Map Locations of contig_50777 (9195 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_50777

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_65856 1 1611 bp MLOC_65856.1 Available Available LOC_Os04g41759.1, FRAME:+2, EVALUE:0.0, 13104.m04105 protein expressed protein





CDS Structure of MLOC_65856






Contig Sequence (9195 bp)

>contig_50777 9195 assembly3_WGSMorex_rbca.fasta
ATGGAGATATATGCTCTAACAGAGAAGAAATATACCAAAATGAAACAACGAGCTCACATG
TGGTGGTTGCGGGGTGGCAATAAGAACATCAAATACCTGCAATCAGTAGTATCAGCGAGG
AAAAGAGCAAATAGATTAAAGGAGATTTGTAGAGAAGATGGCTCGGTGGTGGTGGAGGGA
CCGGCCCTTACTAACTATGTCTGCTCTTTCTTTCAGGATTTATTCACTACAGCCAGCCCA
CACCGACTTGGTGAGCTGATTCATAAGGTGGAACCGCAGGTTTCTACCGCTATGAACAAT
GCCCTTGGGGCTGATTATACCAGAGAGGAGGTGAAGGCTGTGTTGGATCATATTGGGGAC
CTCAAAGCCCCGGGACCGGATGGTATGCCGGCGATTGTGTTCAAACGGCACTGAACATTT
CATGGGTGACCAGGTTGTCAAGGAAGTCCTCAAAGTTCTGCATGGTGGTGACTTCCTGGA
GGGCTGGAACAATACCACAGTGGTGCTTATCCCAAAAGTTAAGAATCCAAAAAGGATAAA
GGATCTCCGGCCGATTAGCCTCTGCAATGTTGTGTATAAACTTGTCTCTAAGGTTATCGC
CAACAGACTTAAGATTATCCTTCCTGAAGTAATATCCGAGAACCAAAGCGCCTTTGTTCC
AGGAAGGTTGATCACTGACAATGTGATCATCGCCTATGAGGTCTCTCACTACCTTATGAA
CAAGAGGAACGGAAAGAATGAGGTGGCGGCAGTAAAGGCTGACATGAGTAAGGCATATGA
CCGAGTGGAGTGGACCTTCCTGGAGGCCATGCCTGGCAAGTTGGGATTTAACAGACGCTG
GATTGAGCTAGTCATGAAGTGTGTAACCATAGTACGATACGAAATCAAGGTCAATGGCAC
GCTCACACATCAGTTCTGCCCTTCGCGGGGCCTTAGGCAGGGGGGTCCCATCTCCCCCTA
CCTCTTTGTCATTTGTGCTGAAGGACTCTCGGCATTGCTGCGCCACGCGGAGGAACAAGG
CACTATCCATGGCGTGAAGATCTTCCCAAGGGCACCGTGTGTTTCCCATCTGTTGTTTGC
TGATGACTCCATGCTTCTGATTAAAGCACAACAACAGGAAGCTGCGGCCCTCCATGATAT
CCTGCAACTATATGAAGCATGTTCGGGGCAATGTATCAACACGGAGAAGTCTGCCATTAT
GTTTAGCCCTAATACATGTGATCAGGACAGAACCTTAGTGAAGGCTGAATTGGAAATACA
CAGTGAGGATTGGAACGAGAAATACATGGGCCTGCTGGTCCACGTCGGGCGATCAAGAAA
GCAAGCATTTAAATACATCAAGAAGAATATGTGTGGGCGGGTATATGGGTGGCAGGAGAA
ATTGCTAGCCAAAGAGAGCAAGGAGGTGCTGGTTAAGGCGGTTGGCCAGGCGATTCCCAC
ATATGCAATGTCATGTTTCGACTTGACTAAGTCCTTCTGCGCGGAGCTGAATGCCTTACT
CGGGAAGTTTTGGTGGAGCCAGCAGGATAAGCAAAACTCTCTACACTGGTTGAGTTGGGA
GAAGTTGACATTTCCGAGAGTGATGGGGGGCCTTGGCTTCAGGGATATGCATACATTCAA
CCTTGCCATGTTATCCCGTCAGGGATGGAGAATAATTCAGCAACCAGACAACCTTTGTGC
CCGGATCCTTAAAGCTCGATACTTTCCCTCCTGTTTAGCTCTAGAGGCAGTGGCTCATGA
TGGCATTTCATATGCATGGCGAAGTATCCTTCAAGGCATCGAGGTGGTGAAACAGGGCTA
TATCTGGAGAGTCGGGGACGGTACAAGCATTAACATCTGGCGGGATCCATGGGTTCCTAG
GCCATGGTCGAGGCAAGTAATCACGCCACGGGGCGCCAGCCTGTTGACCCAAGTGAATGA
ACTGTTGTGTCCGATCACAGGTGGCTGGGACGAACGACTGGTGCGAGAAACATTTTGTGA
TGATGATGTCCGCTACATCCTGCAAATACCACTACGTGAGGGGGTGCAAGACTTCTACGC
ATGGCACTTTGATCCCAAGGGAGCACACTCCGTCAAGAGCGCATACAAGCTACTGGTACA
GCTGAATAAGCAGCAGCGTAGTGGAGCTCCTGGCATGAGTGCCGCGGGTGCAGGGCGGCT
CGATGCGTGTGAAGATCAATCCTGGAAGCGAATATGGAAACTACCATGCCCAGCTAAACT
ACATATGTTTGTGTGGCGAATTCGACATGAATCCCTCGCCCTCTGCACGAACTTGAAGAG
GCGAGGTATGACGCTTGACTCCGTGGCCTGCTTCGTTTGTGGAAAAGGGGAGGAGGATGG
TGGTCATCTCTTCATCAAATGCAAAGCTGTCAAAGAAGTCTGGCGGCAACTCGGTCTGGA
GCAGGAACGGCGTAGACTTGAAACTATCGGGGACGTGCATGCAATCTTGGATTCTCTTTG
GGGGCTAGCCGAGAAGAAGCGTGTCCTAATCATAACATTCTGGTGGCACTGGTGGAACAA
CCGTAACAGAATCAGAGAAGGGGAACCTGCTACACAGGCATTAGAGATTGTGAGGCGAAC
CCGTTGTGATGCACTGGAGTATGAACAAATCCTAGCTCCTGTTGTATCCAAACGCACAAT
GGACTGATGGCAGCCGCCACAGGATGAGTTCATCAAAATCAACCTTGATGGTGCATTCAC
GCCGGGCAACTTCTTCAGTGGGTGGGGGATTGCGGCACGAAACGCCCATGGTCACCTCCT
GGTCGCGCGAGCAGGGAGACAGGAGCAGGTGTCTGATGCCTTTGGAGCTGAACTTCATGC
CCTGGCGGTAGCGGTGACGACTGCAACCGAGATAAGGCGCCACCAGAGTTACCTTCGAGA
CAGATTCGCAACTACTTGCGGAGGCCATGGATGTTTGCCGTGCCGATGCCTCGCCCTACG
CCGCCATCATCGAGGACCTGAAGTACCAACCCAAGCTATGGTTCGCCCATTGGCGTGTTA
TCGCATGTAGACGCAATGTGAACACAGTAGCGCATGCATTAGCCCAAATTGGTAGTACTT
GTGCCGCTAATAGCTGTGTCGAATGGGACTCGATTGTACCGCCTAATGTGGCTTGTTGCG
TGTCGGGCGATATGCCCGAACGTAGTTGATTTATAAAGCTTTGCTTTTCCCTAAAAAAAG
GTGCCTCCCAGGAAGGAGTGACACACCGAACCTAGCAAGTCTATGAGCATCAATATTAGC
TGCTCGAGGTTCAAAACAAAAATTACACGACTCAAGTACTTGACAATTTACTAAGATCTC
CTTTATTATGCCTCCATCTTCTCCTCCTTCCCCATTAAGTATATGCTTCACACACTGCTG
GCAGTCTAAAGCCACCTGAACTCTTTGCAACCCGAGATCTGAGCTAGTGCAATGGCTTCT
CTACACGCTACAGCTTCAAGAATTGTCGGATTGACTAATCCTTGTATTGCAAGCACTGAG
GAGCCAAGAAACGTCCCCTCCTGACTCCTACAGACTGCCACTGCCGTCCCCATATTGAGA
CGTGTTGACACTCCTGCATCCACATTAATTTCACGTGCCCTCCTGTTAGTGCAATCCATC
TCCTCTGAACTGGTCTTTCTCCCCGGTCTATTATTGCATGACATTTTGTATCTTTGTCCA
ATTGGTCAAGTTCTGACAAAAAATCTCTGGACGAAAGCATGTGTTTCATAAGGACTTTGA
GTAATATCCTCGTGGATCAGTTGCCTCCTCGCGTACCAAACTGCCCACAAAGTGACATCC
ATTCGAATAAAATCTTCATGTTTTAGCACTTCCATCATAGCAAACAACCATGCCTTAGCA
GACCTCTGTGTTGTTTCTATCATGTGTTCCAGCAGCTCCGGATCGACCAATGATCATGCA
CATCACGTCATTGTACATTCGAGCAGGCTATGGCGTCAAGAGTCCCGGACACCACACACC
CCACATACATCTCTGGTGGACATATTCCTATTCTTCCTAACATCTTCTGTTGGGATAAAA
TTCTTGGCTAGCCTCCAAAGGAACAACTTGATTTTAGCAAGGATGTTACTTTTGGAAGAC
TGAACAACCTTGTGCGCCTAGGCCGTTTGGCGATACAGCAGCCCAGTACGCATTTGGTTT
CGCGGCCTGTGGCTACCCAACATGACATCGTGACGGGCCAGCCCATACAGCGAGCCGCTT
TACCAATGGCGCGTCGCCCCCGAAGGCCCGAACCCCGAGGCTGCTGCACTGCATTGGGCG
CCGAGGCCGAGCGGAGGAAACTGAAGCGTAGAGCAACCGGAAGCGAGTGAGACCCGAGGA
ATGCTTGGCTGTCCTTCTCGGGCCCTGGAACCCGGCTCCCTCCTGTCGCCTTCCATTGCC
AGCCTAGCCAAGTTGCCATGCATTGTAAGGCCGCACTGCTCCGTTTTAAGGCTCCACAGT
TAACAGCCCGGGAGACGAGCAGAGAGCTCAGCACCACTTCGCCAGCCACGGGGAGAGATG
GGCATGGCGGAGGGGATGATGCGATGCCGGTGCATGGCACTGCTCGTGCTCGTCGGCGTT
GCTGCCTCAGCGGTATCGGCCGTCAGCGACGGTGAGATCTCGCAAACTGGTGGCCACCGT
ATACGTCAACAAGCATCCCCGTACAATTTCACGTTTGCAGAGCTTCATGTTCTTCTTCTT
CTGGTTTGTTTCGGTGCCCTGTTCATATCTTGTCATGCGCATTTTAATTCTGACCTCAGT
CAGAGAGCCTGGTGTCAAAACTCTGACGGCGTGACTCCTAGGTAATACGCCGTAGGAAAA
CACCCAAGTAACTAGTGTAACACCGACTGATTTACGTTGGAAATTTTGTAGACGGAAGAA
ATAACTAGTGAAAAACAATGTACTATGCGGATAGTTCTCGTCGTTTTGATCATGCATATG
GCAGTCTGTACACGCCGGGATTGTCGGCGTTGACTGATTTTCCAACGTAAGGATGGTTAC
CTCTCTTGAGTGAGTGACGTGCAATTGTGCATTACGAAGGGGGTGTTTCTTTTCAGGGAC
TTTTTGGTGTAGGGACTAAAAAAAATCCCTTTTAGTACCATGTGAAAGAAATAGGAGGGA
TTTTTAGGAACTAAAAGGGGGGTATTTGGGGTTAAAGGAAGAAGTCCCTATGGAAGGGAC
TTTTTAGGACTTTTTGGCACTTTTTTCAACAGTACTTATACTTTTACCATGTCATTTAAT
AACTTCTAGTANNNTACTAGGGGTAACATGGTCTTTTTACATGTTATTTAATGACCTCTA
GTCCATGTTTAGTCCTTGGAAAGAAACGGGTAGGGACTAGAGACTTTTTAGTTAGGACTA
AAAAAAAAGTCCTAGGACTTTTTAAAGAAACAAGACCGAAATATAATGAGATTATTTTCT
GGGTCGTGGAACTAAGATGAGTTTCTGAACCAGTCAATGCTACTTGAATCATCTTGATAA
CAATATACTACTTGCAAACTTGCGAATTAATATCGGAATTCAAACGGGTGAATTGCTTTA
CCATGCTTGCTATGGCTAATAATACGTCGCGTGTGCGACCACCTTTTGTTGCACAGGCCT
ACTACCGAACGGCAACTTCAAGGACGGGCCAGCCAAGTCCGAGCTGAACGGCACGGTGGT
GATGGGGCGCCACTCCATACCCAACTGGGAGATCTCGGGGTTCGTCGAGTACATCCAGTC
GGGGCACACGCAGGGAGGCATGATGGTGGCGGTGCCGGAGGGCGCCTCCGCCGTGCGCCT
GGGCAACGACGCGTCCATCCGGCAGAACATCAGAGTCACGCGGCGCGCCTACTACTCCGT
CACCTTCAGCGCGGCGCGAACCTGCGCTCAAGCCGAGAAGCTCAACGTTTCCGTCGCCGC
GGATTCCGGGGTGCTCCCCGTGCAGACCGTGTACAACAGCGGCGGCTGGGATTCCTACTC
GTGGGCCTTCAGGGCCATGCACAGCGCCGTGTGGCTCGCCATCCACAACCCCGGCGTCGA
GGAGGACCCGGCGTGCGGCCCCGTCATCGACGCCATCGCCATCAAGACCCTCCAGCCTCC
CACGAAAACCAAAGGTGACATCGCCAGCTTCCCGCATCGATCAGTAGATTCAACTTCGTA
GCGAGTCCCAGTGATTCCTAACGATCGAGTGATTCAACTCAAACAGGTAATATGCTCAGG
AATGGTGACTTTGAGGACGGACCGTACATCTTCCCGGACTCGCCGTGGGGGGTTCTGGTG
CCGCCGATGGACGAGGACAGCTGCTCGCCGTTGCCGGGATGGATGATCATGTCGAGCACC
AAGGTGGTCAAGTACGTGGACGCGCCGAGGTACAGGGTGCCGCACGGCGCGCGGGCCGTC
GAGCTGGTGGCCGGAAGGGAGGCCGCGCTGGTGCAGGAGGTGAGGACCGTGGCCGGGCGA
TCGTACAGGCTGCAGTTCTACGTCGGGGATGCGGCCAACGGGTGCAAGGAGTCCATGGTC
GTCGAGGCCTATGTGGCGGCGGCGAGCCTGAAAGTCCAGTACCAGTCCCAGGGCAAGGGC
GGGTACAGGCGCGCCATGCTCGATTTCGTGGCCGTTGGGAACCTCACGCGCGTGGTGTTC
CAGAGCCTTCACTACCACATGAAGGTCGACGGCACGCTCTGCGGGCCGGTCGTGGATGAC
ATCTCTCTCGTCAGCGTGCACAAGCGCGCGGCTCGCCGACTATTCATGTGAACTTGATTG
GTCCATGCACGATGCAGCAACTAATCGCTTCTGGAAGAGTGGAAGTAAGAGCTGACATGA
GTAGGGAAATTTAGACTGTTGCTCATTTGATTAATGTAGGCCGCCGGAGGTCTGTCTGAC
CGGAGAGCGGACGTCCTGCTCGCGGCAATCTGGCATTGACTCTCAGATAAGAATGTGGGT
CAGAAACCATTCCAGAGCTATCTGGAATATTAGTGTGTTTGGTAGGCTGCATCGTTCTTA
AGTTATTTGCATTTGTGACTGAGTAAACGAGTTGGATATGGGCATATGGCTAAGTAAACA
CACGCATAATATATATCATATTTTGCACCTAGCTAGCTTGATAGCTTGCATTGCATCGTC
ATTAAGGTTTGAGGCCTCTAGCGTTCAGCTGGCAGCACTTCTAGGTTTGTCAACGTGCAA
AAGATGGTGTTTCTTTTGCACGTTGACAACCTTGATGACCTTACTACACATTGCACTACA
TATGCAACACAAAATAAATATCATTTTAGTCCTATCGAGTAAACAAACGATAGTTCATCC
TAACTACTACTCCCTCCGATCCAAAATAGGCGTTGTGATTTTAGTTCAAATTATTTCGTT
CGAAGGGAGTAGCAAATGGCAATACAAAATTAACAATCATGTGGCGTAATAGGGGAAAGC
TCATCGATGTCGAACCAGGGGGAAATCCACCCTTGTCTTCTTCTTTTGCCAATATTGCTT
CTCGTCTCTTGATGCTTCTTCTTCGGATCCTTGTGTTACATTTGTTTACGCGTATTGGCT
CAGGCACTTCAACATTTTAATTTTCCAAATTCCATGATCATGTGCCTCCACACCATGGCC
AAAGTCATCAACATCATGAGCCGTCACATATTTCTACTCGAGCACAAGCTTATTAACCCC
ATTCTAGAGTCCAGTTGTGGAGAATGCAACATGCAAGAACAAACTTAATTTGGATGGAAA
AGGAGAGGAATTAATGTCTTTTGATCAAGGATCTTAAATCTATTCTTCAGAGCTTTAAAT
ACCCTCTCAATTGTAACTCTAATCCTAGAGTGTCTAAGATTGAACAATTTTGCAGGAGTC
CTAGGATGGTTTCTGAAGGAGGAGTCATCCAAATGATACCTAGTTTCTCGAAGGCTGTAA
GAACACTAGGACGACATATTCATCATTTCCTAGGTAGAACTTTTCATCTTGAATGTTGAT
CCCATCATGTCGGGCCATGCCGTCAACAAGAATATTTGCATCATAGGTTGATCCTTCCCA
ATCAGATAACACAGTTGTTAACCGTAGATCAAAGTCAACAACAGCAAGAACATCTTGGTT
GTGTAATGCTTTCTACCACCATGACCTCGACACTTTAACAGTCCAATTAGAATCATCTTA
GTACCATCTATTGCGCCAATACAATCGTGTGATGGCATACAAATATATTGTTATGGCTTT
GTTACAACAATACAAAACATGTCATAACATGAACTATGAGTAAATGATGATGAATGTGAA
TTTGAGGATGGAAGCTGTAAATGAAGGCCCAAGATAAATAATAAGGAAAAATCATAACTC
GAATGTAATGTTGACGGTGGAGAAAAATAGTTCAATATCAATTGTGTGGGTTGGAGCTTA
GTGAGGGCCAAAGGGGGCCATGCCCCCCCCCCCCCAAAAAAAATCATTTTTTGGTTCAAT
ATTATTATTAGTTTAATATTAATGCTTTGTCGGCCATGATGGAAGAACCGAAGGTGTCAC
TAGAACTCCCGGCCGTTTGGTTCCAAGTTATGACGGTTGTTGACTCGTCTGTACGAATGA
GGAAGACAAAAGTCTTCGCTACAACTAAAGTTACTTTTTCTCTGCATTGCATCAATGTCG
TCAGTTAGTACGAAGTGTGTGATACCTTACCGTAATAAAAACCACATGAACACGTTCTGA
CACATCCGTATTTTGCTGTGGCACAACTTAATGAGGGCCAAAGGAGGCCATGCCCTCCTC
CAAGCACCTTTTTTTTACATAAGCACATAATATTTAAAACTATTTTAGCCAAATTAAACA
AAATACAATTGATTACCCACCTCAACCCTATTCAGATCTCATTTAGCCCCCTTTCAAATC
ACGTTGAAGGTCCGCCACTACCGGTTTGGAATCACACGTTCACACATCATGTTTTTTTTT
TCTCGAGTTCAATTAAAATATTGTAACTCCTTTGATCCACCCAGTTTCTCTTTTTTTCCT
ACGAGCACCCCCTCCTTTGTAATGAAACGAATCATCGGACATGGAGTATATGAGCTCGAG
CTCATATACTCCCGGATGAACAGTAAAATTAAAAAAAGTAGTTAAAAAGGTTGAAAAAAT
CTGAATTTTTGGGACATGAAACATTGGTGTTTTTTCTAGATGCGTGCAAAATTTCATGGT
GAAATCACATTTGTAGAGGGGTGGGCAAAAAAAAAACAAAATCAATGCTCAAAATTAGTG
TTTTTTGAAGCATTT