Map Locations of contig_50703 (8153 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_50703

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_65812 1 743 bp AK369466 Available Available None
MLOC_65813 2 1513 bp AK369535 Available Available None





CDS Structure of MLOC_65812






CDS Structure of MLOC_65813






Contig Sequence (8153 bp)

>contig_50703 8153 assembly3_WGSMorex_rbca.fasta
CGCCGTGCACGAGGTCGCCGACGAGGCCGAGCTCGCCGCCGCGGTCACCGGGGACGAGGC
CGTCGTCGCGCTGCCGGCGGTCTTCGTGGGCGGGCGGCTCCTCGGTGGGCTCGATCGGCT
CATGGCCGTGCACATCTCCGGCGAGCTCGTGCCCATACTCAAGGACGCCGGCGCGCTCTG
GCTCTGAGAGAAATCAAGGAAGCATACGGGACGGGGTATTACGTACGCGCGTACTACGAC
CGTTTGATCAGGAGTTCGTAGTTACCAATTCTTTTTTTCATTTCTCCATTTTACTCTTGA
GATCATGTGAATTACTGCTGCTCCAACTTCCTCTCTTGCTAGGGATCAATCAGTAATGGT
GATGCTATATATTATGGTAGTTACATAGACGATAATAGTTTTAAGTTATTTGAAGTGAAG
TTAGCTTCGACCACAAATCTCTTGTAAATAGATCGATGAGTGAAGAGAGATGTACTATAC
TACGTCTCTCTTTTCAAAATATGTGTTTCAATTTTATATTAATTCTATTACAAAGTTATA
TTAAATTTAAGACATTTATTTTAAGATGGAAGAAGTACTTAGCAGCGTGTATACATGATG
TTCGTTTCATTCTGTACAGCAGCAAGCTTTGCATGGTTCTCTTCTCTTATTGACAAAAAA
TGTGGTCTGATCTTCTGATACTTTCATGGAACGGCAATGTGGCGGATATTCTGATTGTGT
TGAGAAGAGAAGCCTCCTCCCAGGACTAGATATTCCAAGTACGTACGAACCAAAAAACTG
AGTTTGTGTCGATTTTCATCTGATTTTTCACTAGTGAGCCTAACGATTTGTCTTCTATTT
AATTAATTGATGTGGCAAATCTCTTGTCTTCAATTTTAAAAAACAAACTACCGAGTACAT
CATGAGAAGTCGAGGCCAGGCAAAGTAAACGTTTAACATGGAAATCTCCCATCAGCACCA
CTGTTTTATCCGACGTACTACCTCCTTTACAGTTTAGAAGACACGCACGTGTATCTAGGT
CGTTAATTTGATTTATATACAATCTATTATTTAATATAAAAATTATATTATTAGGAAATA
GAACATCTAAAGTTTGTAATGATATATTTTTGTAATATATGCTTATCATTAAGTTGATGA
AATTAACAATCTAGGTTCACGTGTCAGACTTATATAAACTAAGACAGAGTACTACTAGTT
GCTGCGAGACGCGGACATATGGCTTCAACATCGATTAATTTCCCTGTCACGCGGTCTTGA
GAGCACTGCGTCGCACCAACCCATTGACTCAATCAAGATGAAGCACTAGTACAAATAATA
TGAAATGAGCGTTGACTAACTCCATACGCGTACGTTAAATAACTGCCCATTGCTGATGCA
TGCTCCGATGCTCCGATCTAAGAGCATCTTCAACTGACGCAAAAAAAAGTCTCGCGATAA
AAACTTGCATTTTTATGTGTCGAAGATAAAAAAATATAGTTCTTCACCAGAGGCTGTCAA
ATAGGGCACTGGACAAAAAGCGTCAGTGCCCGTGCTGTAAATGTTGGACGTGCTGGTTTC
CGGGCTGCATATTTGAGACGCCGGATTATACGGGCTGGACACTGCAGGTGGGATCGTCGG
ATTGGTCGCCATATTTTACAGCACTTGTTGAAGCAAACATTCTCCAGCGCGCTAAAAAAC
GTTATTTCGATGCTGAATAAAATTTGTAACGCGGGTGCTAGCACATGTCTGTTTTTTTTT
TTTTGTAAGGGCTAGCGCGTCTGTTAGAGATGCTCTAACCGAAAAATGTCATTCATCAAC
TAAAAAAGGATCACTGCATAAGCGGGTAAAGTTGGCACGTCAAGCTCAGCAACGTGTCGT
GAAAAAGAAATGCAAGGCCAAACTAGTGCCGACTCTTACGTAGTGCTCTACAATCTACGT
ACGACGAACGGAAAGTCTGATCAAAGCATAGATGCGTCAAATAAAAGAAACCTTTGACCA
ATTGTGCATTGCTGACGTTGCATGCATCGCGTGTCTGATAATGGGAATTCCACCTTTTCT
TCTACTGGGAAAACGACGTGATAATGCCTTCGAGGTAAAAAAAAGAGAGAGAGAGATAGT
ATGCTACTGCATGAGCTGGTGAAGTTGACACGTCAGTGACGGAGCCAGAAACTGAATATA
GAGGTGGTCAAAACATGTCATATAATGATAGAGGGGGCCAAATCATCTAAACCTAGTTAA
TTTTGTTTGATAAATGAAAGATTACGACTATATACAGGTGCATTTGTGAGAGCATAGGGG
GGTCAAGGCCCCTGCCAGCACCCCCTGCCTCCGCCACTGCACGTCGCCCTCGGACACAAT
TCGCCCAGATCCAGATGAGCTCAGCAACTCAAGAAGCATGATGGCGTGAGCCAACGGTGG
GTGAATTGAAAGAAGAAAGGGACGCTGAAAAATATCAAAGTGAAACGGTCAAGAATTTCC
AGAAGATAGATCGCCTGTGCTGAGCAGTCTGATGACGTTGGAGAACTGGAAAAATGCACG
CATGGCTTCAACATACAGGCCAGTTGGTTCTAGTCGTTAGGTAGATCTTTTTCTTTTTCC
TTCTCTTAATTCCGGTCAAACTTGAATCAAATTGTTTCTTGTGGAATCCCTGTAAAATTC
TCGTCGATTTCCTGACCGCCAAGTTATATTCACAGCGTGAATTCCACCTGGAGGAGTGGT
GATCTTGATAAGGAGATGCCATGACGCCTCCCAGAATTCAGGTCCATGTTCAGCACAACC
AACCAGGAGCCGTGATCATCATCATCATCATCACAATTTAAAACGTGTAGAAGTACTCAG
GTGACGACCACTCTGACGGCGCCTTGTGCCGCCTACCTACGTGGTGCGACGAAGGCCACG
ATACGACTATCGATGTGGGAGTGGGATGAACATCTGAAAGATCAGATCACTTCGTGAATC
CTGACATGAACCAACAATGTTTAAACAAGTAGTCAACTTAGGCAATTGCTTGCCGAGACG
GCTCCTGGATAATCCATGTCACAGTGTTGAGCATCTAGTATACTGAAAATGCGTCATGGA
TCACTCACTGCCAAGTGCCAACGGTCACCAGTCCATCCAGGATAAGTAGGACTTGGTCTT
TGCTAAGCAACAATATCTAGTAAGAGAAACGAGAAATTTAATTAAGAGCAACTCCAACGC
GCCGACACAAGCGAACGCACTCTTTGTATGCTTTGCGTTTGTTTGGATCGGCCAGACGGA
CATGCGCGTCCGTTTTTTATATGAGTTGGCTTAAGCGCCCAACGGGAGGCGGACACAAAT
TTACGCATGAAAAAAGGAAATTGAACCACACGTGGCACAAATAACAAAAATAGGAATTTA
ATTTACAATAATTGACCGGTCAACCGCCGGCCAAATTCTACTTTAAACTTAATTAAACAT
TAATAGAAACAAAACAAAAAGTTGACGCCTGCACGCAGCCCTAGACGTCGGTCTTGTCCT
TACCCTTGCCGTCGTTATTACCGGCAACGATGTCGACGAAGACGGGAGGCGGCACAGCCC
AACCGAAGACGTCTTGGTAGGCCGCCTGGCAGTGGTGAATCTTGAAAGAAAACAAAGGGG
TGACTCAAAGTTAATGGTGTGTAGAATAAGTAAAACAAGTACCAATTTTTTAGTGCAAAT
GAGGTGGAAATTTTGACAGAAATACTAGTAATTTTTTGTTTTCAACTTTTGGAGGGGGGC
TCGAGCCTGTCGAAGCCCCCTGGTAGATTCGCCACTGCCACCAGGGCTGCCTCCTCCAGC
GTCTGCTGGGGCGGAGGCAATGCGGCGACGTGGGCGCGCTCCTCCTTTTCCTCCCGCTCC
CTTTGCGTGCGCTGTTTGGCGTACGCCCTCTCGTCCTTGAGCCGGCGCTGCCGCCAATGT
TCGAGCATAACTTATTGCCTTAAAACATCATATGCATTTTACAAAAGAAGTGCAGGGAGG
GCTAGCTCTCGTCTACATATGAATTAACTAAATCTCATCTAAGTTACACTAGCATGGAAA
AAGAAAAAAAAAATACATGAATCCTTCAAATGGCATAGGAGTTAGATGAGATTTTATTAA
TTCTCATCTAGATGAGAATAAGCAAATCTGAAGAAAAAAAAAGCATGCAAAAAAGAGGAA
TAACCTCAAAGGTTATCGGTCCGAGAACCATGACTTCAAAGTACTTGCGAAAAATAAAAG
AAAAAACACGAGGAGATACCAGTTTACATCGTACTTCCTATTAAAAAAAACAGGCCAAGA
TAAATATTTATCACTGGTGGACGACAAGTTGAATACTATATTATCCAACCTTCATATCAG
CTAAGAGCCAAATCAATAATTATTTCAGGAAAGGAAATAGAACAATGACTAGCTCTATTC
ATACAGCTAAACTTTCCCATCAGAGGGCTGGTGATATATATTCTTCATGGCTAAGTAGCA
TCGTTCAAACTTGAAAGCAAAAGAAGGGCATGCACCCAGACACCAACATGAAAAAGAACT
CAGGTGCATTTATACAATAGGACAGCAGACACAACTTCAAAACTACTCCATTCATAGGAG
TAGTAGTACAAGATTTGCCATATACCCAGCGACTCAAGTCAACTATCTCATGTCCACTGT
CATAGTTCTCAAGAGCCCAAACAGAGAGTTGGCAATCGTCCATTCGCCAAGCATACAGGC
GTCCTCGGGACTGCCCAAATGAAGGACCAACATATATGTTTGTCATGGCAGGTGGCAATT
TCATTTCCCGCCACGCGCATTTCCCTGCATGTTCACGGTGACTATCGAAAAAAAAAGTTA
CAAAAATAAAGGATAGTGCCATTCAGAAAGAAGCACCATGGATTATTAACATAATCATCG
AGCTGACACCGGATGGAAGTCCATCCTCTAGTTTTTGACGAGTAGATCCATGTTATCGGC
ACGCCGATGCCAAACACGGGCACAAACACCACAAAGCGTGAAGGAACGGCCAGATCAAAG
CCCAAAAAATATTGCCCTGGGATGACATGGAAAAGGTCTTCATCTGCCTGGTTGTGCAAT
TCCACAGGGAAAGGAGGCAACAAAGGCCACTGCTGAGTAGCAGGATTGCATACGACGTAA
TCGACTCGACCAGCTTGAATTTACTGGAGACGTCGTAGTAAGCTTAATAAGGAGATGACA
TAATGTTGACATGACGACTTTCAGAATCCAGATTCCTGTTGCTGAGCTACTAGCACAGCC
AACCAGGGGACGTGGCCACAAATTAATCAGGTGACGACTCCGACACCAAGGCCACGGTAC
GGTGACGTGAGAGTGGGATAAACGCCTGGAAGATCATCACATCCTGACTTCAAGAAGGTT
TGAACAAGTAGGTGCTCAGCTTAGTGGTTGGATGACAGACACATTATACAACGACCCATG
AGAACACATCATGGATCACTGCCATGTCTTCTAGCCCATCCTAGCCAGTGGAAGCAACAT
TTTGGCTAATCAGGACCTGGTCTTTGTTAAGCAAAATTATTATAGTATATGGGTCGGAGA
AACGAAAACCCCAAGCTACAACCAGGGAGAGAAAACGGCTTTGGCACACAAACTACAGTT
AGGCTGCAGTGCAGTGCATCACATGAAAGCACTACTCACATATATCAAAGCTATTGCCCG
TGTTTCGAATATCCCCTGCACATATATCATCATCCCCTTCTCACTGACTTGAGGTCCTTC
CTCATCTGCTCAGCCTGCACCAGAACAACCTCCAATACACTCACCTTGCCACCAGACAAG
ACCAACTTGACCTTGAACTCTTCTTTCCTTGACGTTTTGTCCACAAGTACACCCCCTGGA
ACATCCATAAAAAACAATCAGTTGCTACATTTGTATTCTAAGTTCCATTCAGAAATTCGG
CTAGTACTCGCAGAGACACAAGCCAAAGGGTTTATATTGTACTGTAGGTTTCATTCAGAA
ATTCGGCTAGTACTCGCGGAGACACAAGCCAAAGGGTTTATGGTCATAAGCCAGAACCAG
TTGTTGCCACTTCCCAAGACCGCGATCGACCAACAGGGCAAAACCCAATGCTCACTAAGC
TAATGCAAGCCAGAAGGTCAGCAGTGCCCTCGAAGCCGTTTGTAAACATAAAATTCCTAC
CTTGGTTTACAGAATGCAATCTGACTTAGAAATACTGTCCATAAGCTTGAGCCAGAACAC
AGCATGAACGGCACATACAGCTGCTTTACTTACTGCACTTATCATACAATTTCCTTTCGA
CCATAACTTATTGTCTTTAAACATCATAGGCATCATAGCTGTATATGTTCATATACAGCT
GCTATAATAACTTATACTCCCTCCATCCCAAAATAAGTGTCGCAGATTTAGTACTAAGTT
AGTACAAATTTTATACTAGATCAATGACACTTACTTTGGGACAGGAGTACTACCTTTGAA
GAATCCAAATACCCGGAGGTACCGGATGAAATAGGACCAGAGGTGCCCACACAAAGAACA
TCATGTTTCTGATGTGAGACCTAATATGCAAATTCATGTGGAAATGTAGGCAGTATATCT
TGTATCTACAAGACTTTATATCCGATCAAGTTTTGTCCTTTTGGACCGGGTTTGGGTGGA
GAACTGGAGCCCAAGCTACACCTGATTGCTTCCAGAGAGGGCCATCTAAGTCGGTCTGTC
CATGCTCAGGTCTTAATCCTAGACAGATCTAAATAAAGTTCCCAAAAGATCAACATAAGG
CTGACCATACTCCCTACAAAATGTGACAAATATGAGCAGAGCATAAACTGTGTAATCGTT
GATGCCTCTTCGTGGTACAGCTCCCCGAGACATCACCCAAGCAAGAGGCACACTTCAGGC
TCGACACATGCCTAAGTGCAAGTCACTCGGCATCATGGTTTGTTCCAGGCTTCAACGACA
CATCCTGGTTGAACTGAGCCTTGCACATCGAACCCGTGTTGTATGCTGATTGCGCCCTTG
ATTGGAGCCTCATCAAGGGCGCAATCAGCATACAACACGGGTTCGATGTGCAAGGCACTA
CATGGACAGAAACAGAATCATTGTATTTTTAAGTTCAAGCCGGAGAAGCACCTCGCTTCC
CAAAAGGCTAAAACTAGTGGCTCTTTAAAAAATCTTATTATGCTAACACCCTTTCATAAA
ACCACAGCGGCAACATATTTGCTTTAAACAATAGAGGACATGGCAGAATCCTCTCAGTGT
ACTCAGCTAAATTTTGCATACCCGAGGAGTCACATTCATTATCTCTCGCCCTAGTTGGGA
GGAGGGGCATTTCCAGTTTTCCATCAGTTCATCAAAACAGAGTGTCACTCACAAAGAAGA
TTTGATTTCGACGCAGAAGTTGAGTCAATTACCATCTCTTAATTTAAAGTCACATTCAGT
TAATCTCTTACCCTAGTTGGAAAGAGGGGCATTTCATCAGTTCATCAAGACAGAGTGTCA
CTCACAAAGAAGATTTGATTTCAACACAGAAGTTGAGTGTTAAGATGCATAATGACCACA
ATTCCATTAAGTCTACACACTGAATTTCCTTTTTGTCGATCACCCAATGCAACAGACAAA
TACGATCATGAACATGAAAAATCCGACATGTTTACACCACAAAACATAGGTGAAAGTGAA
ACTTAACATGTTACTTAAACATTAACCCATGGAAGCCAAAACATTCATCACTTCCTATAT
CAGCGGCCTTCATCGGCCATCACAACTAAATGCTCATGCTTTTGAACTGGAATAGGCAAT
TCTTGCAAACCTGCTATGTAAATGACTGACGCAATAGAGCAAAATCTCACTGCCGCGGCC
TCCTGCGGAGCACGAACACGTCGGATTCCTCGAAGGCGTACTCCGGGTCAAGGTGCTCCC
GGGGCACCTTCTCGATCACCGGGAAGGCGGCGGGCACTGCGTCCCAGAAGGCCTGGTGCG
CCTCGGGGGACCGGATCTGGTAGCCGAGGAGCACGACGCCGCGCTCGGCGTCGGCGAGCG
CGTCCATGGCGGCGACGAGGTGGGGCACAGACTCCTGGACGTACACGACGTCGGCGGCGA
CGACGAGGTCGTAGCGGCGCGGGGCGGCGAGCTGGGCGAGGTGCGCGGGGCAGTTCCAGT
GGAGCTGGGCGAGGCGGGGCGCGCGCGGGAGGTGGCGGCGGTTGCGGCGGAGG