morexGenes - Barley RNA-seq Database

Contig contig_50861
Source Contig contig_50861
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_50861 (10228 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_50861

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_65910	2	1567 bp	MLOC_65910.1	Available	Available	LOC_Os07g10780.1, FRAME:-2, EVALUE:4e-56, 13107.m01104 protein remorin, putative, expressed
MLOC_65909	3	1921 bp	MLOC_65909.1	Available	Available	LOC_Os11g36450.1, FRAME:+3, EVALUE:0.0, 13111.m03571 protein OsFBO15 - F-box and other domain containing protein, expressed
CDS Structure of MLOC_65910

CDS Structure of MLOC_65909

Contig Sequence (10228 bp)

>contig_50861 10228 assembly3_WGSMorex_rbca.fasta
CCATGCCAACCCAACATACACCGTCAGAGATACCTGTAGAGTGCCTTTATGATCACCCAG
CTACGAAGTGACGTATGATACACACAAGGCATTCCTCCAGTGCCAGGTAGTTGCATGATC
TCATGGTCTTAGAAACACATACTTAACATGAAGAGAGAAGTAGCAACAAACTAAGTGATA
CGGTCAAATGCTATGCTTACGGTTGGGTCTTGGCCATCACATCATTCTCCTCATGATGTG
ATCACGTTATTAAATGACAACTCATGTCTATGGTAAGGAAACCTTAATCATCTTTGATTA
ACGAGCTAGTCTAGCAGAGGTTCGCTAGGGACACGGTGTTGTTTATATATNNNNNNNNNN
NNTTAAGTTTTTGGTCAATACAATTCTAGCATGGATNATAAATGTTTATCATGAACAGGG
AAATATGATAATAACCTATTTATTATTGCCTCTAGGGCATATTTCCAACACAAATGTGGG
ATGCAATAGTTTCCTCTCTAGGAAGCATTATAAGTTCATAAACACATATATTTCATCATC
TTGGATTTTTTTTAATGGATTGAAATAATTTCATAATGATAACGGATGATGGCTTGAATG
ACAAAATGTGGTGAATCTTAATTTCACAACCTTAAAGACCAACAATTTTTTGCTTCATGA
AAATGTGTTCCTTTCAATCTTCTTAAAAAAAAAGCAATCATGAGTTTTTGCCACTCTTCT
TCGTGGTTGTTGGACGAAATGTTCAAGGAATGCTATACTCATTCCACATTAGAGAAAATA
TCAACATGATCTGCCGTCACATCAGTAAGAACCGGATAGAGAGGGATATAAATCAATTGA
TTTCTGCTATGCTTAAACCTTTAAGTAGGATATGATGTTCTAGGATTATAAGGGAATCCA
CAAAGGTAGTGTCTGTCATTGACTCTCTAGTTCACGTCATCTAGAATCACTAATAAAATT
TGTGTCGTAAATTGTCTCTTTAAGATGGCATACAAATATAGTGAAGTTGACTCTTAATGA
AGAGTATGTTTTATTCTCCACATTAGTAAATATCTTAGATAACAAGACTAAGAGTTAGCC
TTTAAGATGCCCTTAGCAAGAAAAGAGGAGGAATCGATGGAGGATTGCATAGTATAAAAG
TTTGGCAAAGACATACCAACCATCACGGGGACATATGCTCTAGTTTAGGGCCTCTTTCAT
TTGCATGATTTCCAAAACGCAGGAATAGAGAGGCATACTATCTTCGGCACTAAAAAGAAT
TGTGAGGGTGTTTGATTCTCCGTAGAGAAAACGATGGATTCTTCCAAAGAAGTTGAAGTG
GATGAGAAATTTTCAATGAAATCCAGTGTAAATGAATGTAAGGACAAAAAAATCTTATGG
GTTTCAATCCTACGAATCGAACAACCCATATGAGAAAATTTTCTAAGGATTAGAATCCTC
CCAAATTCCTTTGCAAATTCTTTGAATCAAAGAAGCCTTTAATACTCCCTCTATTTTTGT
TTAGAGGTTTCACAATTAATTTTACCAATAAAATATGAGCTACATATCCCAAAAGAACAT
GACCATGCATGCACAATTCAAAAAACTCTCCGATGATACGTACACTCAAATATTTTGATC
AAAATTACGAGCCAAAGTTTGACATGAAAAATAAAGCGACTTGTACAAAAAAACGGAGCG
AGTAGTTTAAACATAAAGTTGCAAAAATAGTGACCATGACATGGTGTCGAAAACCAGCAT
TTTCCCACGAACTGACTCGATCAGAGACGTCCGTTCATGACCGAGCTGTGACCCTAGCCG
TGCGATTTCCCATCTTCTGCTTCACAAAAGGGCACTTCTCCAAAACCTTAACCCCCGACC
ACTCTTCTACCTTTCCTCCTCCCCCGCCGCCGCCGCTGCCGCCCGTACGAGCGAGCATGC
CCAGCGCTTTCCACTCCCTCCGCCCATCTCTCATCAAGCGGAAGCACAAGCGCAAATCCA
CGCGCCGCGGCGGGAAGCGCCCCAAGAAGACCAGTGAATCGACGAACCTCGCCGCCGGAG
GCGGAGACGCCTCCTTTGACCTGAAGAGCTCCGCTTCCGCGTCGACCGCGTCTGGGTGCG
GCGTAGGAGGCAGCCTCGTCCAGCCGCTAGGGAACCTCCTCCTCGCCGCCGCCGGGCGCG
CCAACCTCCGGGACGCGGGCCTCGGCGGGCTTCGCCAGCTCCCCGACGACCTCCTCCTCG
ACGTCCTCGGCCTCCTGCCTGCCCGCGACCTCGCCGCGCTCTCGGCTGCCTCGAAGGCCC
TCTACGTCATCTCCTCCCACGACCCGCTCTGGCGGGCCATCGTCCTCGACGAGCTCGGCG
GCGACTTCGCGTTCGCCGGTTCGTGGCGCGCCACCTACATCGCCGCCGTGTCTGGCGGCG
CCCATCGCCCTCCGCGCGCCCTTGAGATCAGTGGCTTCTACTCTGACTACCTCTTCCAGA
GCTGGCTATGTGCCAACATGGAGATGCGGGCCGAGTGGCTGGAGCGGGACACCATTGACC
GCCGCCGCGGCTTATCTGTGGAGAGATTCATCGCAGAGCACGAGGAGCCGAACTGGCCGG
TGCTGCTTGAGGGGTGCCTTGAGTCCTGGCCGGCGTTGCAGAAATGGACGAGGGAGTATC
TGCTCGAAGTCTCAGCTGGCAAGGAGTTTGCCGTCGGTCCGGTGAGCATGCCATTGGATA
GGTACTTCCTGTACTCCGACAACGCGGAGGAGGAGAGGCCATTGTACCTATTTGACTCCA
AATTTGCCGACAAGGTTCCGGAGATGGGGAGTGACTATGAGGTGCCGGTGTACTTCCAGG
AGGACCTGTTCAAGGTGCTTGGAGAAGAGAGGCCGGATTATAGGTGGGTTATCATTGGTC
CAGCTGGATCAGGGTCATCGTTCCATGTTGATCCTAACTCGACGTCGGCGTGGAATGCTG
TGATCAAGGGGGCTAAGAAGTGGGTGATGTTCCCACCGGAGGTGCCGCCACCAGGCGTCC
ACCCAAGTTCGGATGGGGCAGAGGTCACTAGTCCTGTTTCTATCATGGAGTGGTTCATGA
ACTTCTACGGAGCCTGTAGGACCTGGGAGAAGAGGCCAATTGAGTGTGTATGTCGGGCTG
GGGAGATTGTATTTGTGCCTAATGGATGGTGGCATTTGGTTATCAATCTTGAGGAGTCCA
TTGCCATCACTCAGAACTATGTGAGCAGGTTAGCTTTCAGATTGCATACAGTTTCTCTGC
TTTTTCACTTCATATTTGTTATCCTGTTATGCTTACTAAAATACTAAGCAACCATCAGGA
AGCACAAATGCACGAGCTTCTGCAATATGTATCCTTCATCTAGAGAGAACGGTTGTACAA
TTTTGTACCTTTTGTATGAACACATTTACAAAACTATTATCTCCATGCCACTCGAACAAA
TTAAGTGTACACAGACAGAATCGCAAGAAATCCTAATATCAAAACATATTCAATTGGAAA
AACCAAGATTTTATGTTTTTAACTCTAGATTTGTTGCTTAAAAAAACTACTCCCTCGATC
CATATTAATTGTTGCAGCTCTAGTACAACTTTGTAGAGTACTAAAGTTGTACTAAAGCTG
CGACAATTAATATGGATCGGAGGGAGTACTACATTTTTGTTGACAGAAATCTGGGTTTGG
CCGTGTATTCTTCAATTTAGTTCTATTCATATCACTTCAGCATTGTCAGATACAAGTTTT
GTTGGCATTGTGTCAGTTACGAATTATGATCAAGTTAAGAAAAATACTCATCTTCCAAAA
GAGTTTCTCTTTGGTTTAAGAACCTTGTTTCCTAGTTTATACATGAAACCTTCTTCTTCC
GAATCATATAATTTTGATAAAGATTTAGCCTTTAAACAAGGAAGATTAAGCCCGACTCTT
GGCTTTAGCTCAGTATCCCTGTTTCAGGGGCAGCTACATGGTTGAATAGACATGCCAAAT
TGTTTAACTGGATGATTTCAGCAGAGAGTAACTTATTTTTGTGAGGTAACATGTTTTTTC
ATGAAAAATATATAGCTTAATAAAACGGTTTCTCTTTCTTTCCTTGTGAAATGTCCAGGA
GGAACCTGTTGAATGTTCTTGACTTTCTCAAGAGGCCCAATGCAAGTGAACTTGTGTCAG
GGACCAAGGACAGGGTGAACCTGCACGACAAGTTCCGGAACGCCATCGACACAGCTTACC
CCGGGACGATTAGTCAGCTTGAAGTTGAAGCTCAGCAGAAGGCTGCTGCACGGAAGAAGA
AAGTCGCATTCTGGGATTCTGCTGTCGACGCTAACACTGGAGGATTCAAATTCTCCTTCT
GATTTTCTTGCAGCAGCTAGGTCTGTGGACTTAACATTTGATCTTATCCTGTTTACATGA
GCAATCATGTTTGATTTGCTTTGAGAACCTGGGTTCATGGGCCTTTGCACTGATCTGTCT
GCACTGAAGCAGATTATTTTGATTGTACAAGGCTATGAGCGTCCTAAAACTTGGAAGAAC
ATAATCTCAAGACCGTTGCTCCCCATTGTTGTTGTAAGGTTAGACCATATATCACATCAT
GAAAAATTGATCTTTGATCTTCAAATACTTGGGCTGAAAATTGTTTGCATTTTGGTGCTA
TCTCTAAAAATTGTTTGCATTTTGGTGCTATCTCTAAAAATTGTTTGCATTATGTTATTC
ATCCGGTGTCGTTGGTGGTAAATTTGGGTTTTATCGATACCTTGATTTTTTTTAACTGAG
TGGAAAGATGCCCATCTGCTATGAATTCTTGCACAATCTTCGCCTGATTTTTTTACATAT
TATCCTTTAAAGTCTGGGAAGGTCTTGAAGGTTTACGAAACCACATACATAAATACATGC
AATGTTACCTTCTAAAAAAACATTTCTATGTTAACCTATTTTCTAAAAACTATTTATAAA
GTGTTAGTAAATTTGTATGAACATCAAACCCAGTAGAGAATACTTGGAATCAATTTATTT
TAACTAGTCTACAAAAATGCCTTATATGTTGAGAGGGAAATAGTATTTCCATGGGGTTCT
TTTTTTTTTCAATTAAGGCTCTGTTCGGTATCGCTCCGCTCCACAACTCCATGAGCGGAG
TTCACGGAGCTGCTGTATAAAATGGCGGAGCTGCTGTTTCCCCACTCCGGAGTGGATGAT
TACCGAACAAGGCCTAAGATATTAGCAGAATGGCTGTAAATCAGTTCATTATCTTCCTAT
TATTTTTTTAGTTTCTATTTTTCGTATTTTGGGCTTGAATATTACTTCTTTGGTTTCTAA
ATATAAGTTAGTTTTTCTTAAGATTCCACTATGGACTAGGTAGAAGCAAAATAATGAATC
TACACTCTAATATATGTCTATATATATCACTATGTAGTTTGTAATACAATCTTTATCAGG
ACTTAAATTTGAGTAGGGCGTTTTGGTGACCAAGCTCCATGGAGCCCTTTTTATTCTTGA
AAAATTCAAAATTCAAACTTTTTGACTTTAAAATATTATGAAAAAATATGCAACTATACA
AGGATGAAATGTATATGTGTGTAAAAATCCAGGATGAAATATCTTTAAATGCGACCTGTA
TAGAAAAGACAAATATCTGAACTTTGAGGATGAATAGTATCATGTGTTAAAAAGGCTTAG
ATTTATCTTTTTCGCACAATCCTCATTTCAACGTATTTCGTCCTAAAAATTTACACACAT
GTGTTATGCCTTCATGTATAACTATATATATTCTAGATTATTTAAAATTGTAAAAATATG
GATTTTGAGTTTTTTTTAAAAACCTGTTTTCATGAAGGCCGGGCTTCAAAAAACATTTTC
GTTTACATTTAGAATCGGGGGAAATAATTATTTGCGAGAAGGGCTTGAATATCCATTGCA
CGGTATCACGCAGTGGGATCCAGCTCATCTGTCTGATACTCCCTTCGTTCCTAAATATAA
GACATTTTAGAGATTGCATTATAAACTACATACGAATGTATATAGACATATTTTAAAGTA
TATATTCACTCATTTTTCTCCGTATGTAGTCTCTTGGTAGAATCTCTAAAAGGTCTTATA
TTTTAAAACGGAGGGAGTATATGCTTCGGGAATGGTCATATCACCAGGTCACTTTCACGC
TTTAGAGCCATCTACAACAGGCGTCCAAAAACTGCTTCGCGCGCTAAAAGATTCGTTTTT
TTAAGCGCCAAACTGCTCCAGCAGAAGCTGCAAAACGCTGCGCGCGTTAAAAACTTCTGG
GCGCGCGTTTAAAAACGTTATCGCGCACAGCATATTTGGTGCGCCGGCTTGCGCGCGCAC
CAAACTCTGAGCGGTTGCAGATGGGACCGCTGGATCGGACTGGATTGGGCGCCGCACTAG
CGCGCGTCTGTTGGAGATGCTCCGGTCCCCGCGCTTCAAAACTACTACAGTGACACGTTA
AAAAATTTATTGGACGCGGATTTTTTACGCAGCGGTTGGAGATGCTCTTAGTTAAATCGC
TCTCGCATCGCATATGAGCTTTCATCCAGACCCGAAGATATTCCACCAAGGCCATGGAAA
TTTGGCTTTGCCATTAGGAGAAGGGCAGGTGGCCTGCAGGTCAGGTCAGATCTCTCACGA
AGTTGACTCAGCACTTCCAGTCAGTCACACGCAAAGTAAGGGCCTCGATCGAATATTTCA
CAAGAAATTATTTACGCCAGTTTAGAAAAACAATTTAGAATAGATATGAGATTAGAACAA
CTCCAACCGGTCGATCCAAATGAATAATTTTATCTGCTTTTTGTTCGTTTGGGTCATCTG
TCGGCTCTCTGTTCCTCCAGTTTAAGATTTGGGTCAGCAGCGCGCCCAACGCGCAGATTC
ATATTTGTCCGCGTAGCCGGCTAACCACCGATTTTTAACAAATACAAACATTTTGCATAT
TTTTTAAAAGCAAATGAAATAGTATAGTTTTATAACCGAAAATAAAATATAGCAAAGTTT
TACAAGCTTAATAAAAATTAAATTATCTAAAAGATACACCTATTGATTGCCAACATGATC
CCATATATGCTTAACCAAATCATCTTACAACTGAATATGAGTTTTTTAATCACGCATTTC
ATGATGAAATTAGGGTGAACTGTGCAGATGATGCCGCTTCTCCGCCATGCTGAGGCACCA
CATTGTCACCCTGAAACTCAACCTAGATAGTATCATTTGTTGTAGTTGTGACCGTTGTAG
GTAGGAGTCACCAGAACTGAGCGGCGACGGCGACGGGACTGGGGGTGAGGCGAGGGCTAG
CTGTCGGTGTTGTCGATAGGGGTGGAGAACGACCAATGTGCCATCAACTGATGGGTCAGG
GGATGGAGTACGTGTGCGTCATCCGTGTGCGCTTTGTGTCCGCACTGATCCAAACTGGGC
TTAAAATTTGGTCGAAAATGGGTCGACAGACGGACGAAAAACGGACGCGCGTACGTTTAG
GTCACGCGTTGAGCCGTTTTTTCTGTCCGCGTGGACTCAAACGGACGACGACGGACAGAT
ACGGCAAAATTCCAAGGAAGCAGGTCAGCTGCCAATTAAGCCGCTACTCCATTGCTAAGC
CTTAAAATGTTTTCAATAATATACAGTCATACAAGGCTACAAGCCAGCAAATGTTTTAAA
CACTGTACAGTTACATCCCTGGATTCAATAATACAGATCGAAGTCGATCAAAAACAGGAA
ATTGATGGTTGGTGAAGAAGGCGGCCGTGTCATGTCTTAGGAGGAGGAGGAGAAAGAGAA
GAAGGAGCGCTTGGTGGGCACCCTGCCGACGGCCTTCATGAAGTTGGCGAGCTCCATGAC
CCTGGCCGTCTTGGTCCCGCGCGCCGCCTCCGCCGACGCCCGCTTCTCCTCCGCCTTCCG
CCGCGCCCGCGCCACCTCGTTCTGCGCCTTCTCCGTCGCCTTGGCGCGCTCCTCCTCCAG
CTTCCTCTGCAACCCAACCCAAACCAAACCAGCAATTCTTGATTTTACGTCCATCAGAAC
ACAAGATCAGGGTTGAACAAGAAGGAATCCATCAAGTACCTCGATCTTGCTCAGGTAGGT
GGTGGCCGTGTGGATCTGCTGGTTCTCCCACCCGTTGATGACCACCTCCTCCCGCTTGAA
CTTGTTGTTGATCTTGGCCACCTCCTCCGCCTGCCACGCCGCCACCTTCGCCTCCGCCTC
GTCCTTCTTCACCTGCCGCACCTCCACCACCTCCGCCGCCGGGGCGCACGACGACGACGG
CCCCGCTGGCAGCGGCAGCGGGCGCCCGGCGTCCGCCACGATGGCCAGCGGGTTCGTCTC
CGGCACGGGCTCGTGCTCCCCGATCCGCGCCAGCTGCAGGTCGTTGTTCGCGGCGCCGGA
GTCCCCGGGACCGGGGCAAGGGTCGGTTGGCGGTCCGCCCCCCGCGTCCACCATGGCGTT
GAACTCGCGGCCCATGCTGGCCATGAACTGCTCGTCGGAGTAGGACGACAGCGAGCGCTG
GCTCGCCACGTCCCAGGAGGGCTGCCGCAGCGGCGCCGGCGCCGGGGACGGGTGGATGTC
CCGGAAAGTCGCACCGTCGCCATCGCCGTCCACGTCCACGTCGTCCTCCGCCGGGGCCGA
CGGCGTCGCCAGCCGCTGCAGACGTTCGCTCACCGACATGTGGTCGATCGGGTCGGAGCT
GCTCATCGGAGCACAGCGCCGGCGGATAGGACCCGGTGGAGTGGCGGACCCAGTTCTTGG
TGGTGGAGTTGGTGCGTGTAACGTAGCTAAGCACAAAGAGACTCAAGCACAAAGGATAGC
AGCTGGGTGGGAGGGAGGGAGGGAGGAGAGGAGAGGAAAAAATGGACGGCTGAGGGGACA
ACGACTCTGCCGGCCGGCAGACGGGGATACACGTATCACTCAAGCTTGCGGGCTATTTTT
TGTGGCCGATGAATAGCATATTTTTCACAGGAATGTTCAAAGATGATAAACTTGTTTGTT
AACTGCTGAGGCAGTGATGTCTGCTGCTCTCCGGCGGGCCTGTAAGCATTATTATGTCAC
ACTTGAGGCCAGTTTTTTATTCGATTTTCCCAGAATCGCCCTTCTTTCCAGCTTCTCTCA
CAATTGTCATTATATATATATTTTTACAATTCTAGCTAATTAGATAAGATTATAAAATTA
ATTAGCTAGGATTGTAAAAATAATTATTTCCTTCGTCCGTCACAGAGATGAAGCAGCCGA
TACCGTGTGTGAGCGGCGCATCGCGGCCGCCCCGGATATGGCGACCCCCGCCGACCAACT
GGGCGAGAAACTGAACGTCGACGCCTCGTTCTCCCATGATGATGGAAGGGCTGAGGTGGG
TATGGTGCTCCGTGATCAAGAAGGGGTCATCATTTTTACAGCTTGTCACTTGCTTCGGTC
GTGCCCGGACCTTCTGCATGTCGAGCTTGTTGGATGCATGGAGGGAATTGCGTTGGCCCT
CCAGTGGACGGAGTTGCCATTAATCGTTGAGCGTGACAGTTTGCAAACGGTGCAGTTGAT
CTTTGTATCAGGCCAAGACCGCTCGCAGTACGCCATGGTGGTTTCGGAGGTGAGATGTCT
TATGAGGGAAAGGGAGCGTAGAGTGACTCATATTTCTCGAGAGTAAAATAATATAAACCA
CACGTTAGCAAATTATGGGAGATCACAAGACCGAACTGTGGTCTGACTCCGATCTGACCC
AGACAATGTCACTAGATTGTGTAGGGAGGACCTTCTTGGCTATTGAGTAATACAACCCTT
TCACTCTCACAAAAAAATATTTCTTTCGTCCCATAATATAAGAGTGTTCTTAAAACTATT
AGTCTCAAGAACGCTCTTATATTATGGGATGAACAATATAGTTAGGATTGTAAAAAAATG
AAGTAACGATTCTGGAAGAAGCTGTAGAGAGAGGCGATTCTGGGAGAATCCGTCAAAAGA
ACTGGCCCTTGGTTTCACTTAGCAATGTAATGGAGTTGGCTCTGGAGTCCTTCTCCTCTA
AAAAATATAATATTTGTTAATGGGTGTGTCAATACAAATAAACCTCCCCTATGAAAGGTT
GTGTCCAATGAAACCCTTTTTATATCTATCTCTATCAGATCNNNNNNTTGCAAATAACTC
TGAAGGGATTGATAATCCTTTTTTAGCGTTGGGTGCAAGTGTNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTTGTTCCTCCTAGTGGATTGATACCTTGTTTCTCAACAAAC
TCAGGGAAATACTTATCTACTTCGTTGC