTAAACTTAATTACAGAAGTAGGAAA
AAAAGCATGCATTGCATATAACCCCCTTTTATTAACTTCGATTTTCACCATTGCAACATT
ATCCCATTCTACACAAAATGCAGGAGTTTTTGTCCATGCTCTTTCGAGTATTGACCATTT
TATAATCCTACCAGAGTTTCAGTACCAATTAACTTAGGCTCGCTCAAAACACGCCTATCC
ATTTCCGGGCAGAAAACAAGTTCTGATCTACAACCCCAAGAGAAATGATCAAAATCAACA
TATTGCTAGGAAACTCACACAAAAACGAGAAAATTGGATATTTGCCATTTTTAATATGTG
GCTTCTTAAAATTGCCACTTTCAAGATTGGGTTTGCAAAATTGCCATTCAGGTCGTTGGC
TCCTTGATTACCATGCCATTTCTCTCTTTTATTGTTTACCCTTTTTCTTTTCTTAGTTTT
AGGCGCCGGCCAAGACCAAACTGCCCCTGAGGGTATGTATACATACAGATGTACTGAGTA
CCCGTATTTATTTATGCATCTGATATTCTGGTACAACAGAAGAGATTCTCGTCGTTCGTA
AGAGCACCTGCTCACGCAGCCCACCAAGTCGTCATCGTCGCTTAAACCACCCGGCCGCTT
GCATGGGATGACGAGAAGGAAGGGAGCGTCCCATCAGGACGAGAGGAGGCCCAGGGAAAT
CAGCATATAGCCGCCGAGGAGCTGTTATCCGCCAGGAGGAGTTCCTCTGTCTGCTGGCAC
ACTTCAGACCAAAGCATGGCTTCCGGATTCAATTTTATCGTTTCAGCTACCAGGGGAGCA
GGTTAGGGATCATGATTGTAGTTTGCACATACTCCATACGTCAAATAATGCAGAGCTTCG
TTGACAAGTTGTGCAGCGAGAGATCAATAGCTATAATTTTTGAACAAAGCAAGGTTTAGG
CTCAACATAATAATTTCCAGAATCCATGCACGCGGGTCAACCAGATCGACAGCACACGAC
GCCGAGAAGATGGGGGCACGCGATATGTAGGCGATCTGCTACGGCGTCGAGGAGATTGGT
GATGCAATACGCACGGTATTCTCGGCTGCCGATGCGCTCGTTCTAGTATCGATTGGAATT
TGGATAGTTGGTGTAAGCATCAGGGGTAGTTTAGTCCTTTCCAGTGCTTATAAATGGAAA
AGGAAAAACAAAATCAATAAAAGAAAGGAAGTGGCATGATAATCAAAGGGCCAGCGAGCT
GAGTGGCAATTTTGCGAATCCAATCTTGAAAGTGGCAATTTTGAGAAGCCACATATTAAA
AATGGCAAATATCCAATTTTCTCCACAAAAACTAACGCGGAAGTCTGACACTGGAAACAA
AATACGGAATTCACCATCTACCAAGATACATTAAAATCTTGAAAATGAGATCACGACACT
AACTTAGATTAGATTAGCGATCCTGACAAGCACGGCGGAAAAAGAGGGTACCCTGGGAGA
GCTCGCAGCAGGCCCGGGCGCTGGCCGACGGGTGCGCCGTCATCCGCCCTAGCACCACCG
CCGCCGTCAGCGGCGACCCCATCATGGCCGCCAGGGGCCTGCACACACACACACACACAC
ACACACACACACGCACACAACAACAACATGAAGACATCAGATCGCCATCTCAGCGCAGTG
TGAGTACCTAATTCTGCACGGGGTTGACTTACCGGGCGGCCCCGAGCGGGGAGGTGGAAT
GGGAGGGGGCGAAGGGGGAAGGGATGCGGCGGCGCGGGGCGGCGAAGGGGGGAGGGGCGC
GGAGGCCGCCGACCGCGGCGGAGGGTGCCGGGCGGCGGACCGCGGCAAGGACGGTGCGGG
ACGCAGCGCCGCGCCACGCCATGGCTAGGGTTCAGGCGGAGGAGCGGGTGGAAGCGGCGG
CGGTGGTGGTGATTGGAAGTGGACTTGGCGGCCGGTGGTTTTAGGTTTTAATAGAGGACG
GTGGTGGCTTCGGGAGAAAAAAAAAAGAAGGCGTAGCGGGCCGGGCGCTGATTTCTCGTT
ATCCTGTTCAGCCTTTACTACTTTCTGAGAGCGCGAGAGAGATGCTTATCCTGTTCGGCT
GTGTTGATATTTATTTTTTTTGCAAGATTGACTTTTTGTTGTTGTTTTTTTCTTTTAAGA
AATCTCTGTTCCTAATTGCTCAGTTGGTGAATAGTAGTATCCATGGTTTTTTAGTCCGAT
TTATTTTTGTCTCACCTCCCACCACCATCCCTTCACATTGGTTTTTCAACTTTCAATAAA
AACTTTCGTAATCTTTTTAAATTATCCTAACTAGCCATGTTAGAGATGGCATGAACCAAT
AATACGTTACCAAACAATAAAATCGAATTATGTTACAAACAATTTCGAATTCTAACTTTC
CCAACACATGGATCCTTTCTAAAAATCAAATCTTTATTATTAAATGACAATCAATGTGTT
AGAAAGTCATGATTCAAAATAGATTGCTACATAATCTCTACTCCTAATTCGGGAGTCCGT
ACATCATTTCGTTAGGACTTCCATCGATCCCCCCTCCCACCAAACCTCTCATCGGTATTT
TTTCCCGTAGATACAGGAGCCGGTGGAAAAAATACAGAAAAATTGTGTGCGGAAACCTAA
TCCTTCCCACGCTCGCACAGTTGCATGCCTACCCTTTCCCTCTCGCTTGCGACGTCGCCC
CCGCTCCCCACGAACGACATGGCGACCGCAACCTCCTAATTACTTTGCACGCATCACCGC
CTCTGATGCCGCCTAACCACAGTCTTCACTGGCGGCATGATGGTCGCGACCTTCACTCGA
GATCCGCCCGCTGTTGATCTTGTATCCCCGTTCCCACTGTGATCCGGCCTCCTGTTGGGG
AACATCGCATGGNAAACAAAAAAATTCCTACCCACACGCAATACCTAACATGTTGATGTT
CATCTACGAGAGGAGA