Map Locations of contig_50865 (9353 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_50865

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_65916 1 1031 bp MLOC_65916.1 Available Available LOC_Os09g30130.2, FRAME:+1, EVALUE:8e-20, 13109.m03001 protein CSLE6 - cellulose synthase-like family E, expressed
MLOC_65915 1 544 bp MLOC_65915.1 Available Available None
MLOC_65914 6 3098 bp AK364579 Available Available None





CDS Structure of MLOC_65916






CDS Structure of MLOC_65915






CDS Structure of MLOC_65914






Contig Sequence (9353 bp)

>contig_50865 9353 assembly3_WGSMorex_rbca.fasta
CCTTCAAGGACCGGCTCGCCGCCAGGTACGTACGACCACGAACCACGTCCGTCCGCCCGT
CCGTGTTACGACCGGCCGACGACCCACGAACGGCATGATCGATCGAGGGAGATGGATGGC
ACGCGGTTTTCTTCTTCTTTTCTTCTTTGATTTGAAGCAAGAGATAGTGTCATGCAGATG
CGCGCAGGCGTACGTACGTGTTTGCGTTTCCCTTGTTAACTACTGTACTACTACTACTAG
TCTGGTCCTTAATCCGTACGTAGCTGTGGTGATACGTCGTCGTCGGACCTACTCCTGTTG
ATGTGGCGACGAGGAGTACAGTACGTTTTTCATCACCGGGAGTGGGAGTAGAGCTTGTGT
AGCACGAGCACGAGAGGTCTGCTCGTCATGCCTTGTGTAACGGCTGCCGGGCAGGACAGC
TTTGCTTATTTATTACCGTACGTGCGAGGCAGCGGTCAGCCAGAACGGCAGTAATTAATG
GCGTCCAGCGCACGGGAAACTGCCTAGCTAGTCAGCACGTCAGCTGCAATGGATGCAGAA
CAGACGTGTGCTGTCGTGGCATGACAGCACTGCTGGACGCCGGTAGCTACACGACCACAC
GAGTGCTGCTGCCGCCGCCGCCTCCAGTGTAGCGCGGCGTACCGATTAGTTTTGCTGGCC
TCGTGCACCACGCGGTCCACGCCGAGGCGGACTTGCACGGCCGCGTACGTCAACGCCCAA
AAACGATCTTTGGTTAATGCATGGACTGTGTGCCAACGAGAAGGCGACATCTCATCAGTT
TCATGCACAACAAGATGGTATGAGTTTCTGTTTCTATTTTTTACTTTCCGACAACATTCC
TTAATTTCGACAAGATATATGGGAAATACAAGAGCAGTTGGTTAGGACTTCCGGGAAATA
GTGCTTCACAACACTGCAACGACTAATGTTTTAAGATTTCTAAGCCAGTTTTTTGGTAGG
CTTCTAGTGGTTTTCCACCTGGTGGATATTAAAAAGAGATTACTGCCATCTGATCACTAG
TGGACTCGGCTCAAACGACAAGCAGCTGTTCGATTATGTTGCCCCAAGAAAACAAACAAT
CTAAAGTAATAAGATGCGCAATTTGTCATAATTCGAATGGAACCAGGCCCATAATCTGCA
GTTTTGCACAGTACATGGAGGCTTGGACTTCACCGACTGACGTAGAAAGCCAGTGCGATT
TCGGGTTGGAAAAACGACTGAGACCGCCAAAGAAAAAAAGTTTGATTACGTGAGAATTAG
CAAAGGCGATAAAATATAGCTAATTACTAATGCCACAATATGACACGCTATAGCATATGA
TTATTTTGAAATCACGGGTTTATGTTCTTATTTGATCAATTAATTTTGTTAAGTCTCAGT
CGAACAAGACTTTGTTATGTATGAGTCGATACTATCTTCATGTGATCTTGCATAGAGATT
CACACAATTTTTTTTCCTTCTTCTTTTTACAAAAAAAAAAATAAAAAAAAAATGAAACTC
CATGGGCATTAGCACCCATGGTTTTATTAATATAGAAGAAGCATCCCTCATGAGAAACCA
GAAATTCGTCCCCGACGTGGATCAAACCCTGGTTGCTGNAGACGCCACTGCGTTCCCTTG
CCACTAGGCTACAGCCTAGTTCTCCTTCTTCTTTTTACATATTGTATCACTGAGGATTGG
TTAAATCGTTGTCGACTGAGACCTAGCTACACCTTGATCAATACACGGCAATAAACTTTA
AACATGCCAAAAGCATTGTTAGAGAGGCAAAGATTGCTTTTGACACTAGATTAATCTTGT
GAAAATGATGGAAGCTGACGGTGATGTCTGTTAAGCCTGATGTATACAAAAACTCCTAGT
AAACTAGAGCAGATGCGTTTAACAAGTCGGGGGTACGACTGAACGACGCATGCCACCCAC
CAGGTCGAAATCAGCGCGTAACACGCTGCACAATTTAAATTTCAGCACGGTTGGCTGATC
TGGCCCAAGCTCCGGGACTCATCAGCTGATAGGCACACGGTCCCATTATTTTTTCTAGGA
TTTAAAACCCAGTTAACCAGAGACCTGTTTTCAGATACTTCATCATTCAAACACATAGTA
CTGTATTTGTCATGCTCAGCATTAACACGGTTAACTTCTCATTTGCACAAGGCACGGAGA
AAGGCTACCTTGCGTGGACATCTTCGTATGCACCGCGGACCCCTATTCGGAGCCGCCGAG
CCTCGTCGTCTCCACCATCCTATCGCTCATGGCGTACAATTACCCACCGGAGAAGTTAAG
CGTGTACCTTTCTGACGACGGAGGCTCGATTCTCACTTTCTATGGCATGTGGGAGGCCTC
CTTGTTTGCGAAGCACTGGCTGCCATTCTGCAAGAGATATAACATTGAGCCAAGGTCGCC
GGCCGCTTACTTCTCGCAGTCCGATGGGCATCAGGAACTGTGCACCCCAAAAGAATGGAC
ATTGATCAAGGTAAGCAGATATTGCAAACACCTCCTTTTTTCAAACAAAAAAAACACGTG
CATCAAATGGCTATTGAACAGGGAATGAATTGTGCTGACACGCTGGCCATGACAAGATTA
TTATGTATATATAGTGCTCAACATTTGGTATGCAACTGATACTGTTTCATCTTTTGGGCA
GGACATGTTTGACGAAATGACCGAGCGAATAGACACGGCTGTCATGTCGGGCAAAGTTCC
CGAAGAAATCAAAGCAAGGCATAAAGGATTTCATGAATGGAACCAGGAAATCACCTCGAA
GAATCACCAGCCAATTGTTCAGGTAGCTTTCACGCCATCGAGAATGGAGCAAAGGTTTCC
ATGATTTTGGAGTAAATAAATGTCATGGTATTTGGGAGTTTGAAGTTCTAAACTTGTTTT
CTTTTGATAGATTCTGATAGATGGCAAGGACCAAAATGCAGTTGATAATGAAGGAAATGC
GCTACCAACACTTGTTTACATGGCGCGTGAGAAGAGGCCTCAGCACCACCATAACTTCAA
AGCTGGGGCCATGAATGCTCTGGTACTCACTAAACTTTTCCCCATGACACTAAGTAGACA
GTTTACTCTAAGCTTTCATAGTTCTTGGCGACATAATAATGAAGTGAATGTGTGCTTAAT
ATATGTTGGTACAGTCTGGAATCCTCAATAGGAAAATAGTCCCTGGGCTGATTGTCACTG
GATGTGTTCGCAACGAGATGTGTGCCAGAATCAATTAGAAAATGTTGATTGATGCCCCAT
TATTCCCTTACCAGATGTCTACAGTATAAAGCAACACAAAGCACAAGGACTACATGCCTC
TCGTCGCATTGCTCAAGTTAGGCGTGCTGGTTCTAGTATGCATTCATACGAGCAGCCCCT
GCAATCAAATCAATGTCTGCTGCACAACGCTGAAATCCAAGTTTCTAGCCGGTCTACTTT
TATATACACACAAATATAAATAGATGTTCTCTGCTCATCTTCTAGTAGTGACTCAAAAGA
CAGAGTAAAATCCAAAATAGTCACCATGTTCATGGATGCATACAAAGTTACAAACACAAT
TGCCAATGCATGAAGGCAAAGGTATATTTGGCATCACACATCGAATACTTTTTTTTTAGG
AAGACAGTAGGTTTCCTTACTGTTTTTTTTAAATTGTGGGTTTTTGCTTTACAAATGCTG
TAAAGAAGCTAGCTAATACCATACACCCAATGTAAGCACTCGGTGTGATGCACTGATTCC
AATATGTTCTTCTGCCTTCCGCAAAATAGAAGAGAGTGAGAGTAGCTTCACAACACACTA
ACTTAAGCTTAGCGGAGTGGAATCAATGTCTTTAAGTATCCTTCAATCCCGATGTATAGG
GTTTGCGTGTGCTTCTAGGCTAATGATTTGACTAATCAAATACCCTGTCATATGAACCAC
AGTGTTTAACCATGGTATGTGTTGCACAAATCTCTATGTATAATTGAACGGTACATGAAA
CGAGGGGATCTATCCCCCCAGGGTAGGAAATCCACACTCATCCTCAATAACATCATGGCC
AATTAGATGACAATTTTATTCCATGAAAGGTTGCAATGCTTTCGTCATAATGGACTTAAA
TAAAATGTGTCAATTTTCTACTGAAATGCAGATAAGGGTATCATCAGTGATAAGCAACAG
CCCTATCATCATGAATGTGGACTGTGATATGTACTCCAACAACAAAGATGCGGTCAGAGA
TGCGCTGTGCTTCTTCCTCGACGAAGAAACAGGTCACAAGATCGGATTTGTGCAGTACCC
TCAGAACTACAATAATCTGAGCAAGAACAATATATATGGGAACTCCCTCCATGTCATCAA
TGAGGTCAGCAGTGCCAAATTGTAACTTCAGTTACATTCTCATGTTCTCCATAGTCCACA
TATATTATATTATTGGCACTAACATGGCTACTTCAATCTAATAGGTTGAGATGGGTGGTA
TGGACAGTTTGGGCGGCCCTCTGTATATTGGCACCGGATGTTTCCACAGAAGGGAGATCC
TTTGCGGCAGGAAGTTCACCAAAGACTACCAGGAAGACTGGAATGCAGGAATCAAGGACA
AATTACAAGAGAGCATAGATGAGACTGAAGAGAAAGCAAAGTCTTTGGCAACCTGCACAT
ATGAACACGGCACGCAGTGGGGAGATGAGATTGGGGTAAAATACGGTTGCGCAGTGGAGG
ATGTGATCACCGGATTGGCAATACATTGCAGAGGATGGGAGTCGGTCTACAACAATCCTG
AAAAACCAGCGTTTATGGGTGTTGGTCCAACAACGCTTGCTCAGACGCTACTGCAGCACA
AGCGATGGAGCGAGGGTAATTTCTCGATTTTCCTTTCCAGGTACAACGTCTTCTTGTTTG
GGCATGGAAAAACCAAGCTACGGCATCAGATGGGCTACCATATCTATGGACTGTGGGCAC
CTAATTCACTCGCTACACTGTATTATGTTATCATCCCTTCACTGGCCCTCCTCAAAGGCA
CCCCCCTTTTCCCAGAGGTAAATGGTTCATACTACGGAAAAGCCTCACCTTGGTTGCATA
TAGGGGTATATGTTTTGTATTGAAAAACTGATGCAATATTCATGTGTCATTCAGATTACA
AGTCCATGGATCGCACCCTTCGTATATGTCTTCTGTGTGAAGAACATGTACAGCCTATAT
GAGGCGGTCTCATCTGGAGACACACTGAAAGGATGGTGGAATGGACAGAGGATGTGGCTG
GTTAAAAGAATGACCTCGTACCTCTTTGGAGTCCTTGACAATCTCCGGAAGTTGCTTGGA
CTGTCGAAGATGACATTTGTGGTTTCACCTAAGGTGAGCGATGAAGACGAGTCCAAGAGG
TATGACCAAGAGATTATGGGATTCGGGTCGTCGGAACCGGAATATGTGATCATCGCGACT
ATCGCGTTGCTCAACCTTGTTTGCCTGCTGGGAGGGCTAAGCAAAGTCATGAAAGGTGGA
TGGAATGTACACCTGGATGCACTTTTCCCCCAGCTCATTCTCTGTGGGATGGTGGTGATC
ACCAGTATCCCATTCTATGAAGCAATGTTCCTGAGGAAGGACAAAGGCAGAATACCATTC
CAAGTTACACTAGCTTCTATTGGCTTTGTGATGTTGGCCTTACTGGCTGCAATGGTTTAA
GGCCCAACAAGAAGCACAGTGTGTGATTAGGTACTCAAGTTGGTATGGTTTATGGTTCTC
TCGAAACACATGATCTGATAGTTTCATGTGCAACTGTATTCATATGTGGCTATCACCAGG
TTGGGCAGAGGCAATTTGCGTAAGCCCTTCGACTCAGGATTAACCATGGATCAAATTACC
CCTGTGAAAATTAAAATACCCAAACAGAAAATGTCAAGAAGGCCAATGCAATTCAGGACA
GATCTAACTTAATCTCCTCTAGCACTAGTAAAATCCCAGTGTGGGAGCAACTTGTGCAGA
ATCAGGGCTTTAGGTGGACACATGAATACATAGGATCCAATCGTCTGCACCATTGCATAA
TGAATGAGCTGTCCAGATTTAGCAAGGTGGACACATGGACATTTCGCTTAAACCCTCTAT
TTTATCCACAATGCTGCACCTAACTCCTTCTCATCCCACCTGTGCCCGCCTCAAATTATG
ATCCCCTTTCAACCACCTCTCCATCTCTTGTATCCTGTCATTTCTTAGATCTTGCCAACG
AGAGCGCTAACGAAGAAGAAACTCTTCACAATAATTAAGCAAAGTTGTGCCAATGAAAAT
AGTTTCACAATACACTTTTTTCTATATTTTCTTACCAACATATTTGTGTGAATATTAACT
ATGAAAGTAACTTGTTGAAGATTGTGCAGTGCCCAAAATCACCAAATCTATGTGAATCGA
AATAGTAGAGATTTCTTCACGAAACATTTTACTGTGGAGCAACTTGTATAGGATCAGACC
ATTAGGTAGATACATAGGATCTAGACATTTGGACCATTGGACAACGATCCTAATGCAGAG
ACAAAGGAAGGTGGCACTGGGTTGTACATATCACATTCGAATCAATGAGTGTTCTCACTG
TGGCTTTTAGATCTTTCTCTCACTTAGTTTTGTTGAATGAGTGTAAGGTGCCTGTTGTAT
ATTGCACTCTATGACCAATTTGACGTGTCCAAAGCTGTCTCCATAATTTCCCCCGTCCAG
AACATTTCAAACACGAATTACACATGAAATTAACCCTAGTGTGATATACAATATATTACA
TGCATATTACTCCCTCCGTTCTTAAATATAAGTCTTTTTAAGGTTTCACTAACGGACTGC
ATACGGATGTATATAGACACATTTTAGAGCGTAGATTCACTCATTTTGCTCCGTATGTAG
TCTCTAGTGAAATCTCTAAAAAGACTTTTATATTTAGGAACGGAGGGTGTACATAAGATT
TAACAAGTTCCATCCAAAATACTCAGAATTTAACTTAACATGACTAAACTAAAACTAGGC
TAAGTAGCGCACGACCACCTCGTATGCATGGCCTCCAAGCCCACCGGCACCGCGGTATTC
GCCGCCATCTGAGTCGTCATAGTCCCGCCAATGGAGGTTACAACCCCAACCATCACGGCA
TCCGTCCACGGCCAGGGCATCGCGCTCACGGCGCACACGCTCGGCCGCCTCTTCCACCTT
GGTTCACTTCCTGTTGGCTCGGAGGCAGATCGAGCACTCGGTCTCGGCCAGCCCAACACG
GAGGAGCTGCTCGTTAAGACAACGCCAACAGAGACAAACCATCTTATTGGTGGTCTTGCA
CCGGTCGGAGCCCCAAGCCTCCACGACGACCTAGGGCGGCGACACGTCGGTCTTGGCAAA
CACCGCCAAGCGCTGCAACCGGTGCCGCTCTGGCACGCCTCCGCCTTGGTGAGGCATCTC
ACCACCCCCCGACAACGAGGATGATGCGCACGCAAGTCACCATTGCTCAGATAGTAGTTG
AGGCGGCTGAGCAGCTTCAGCTGGGATGACTCTTGCTTCACTAAGGTCGGGCACCATTTG
GCATCCGGGTGGAAGGGACGACTGCATGTGGGGTCCGATCTGGACATCGCGGTTGCATAG
AGGGGATGACTGCGCCAGACCCTAGTTGATCATCGAGTTTCGCAGTGCGATCTGCATATT
CTAATGGAACTCGCCATACATCGCCGTTGTGGCGGCTCCTTCGCCGAGTCCTCGTCGCAA
GCTAGGCCTAGTCGATCTCCGCCCCGTCAACCCGATTCTCCTTCACAACGGACGAAGATG
GACATGGCGACAAGGGGCATCGCCACATATTGGATCCGGAGCTCTCCTTGGATCCGGAGT
CCTGGCATGGCGGAGGCTGCATTAGCCGCCGAGCAGCCACCATGCTCGGGTGCGCTCCTT
CTCCTCGGACATCTTATTACCCATCATGGTGGCCATTGAAGGTGCGACATATTTGGGAGA
AGGGGAGGACTGGCTGAGGATAGGGTTTGGGAGGGGAGGTTCACCGACTTTAAAGCTACT
TTATTACTTTATTACTGGCTGAGGATAGGGTTTGGGAGGAGAGGAGGATCACCGATTCAA
CGGGTTAACCGGTCATGCAGGTCCGTACTCAGACGGCAAGAACATTGACGTCTCCCATGC
AAACCAGACGTTACAGACGTTGGCATCATTAAAAAAAAATCAGATTTGATTTTTTTCAAA
TAAGATCAATTTCAAAATTTGTTAAGCCAAAAGGTTATAAAAAAAAATGTCCGTGTCACC
GTGTAGGGGAGTGTGCGTGGGGTGGGTGGTTGGGCGGGCACTCGAGTCCACCAAACCATT
GGAGCGTGAGGTGGGTGAGGTCCACGCCTCCACCTGGTCGGCTGCACGCAACAGCTACAG
GAGTTCCAGATCCTCCCGAGCAGGCCCCTCACTACATGCGTGTGCTCCTGCCCATCATCA
TCTACAGGAGTCCCGAGGCAGACACAACACCAGGCCGAGAGAGCGACAGCGCGAGCGTGG
GAGATGGAGAGGACTAGTCGTCTTCGTCTGTTCGAGACGGAGACGCGCGGTGGGCGTGCG
GCGTACAGGCTCCACGCCGTCACGGTGGCCGCGGGGATCCTCCTGCTGATCTACTACCGG
GCGACGCGCGTGCCGGCCGCCGGCGAGGGCAGGGCGGCGTGGCTGGGCATGCTGGCGGCC
GAGCTCTGGTACGCCGCCTACTGGGCCGTCACGCAGTCCGTCCGCTGGAGCCCCCTCCGC
CGCCGCCCCTTCAGGGACAGGCTCGCCGCCAGGTCAGTACGCACGACGTCATCCCCCGGT
GGCTGTATGCTCCGGCTGTGTCGTGACAAAAAAAATGGGTTGTTTCCCAAAATTTCAGAT
TTTATATGCGTATATATTTGACATAGACAGACTGTTAAAAGCCAAACTAGTCCTGCGATG
GTGATGGAGCTGACAGTGACGCCTATTTGTTTTTTTTTTGGGGGGGGTTTTAGGACAAGT
AACGCCTGCTGTATTTGTTAGTCTACTGTGAGTTTGTGACCATAGCACCCACCAGGCCAA
TAATGTAAACAGTGAACATGCTTTTTTTAGCAAAAACGATGAACGTGCCGCGTATTTCAG
TACTACTAAAGTTGGCTGATTTTTTTCTAGCTCCTGGACTCAGTTAGGTACACACGAGCC
AACTGTAACAACTCACAATAACGAATCACATATATTCAAGAAAAAAAATGTACCAGGTTC
AACAAAACACAACGGACAGTTTCTAAGGGTGTTTTGCATAGGTATTCTAATTCTCGTAAT
TTAGTATTCCCTCTGTTCCTAAATATAAGACTTTTTAGAGATTGTACTATAAACTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTGTACATTCACTCATTTTGCTCCGTAT