morexGenes - Barley RNA-seq Database

Contig contig_50935
Source Contig contig_50935
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_50935 (10434 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_50935

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_65955	2	856 bp	AK373034	Not available	Available	None
MLOC_65953	3	1945 bp	MLOC_65953.1	Available	Available	LOC_Os06g37410.1, FRAME:+3, EVALUE:2e-97, 13106.m03870 protein helix-loop-helix DNA-binding domain containing protein
MLOC_65954	1	282 bp	MLOC_65954.1	Available	Available	None
CDS Structure of MLOC_65955

CDS Structure of MLOC_65953

CDS Structure of MLOC_65954

Contig Sequence (10434 bp)

>contig_50935 10434 assembly3_WGSMorex_rbca.fasta
TTCTCTTTGTCTACATCATGTCATCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGGTCGATGGGTGGAGTAATAGGAATAGGTGCAGGTAGGAGT
TGTACTATTTGCTTATAGACGTGATGCCTNNNNNNNNNNNNNNNNNNCCATGAATATCGC
ATAACTATCGGCTTTTCTATCAATTTCCCAACAGTAATTTGTTTACCACTTTATGCTTGC
TTCCATGAGAGATGCCACTAGGGAACACTATGGCCCTCGGATTTATTCATTTATAAATTT
ACAAGCGGTACAATTTCCTCGCTTCCTTTAATTACTTGTTATTTACTTTTCACTTTGCAA
CTTTCAATTGCACGACTTACTTGCTTGCAAATAACAAGACAAGGGGATTGACAATCCTCT
TGNCCGCGTTGGGTGCAAGTGTTTGTTTTGTTTGTGTGGAGTTGCTGAAAACGGGGTTGG
GTTGTTACTCCTATTGGTTCAATAAACCTTTGTTCTTTGTTGAAGTAAATACTTATGTAT
ATTGTGTTGCATCACCCATTCCTCTTCACGGANAACCCAACACAGATCACAAGCATCAAA
GTGGTGGGGAGAAAACTGAATGCAAGATGGAATCTTAGGTTCTTTTGAAGTAAGTATAGG
AATAAATACACTCAAACACCCGCGTCACGCTCGCCTAGGCGACACGGGGGCGACTCCTGA
AACCCATAGAAACGCCCGCGTCACTCTCGCCTGGGCGAACACGGGTGACTCCCAAAACCG
ACCATCACATGCCTCTTCTCCTCCCCTCCCCATGCCATTGCCGAATGAAGCCGTCGACCA
TAGATTGCATGGCCGACGGTGGCGGTGGGACTCATTCTTGTGGCTCCCCAGGGCTATGGT
GGCGGTTCCTGTGGGATTCGGTGGTGCTCTATGTCCACGACAGCTACGGCCTCGAGGCAG
CCTGCGGTGGCGGGGCTCGGCGAGTGGTGGCGTGATGTGGCGGTGGGGCTTGGTTGTGCG
CCAGTTCGATTCTGCATCGATGTTGGTTGTGGCTCCCTTGCCTCTGTATGTGCGTGTTCC
AGTTCTGATCTGAAGACCACGAGGCTTAGAAGGGAGGTTGCACATGCTTGCACAATGAAG
GCGGTCCTAGGGTTCTTCTAGCGTCAAGACGGTGTTCTGCTTGATGTCCTCCCTCATTGA
TCTTGCGAGTTAAGGAAGGCTCCACCAGAGGTCTCCATTGGGTGCTTGGCGCCTGCAGAT
TGCCGGATCTGATGGAATTCGGTCATGAACGCCCTATTTTAGCTCGTGTAGCTTTAGGAG
AGTGTGATGCGAAGCTTCTTTATTTGTTAACATTATGGGACATGTCAGTATTTTGATTTA
CATGATGAAGGAAATGTTGGTGAACGTCATGGTGGTTGAGATATGATGCCTAGTAATAGC
GGATCGAGTCTTCGAGGTGATGAGGACTTTGCTTGGTGATTCATGACTTGTAGCAGCGAC
ATCGTCAAGAGGAGGCAGCAACACAAGAGGAGTACATTGTCTTCACTTTTAGGGTGAAAA
CCTAAGGTCTAACCTTAAAAATTGGTTGTGCCTCGTAGTGGCCTTGTTGAAGGCATTGTT
TTAAGAGTGCAGATTCTCTCCAGGGTGAAAACCTCATATAGATGATCGGGGGACGATTGT
GCTTGTGCATTGTTTTCTTCTTGGAGGCGCCGCTTTTGAATAATTTGAACTTTGGGTGTT
GTCTTCATGGTGGTTTGTGCTACACTTACTAGGAATTGATCACTGTAGCGGGTTCTTTTC
TTCTTCTTCTTCTTCTTCATTTTGTGTATGGGATGTGTGCATCCATGATGTCTATAGGAC
ATTTCGTTATTGCAAAGGTTGGGTGTAATTTGTATCTACGTGATATTACTATATTCCTTT
TTTTGAAAAAATGAAGAACCAATCACTTTTGACGTATTTTCCCCGAAAACATAAAGCTTT
GCTATGGCTAGGATGGCTAGGACTTCGAGGGGATCCGTCTTCTGGCGCCATTCTCTGACG
GCTTCCCCCCACCGGCGACTTGTCGATCATTGGTGGTGACTTAGACCGGGGACGCATGCA
TGAATTGTGTAGGTTTATGTTTTAGGGCCCTCGTGGCTTACTTTATAGCCGTTCAACATC
ATGAATTCAAAAAGGGAGATGATAAATCCGCATAATGAAGCTTTAGATCCTTCCTTTACA
TGGCGTTCTGCTCCTTAATGGACGATAGATTTGGTTACTAGTCTATTCGAGTAGGGATGG
TGTTGTGGCGACAGCATCCCTGTGGTGGACTTGTGTCCTCTGGCTTTGTTGCTGCAATGA
AGTTTGCTCTAGTATCTATGTAGAGCTAGGGAGGTAATGCAAGATAGGATGTAGATAATG
ATATGCATTGGAGGAAACTGGAAGACAATGGATCATGTGTTGAGTTCGTGATTTGCAGCT
GGCAAGTGTGGTTTCCTACTATGACATCGTCATCTAGCGGGCATGCAATAGTTGGAGTTT
GATGGTGTGTCGGGGAAGCTACTCTAGCCAGATTATTTAAACGACACTAGTTTCGTCTTT
GGTAAGATTCTTTGGAGGTCAGAAGAATTGCATATCAACGATGGAGCCGCGACGAGCTCG
AACAAAGAGGTGACCGTCACATTTTACTTCAGTGGTTGAAGCAGTAGTTCCATAGGTAGG
TGATGGGCGTTGGCGTCAGTCTTAGAATATTCTTTGGTCTTTATTATAATTTTTCTTCTT
GGTTTATGGTCCTTTGTGCAAAGACTAGGGTTTTGTTGTCTTTCTAGTTTTTTCATGTAG
ATGTTTAGGTGGCTTGTAACTTAAGACACGTATTGTCGTAAATAAAAGAACCAATCATTT
TTGAGGCCGTGGATCTCACATTATTTATCTTGGCCTCCACATCTTCGCCTCGGCAATGAC
TCTAAACATATCTTGCTTTGGAGTTTAAAAAATGAGCCTTAAAACACAAAGGCTTATGGA
CTGGTTTCTAACAACTTTCACCCGTTCCAATTCAAGTAACAAAAATGTGTCAAGCTTATT
ATGATAAAGTATTGTTAGAGTGTGAGTGAACTATGACTTAAGCTCCCAGCTAGAATAAAA
AGAGTCACATTTACAAGTATTGAAAGACAAGTTGCATTGAATTTTTAATGTGGTGTAAGT
GGCGGAGCCAGGAAAATTAGATGAGGGGCCACTTGTTGGCTCATCACATCACACCATTTT
AGCAACAGTTAATCAAATTTTTACATGCATATTAGCCTAAGTTCAGAGATGTTAGGGGGG
TTCAGGGCCCCTGCTGGCCCCCTGTTCCTGCCACTGTGTGGTGTTCACATATTTCACTTA
AGGATGACGGCGAGCATGCGGCTACCGATGCAAACATACATGTTGTGGGGGGTTCCTTGT
CGACATCAGGTAGGGTGGCATCTACTTCTATTCATAGAGTTGACAACGGGTAAACTACCC
TATGTACATGGTAGAAACACACATGAATCCTAATAAACACAGTCAAACCAAAGTAAAACA
ACATGAAAAGATATAACTAAAACGGTATTATGTCTCCAAAAACATTAGGCATGTACTTCA
TACATAGGAATTCTAAAAAGATATCTATGAACATTGTATACGACAATTGAGGCATTCTTC
TCACTCGGCCATTCTGGGACAATTGCTCCTTGATGAAGTTGAATATGTGTGTGATCGTAG
AAGATGGGCCTCACATGAGGCATTTTTCTCACTCGATCATTCTGGGTTGTTTGGTGGTTG
GGTCACAAAGTAATTATAGAATTATAGTAAAACCAAAAAAATTCATATCCACGTAAAGGC
AACTTTTTGAGTTTTTGTGTAAGAGAATCGTCTTCATTTTGTTTTGCAAAGATTTTCACA
TTTCCTCGCCATTTTCGTTTTCCCAAAATGCAGAAAGTAGTATTTGGACGCAACTCGGGA
AAAAGGAGTATTTTGACGTGAATGTGGTTAAGTCCTATTATCTCGATAAAGAATGGTATG
AATTGCCAGATTAGGCAAGGCGTGCTTACAACCGTAGGATAAATCCTCCCATCCCTATGC
CTTTGAAAGTTTGAACGAGTCCACGTGCCTGCCTTCGGTACTTTTCAAACGACCCCACAC
CTCTCACCAAACTCCCGGTTGCCACATCGACTCGATCCTCTCCAGCCTCCACAACCCACA
TACATACGCGCGCGCACCCGCCCCTCATGGCGGCGCCAGTCAGAGACAGAGTACAAAAAC
GGCCATGAACCTTGGAGCCAGCGGCCTCCTAAGGTGAGACCGTGAGAGGGACGCCCGCAC
GGTGCGGTCGCGGTGCCTATGGACTCCGTCTTCGCGCTCGCGGCGGTGCCCCGGGCTCTC
GTCCTGGAGCGCGCGGCGGCGCGCGTCCCCGGCTGCCTCTACCTCTGCCTCTGGGCGCCG
GTGACCGCCCAGCTCCCATCCAGGTCCGTTCGTCGCGCCGCGGCGCCGTTGGTCTTCTCG
AGTCTCTCTGTCCTTTGCTTGCTCTTCACGGCGTAGTTTGCTGTGGTGCTCCTCGCCAGC
CATTTGTTCTGCTTGGACGCGTGGATCGCCGGCGGCGGCGGCGGTGCTCGCGCACGGGCG
GGCTTCGAGGCGTACCGGGGGGCGCTCTGCGCCGTCGTAAGCGGGTACGCATTGCAGTGC
ACAGCTCGGTCCTCAGCTTCTTTGAGACCCGTATATTCTGTCTGACGGTGGCCGGTCGAG
CATGCAGGTGCGTGCCCGGGTGGGCGTACAGGGAGGGCCGCGCCTACATGGAGCTGCCGG
AGCCGGACCTGACGTCGTCGGCGTCGCTGCAGGTGCAGCAGCAGTTCTACCATGTCAGTC
AGCGCCCACGAATACTTCTCTTCGTCTTGCACACTATCGATTGCGATAGTCCGGTCTGTG
TTTGAACTTTGAAGCTGATGGCTGACCTTTGCTCGTTGCTCTTTGTTTGTTCGTGCAGGA
AGCCGGCACGAAGGTACGTACATGAACGGCGACGCCTCGTTGTTTTTTACTATCTTTTAC
GCATTGCGTCAACGGGGCATGGGTTGAGCTGATGATCGCGCGCGGCAGATGGCGGTGTTC
ATGGGATGCGAGAGCGGCGAGATCGAGATCGGTCTGTCGACTACATCGGTGGCAGCGGCG
GCCGTGGCGGATCACGTGCACCAGTCGTTCCTGGAGGACCTCCTCCAGCTGCCGCCGGCA
GGGCTGTCGTCCTCGTCCTCCCCCGTGCCGTCGCTCTCCATCGGGAGCCCGGAGTACTCC
TCTCTCATTCGCGCAATGGCGACGCCGGCAGCAACGGCGGGCGAGCCATCCACGCAGCCA
CTGCTGATGCATGCGTCGTCGCTGCCCGGCTTGCTCGCGCCGATCGTCGAAGCCAACGAC
TACGCCTTAATGGCGCAGGCAATGCTCGCGGCCATCCCCTCCCCCGGTGCGTCGACCACC
TCCACGCCGCCGCCTCCGCCGTGTCCTCCCTGGCTGGCCAGCCACCGCTCGCAGCGGTCA
TCGCCGCGGCGGACGACGGCGTTCAAACCGTATCGCGCGGCGCTCTCGCCAAGGGCGCGG
CCGCGGCCAGGCGCGCCGGGGCAGAGGATGATCAAGACATGCATGTCGCTCCTGGCAAGC
GTGCACATGTCAATGCGCAACCAGCCGGAGCTCGCCGGCGCGCACCACGAGCCACCGCCG
TCCAGCACCAGCCAGCTGCACCACGTGATCTCGGAGCGGCGCCGGCGCGAGCGGCTCAAC
GACAGCTTCCAGACCCTCAGAGCTCTGCTCCCTCCCGGGTCCAAGGTACGAACGACTCCA
AACCAAAGATCATCTCGCCATGGATGCAAGATTCACAGCAACATCTCATCGTGATCGTTC
ATTCCTTCTGCAGAAAGACAAGGCCAACGTCCTTGCGAGCACGACAGAGTACATGGCCAA
GCTGGTGTCCCAGGTGACCCAGCTCCGAGAGAGGAACCTGCAGCTCGAGGCGGAGCTCGG
CCTGAACCCAAGCGCAAGCGATATCAATAACCCCTCGGGGAAAACAGTGGAGGTCGAGGT
GACCACCGGGGCGTCGACGTCGACATCGACATCATCGACGACGCCGAGTCAGCAGCCGCG
GGAGGTGGGCGTGCGGGTGACGGTGCGGGCGGAGTGCGACATGTCGGACATGCTGGTCTC
GCTGCTCGCACGGCTGAAGGACGCCGGGGGTTTCATGGTGGTGGCCGCGGAGGCGAGGCA
ACAGAGCAGCGCGCTTGCACGGGCCAGCCTGACATTGCGGATGACGGTAACAGTTTTCCT
CCATCCCATTTATTTGCAAAACCATATGGTCGCATGTTTGCACTAGTGGGTTCAACGAAC
ATTCTACTCTGATTTCAAATCGGGAGGTTAATCGTACTCTCTCGCAAGTCGACAGATAAG
TCACACTTATCAAATAGGACATTTTGAATTTTGCATAGCCTTTGGTGAACAACTTCGATT
TTTTTTTTTACCATGTGCGTGGAATATAATTTAAAAATAAAATAAAAATCAAGACAAATA
AAGTGATGTGCAGTTTGTAGGTAACAAACTATTTTTGGGATGGAGTTATAATATAAACCA
TGTATTCTTAAAGGTGGGGTATAACAAGCCATGTGAAGTGACACTTCACGGCAGGCGGTT
TATGTTATAATCCACCAAATTTAATCTAACATTACAAAATTATATTGTTGGATTCCTATT
TGAAAGAAATCTAGGATGGTATAATTATTTGACGCATACTCCCTTCCTTCCGGTAAAAAG
GACTAATTCAACAATCTCTCCAATTAAGACCGATGATGAGTGGTGGAATGAATTTCATAG
TAGTTTGCAAAAGTATTCAATTTGTATGCTCGTTTTCCTCAAAAAAAAAATCATGTTTGT
TTGCTTATTAATTTAACTTAACTGCAATGCATGCATGTGTGGCCAAAGCAGGAATTTAAC
ATGTATCAGTGAGGTTGATAAAAATAGGACTCACAAATATTAAAAGCAGAAATTTTGAGA
TATGGTCTTCTTGTAGGTCTAGCATTATTGATGGTCTTCAGACCGGAAAGACAGGAGTAC
ACCACATTTTATTACTCAAAAACTTGGTCAAAGTTATATTTCAGAAAACACCCAGAGGAA
ATATTAGTCTCTATTTTCCGGTTTATAAGGCCCACGTGTATTCCTAGATCGACATTTCAA
CCTATGTAATACGGTTTGTATATCGGAAAACATAACATTTGAATTTTCTAATGGTATACT
TTTCTGACATTTAACTCGTATTATATTGGTGAAATTATGGATCTAGGAAAATGTGCGGCC
CTTATACAAACATTTGGTGTGGGGTTGACTTGCTTTCATGCGAGAGAGAGAGAGAGAGTG
AACATTAACATGATTCCCTTTCCCCCGCAAAAAAGAAAAAAGAAAAAAAAAGATTGACCT
CAGCCAGACCATTGTACTGAAGATCCGAAGAATCTAGACTAGCAAGCGACTACGCTGAGA
ACCGGACATGGGTCAAAGTGTCAAACTAGCATTAAGTTAATAATCAAGTTGTTTGAATTG
GTTTCAGCAGACACGACTCGCTTTTGACCAGTTAAGCAAAATACATATAGTTGAATATAC
CCCTACTTGAATTACACACGTTTCCAAGCTTTTAAGGTTCCATTGCCATGTGGCCACGAA
CATGACCAAGAAACTGGATGTGTGACCAAGTAAAGCAGCAGAGCCATCGTTCATCCTTCA
GGCAATCTCTTGTCAGCCAGATCACGCTTTTCAGTACTACAAGTAAAATACTTTTTCAAA
CTGCGCTACAAATATAACCACGGTCTCGTTTTAGCCATCCGCCATGCATTCCTGGTTCGG
TTTAAAAAATGCATGCTCGATGCGATCTCATCAAGAAAACATCTGCCGTAATTAGTTTCC
TGATGCGTCCTCCCGACGCTGACAACGACAAAGTACTATAGATACATAGCGATCGAGGAG
ACCTGGCATGACTGGAAAGTGTGTGATTTAAACTGGATGCAGACGCGGTCAGGGTACTTA
CTTTACTGACGAAGCTTAACTCACCGGAGGCTGACGAACCTTTCAAATGCTGCTGTAGGA
GGCTGGAGACGTCGTCGACGCGACACGGCTCGAGGAAGCTCTGACGAAGGTCGTCGAGGA
CGCGGTGATGAAGACGCCGCCGCCGCCGGTGGTGCCACCCCCGAGGTCGCCGTAGGTAGG
ATGCCAGCATTGACCGTGTCAGGGAGCCCGAGGAGGAGGCAGGAAAATGACTGTGTTTGG
TGGCAATGGCGCCGTATGTTTCTCGTTCGTTCTCTCGTCTTTTATCCATGTAGTGCTGTT
GAGCTTTGGTAGTTTTGGGTCAAGATTGAAGGCCCCTATTTATTTTAGTGTAACGTAGTC
TTCAGCTTGATGATACTAGTTTATTTCTGTTTTACGGGAGTCAGCTTTGATAATTTATTT
TTGTTTTGAGGGAATCAGCTTGATGATAGGTCTATTGATGGCCCAATGTTGCAGTTTTGA
CATGAAATGAATTGGTTTTTTGAATTTTCCTTTTTGCTTGGACAACGTCCTGCACAGTAT
ACGAGCGACGATAGGTCTAGGGCTATAGGCACTGAAGAATTTTACTGGAAAGGAATAGCC
TGGCGTCAAATTCAGGCCCTGGATGATGAAGCTCGGTGGTTCAGTGCCAACTACCAAGAT
GGTTTCCTGGCTGTGGCGGCTTCAACCATCCGTGCCTTTCCGCTGAGAGCTGTCATGATT
CTAAAAGGGAAGGAACCAAAGTTCCAAGTAGCAGGAATTACAAAACAGACATATAACTGT
AAACCATCCAACAAGCCGACGATGAAAGCCGTGTTGCCAGGAAAGACGGCACGACAAAAA
ACATCATGCTATACCTCTTCTTGGTAACCTTCAAGATGTATACAGGGCAAACTCTTTAAG
CAGTTCTGTGTTTATTGGCTTCCCAGGAGAAAACAGTAACTGAAACCTCTATAGTATAGT
TTGACGATGGGGATCCATGGGGATCTCCAGGTGCTGTCTCTCTTGTCATCACGGCGCTCT
CAGCTTCCCTATTGCGTGCTCTTCTTGGAAACAAAGGCCTTATGACAGTATGTACAAGGT
GACAAGAATTTCCCGTGATTCATACATACTAATATGATAGAACTGTAAACTATACATCCA
GTGGATGTGCCCTTCAGGTTGAACACTTGTGGGTGGCAGAGGCTCCTTTAGCCTGGCTGG
CTACCTAGCTGTATCAAGTCTTTCTGTGAGAGATTGGTAATCGAATCCGCGATTACACGT
GCGCTCGACTTCATGTAGCCTCCTGAGCAGGGGGTGGGGCACGTGTATGTCATTCACAGG
AGAGGAACAAAAAACACAAAATGCAGGAGAAGCCGCTCACCTGATGTCATCATGACAAGT
GGAATGTTCTGATCTTTTGCAAATTTGAACACCTTCTCATCTCTAATCACCACACCTTCA
GGGCTTATCTAGAATTTGGGGAGAAAGCATGCAGCAGCAATATAACGGTATAACACTGAT
TAGTGTAGGGAACAGAAGCAAAACAAAGGCAATAATATGCTGTTTATAAGTATTTATTGT
TTATTATACTTCTGTGCCCAATGATTTTCCAGTTTGCTGTTGTGGCATTATGGGCAGAAA
AATCTAGCTTAGGAAGAGAACTATTGAACTATACAAAAGTCATGTTGCAATTAGGCGTTC
ATGATTAAGTTCTGTAATCTTTAGGTTAATACCACTAGAAATATTGAGCAAGTTGCAGCT
ACATTCTCCACAGGGAGTTACTTATGGACCCGATCTTTGTCAAAATATTGAGTTGATTGA
TCAGAGAAGTACCTTCAAGTTACCCAATGGATCACCATCCAGGATGTCTGTCCCAGCATT
ATAAATAATAAGCTGGGGCTGGAATCTAGTTTGGGCGACCTGCAAACAACATGCCCCAAA
AGGAACTCTAAATAGTGTTTGGTAAAACTAATTATATTTAAATTGTGAACAACAAGAATG
AATGGTTACAAGGGAAGTGCCAACTGCTTTGAACTCATTATATATTATTTTCCCATTTCA
AACGTCCATTTCAGTTGAACATGTGCAAATAACTTCATTCAATACCATGGATGCTTTTAC
ATCACATTCTAAAGTAGTATATTAAAATTCACCTCTATGTCCAGTTTACATAAGTTTCAG
AACACAAATCATGTGATATACTTCCTCCGTTCCAAAATAATTGAAGTTCTAGGATTTTGC
AAAGTCAAACTTTTTTAGTTTAACCATGTCTATAGAAAAATACGCAAAGATCTATGATAT
CAAATATATATAATATGAAAATTTATTTTTTCGAGAAAACGCAGAGATGTGCGTTTCTTT
GTATTGAAAAGAGGGAAAGTCAGTCTCTGAGGAGACGATTACAGCAGGTTACAA