morexGenes - Barley RNA-seq Database

Contig contig_50655
Source Contig contig_50655
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_50655 (9872 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_50655

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_65780	2	2175 bp	MLOC_65780.1	Available	Available	LOC_Os03g29540.3, FRAME:+2, EVALUE:8e-85, 13103.m12878 protein ATP-dependent protease, putative, expressed
MLOC_65781	5	1696 bp	MLOC_65781.1	Available	Available	LOC_Os02g15160.1, FRAME:-1, EVALUE:3e-74, 13102.m01688 protein OsFBX40 - F-box domain containing protein, expressed
CDS Structure of MLOC_65780

CDS Structure of MLOC_65781

Contig Sequence (9872 bp)

>contig_50655 9872 assembly3_WGSMorex_rbca.fasta
TCTCAGTTTCTTAAAATTGAGAAAAGTTATTTGAAGTTTTAAATTATTTAAAGTAGAAAA
ACAAAATGAAATGGAAAATAAAAATAAAAAACTAAACTAAAAAACAGGCGCCCACGCATA
GGCCGGCCAAAAGAGGTGCGCTGCATCTTTTTCCAATGCCCAGAGCGTAATATAGGACAC
GCCTACATGGGCCGGCCCAGTCCGAAGATTTTTCTGTTTTAAACGTTTTCTGTGACTTAT
AGGTGGCATTGGTAGGTAATTTTAATCAACTTTAGAGACAATTTGAATGACGTACGGCAG
AAACAATATTTGCTTTATTAATAGGTAAAGATTGGCTAATCATGTCTCGACGAGGAGACT
CCACTTGGGTCCAGATCCACCCTCCCCACCCCTCCTTATCCACAAGAGAAAGAGCTGTAC
GGTGCAAACAAGGTGCGGCCCGCCCGCTGTTCGTCTACCTACTCGGCCTTGTCTGTTGCG
TTGGAGTACTATTACTATACTATACTAATACTCTGCTATACTACGTGATAAGAAATCGGT
GATATAAGCACGCATTTCGGCAGCATCAATCTCAATCTCAATCTCAATCTCAATTCAATC
ATCTCCAAATATAAAAACCGGACCAGGCGGCAGTGGGTATGGCGTGGGGCCCACCACCAA
CCGGTAGATCGGTTAGATCTGATGGGCTTTCGCAGTCCATCCACTTATAAAACGCCATAT
ATATATATATATATATTCATCAGTTGGTATAAGTGCTAGGCTCTATCACTCTATCCTCTT
CCCCCGCCCGCCCTCTGCCGGCCGCCTCCCCTGCCCCCTCTCCGACCGCCACTCCGATCC
GCTGGCCTCCTCTGCTCCACCTGGAAATTTTCCAGCCCAAACAAAGGTACACGGCGGCGC
TGCATCCCTCCCTTCATTCACGTTGATCGCTCGCCTTTTTTTTTTGCCTTGTTAGTTGGC
CACATGATATGAGGATATGATCCGGCGGCTTCTCCTCGTCTTATCCATCCCCCCCATCGC
CTTCTTTCTCGAGCGGATCTTCTCGCTCACTCACATCTGGTCCGTCAGACTGGTGCCAAG
AACCGCGTCTCTGAGAGCCAGGGTTAATATTCGTACTAGTTTTTGTTCTTCGCTTATCTT
CTGCTGGGAAATAGTATTTGGGAGAACTTTGCCTCGGTTCGATTACAAGCCAGTCTACAA
CTCTGGTTACAGCTGCCAGGATCACCACCACCAACTTGCCTCGGATGATTCGTATTTGTA
TGTACTATCCATAGTGACCGATTTTCTTTGGAAACAGTAGAAGCTTTTACACAACTCTCT
GGTGGCTGATACAGAGCTATTTCACTGCAATTATGGGAGTGTTAATGCCTTCTCAGAAAA
GGTATTATGAGAGTGTAAGCAATTTTCTTAGCGCGTCGATTTGATTTTCGTTTAGCTGTT
GCATGAGTTTAGTATGTCTGCAATTGACTTTCGTTGCTTATTAATGTTCCAAGACCGCTC
AGCAGCCAAATAAAAGGATACAGGACAATCATATTCAGAAGGTTACTGAACACATCACTT
TCTTTGTCTTTGGGTATCTCTAAACAGGCTCATCACCGGAACAGGACTTTAAATATATGG
CCTTTAAGACTCTGCAAGTTCCATCCAGTTTAGCAAGGCCAGACAGCTGCAGTTTCACTC
CCTCCAACCCCAAGTCTTATTGCTATCACCCAAAACCTCACTCAAGACCGCAAGCAAGAA
TCGCCACGAAGAATCGCCTCCACAGTTCACCAGTACTGAAATGCAGAGCCAATCCGCACG
GCTGCGTCGACGATGTTGTCCAGTCCCGTCAGGATCATCAGACTACTGAGATCCCCATAG
TCCTCCACCAGTCGGTCGTTTTCCCTGGCCAGACGCTGCAGCTGCAGACGGTTGAGTTCA
GATACCGCATCATGATGCACACACTACTGCTCCAGGAACGCCTCAGCTTTGGTATCATCT
ACTCCGGCAGGGAAGATGATAGTAGTAGGATGGCCGATGTTGGATGCATGGTCCATGTCG
TCGAGTGCGACAAGCTCGTCGATGACCGCTTCTTCCTGACCTGCGTCGGCGGAGACCGGT
TCCGTGTCCTGGAGGTCGTCAGAACAAAGCCCTATGTCATCGCAAGAATTCAGGTACTGA
CTGACAGAGACTCGCCCGATTCAAGTAACCTGGGGTGCCTGATGCAGCAGGTGGAAGGGC
ACCTGAAGAACGTGACAATGCTTTCAGACAAGCTCAACTGGAAACTAGTGGTAGACCATC
AGGCTAGGCAGCTCAGCAGGATGCATTCCCCGGAGTCTTTCTCCTTAGTCGTGGCTCGGT
TGTTTGTCGAAGACCGTTCAGAACAGCAGTGGTTGCTCGGGTTAGACGACACAGCGCAGC
GATTGGTGAGAGAAGGGCGGTACCTTGAACAGAGGAGCAAGTACCTGGCGGCCATAGCGG
CGATCAGGGACGCCTTTGGGCAACTGTCCTGCAATGAGAAGCAGTAGCAGGCCTGATGCA
TTGGAGCTGCCATTCTGGTAATAGATATGTACTACTTGGCTACATTGTAGTTTAATATTT
TGCTTCTTTCTAATGTGTATATATTGTATATCCTTGAATGTTTGTTTTGTGGTGAAACTT
CACAAACTTCTGGATGTACTTTGTTACTCAGTCATGTATAAACACACCATCTTCAAGGTT
TCTAGAAATTATGAAGAGTATACAACTACTGATCGGGAACTCATCAGACAGAACAGCACG
CTTTCTTTTGTGTTCCTCTTCCTTTTTCTTTTCTTGGAAGGGAATTCCAATCTTTCATTA
AGAGTCACTTGCCATTCCAGGTTTATTGATTGCATGATGTTGTTATCGCGTAGACAAAAA
TAAAATAAAATCTGAGGACTCTGTTCTTGCTAAAAAAATCCTATAGAATTGGAGTGTAGG
AAAGCATCTCAACTCAATTTCTTTAGGATTTTTTTTAGGAGTTGCTCTAGCTAAGTCCTA
GGAAATTGTGTAGGAAATCAGTTCAAATAAACTGTGTTGGTCGCTTTTTTTCAATTGAAA
TGCTTCGAAAATTGAAGAAAAACGGTTTCCGAGTAAAATTGGACTGAAATCTTAAAAATT
GGATTGACAATCCAATAGGAAGGAGTCCAAAGAGGGGAACAAAAGGATAACACATCCATA
CTCCAAAGGACTCGTTCGCACCACTCTCATTCATACTTTTCCCTATTGTAAGTAAACGAA
GAGGGAGCTGAAAAATCTGAAGCTGCTTTGGCCCATTCATAGAAGCGACCTTCGCTCCAG
GAATCCTCAAAAGCAATCTGAACTTGTTGGATTGAACAGTCAGTTGATGAGAAGTGTAAA
GTCATAAAAATAATTGTAGCCGCCGCTAGGAGAATCCATTGGCCGCTTTTCTCCAGCGGC
TCCTCTCAGTCGTCAATGGTGATGGGTTAAGCAGATCTATACGTGTGGATCATGTAGCTT
TAGGTTAGACCCTAGTAGCTTAGGTTTTTGGTCGTTCATCGTCTTGCCTTTGGCAATGGC
GATGGCAGCACTAAATAAAGAAACTTCAGATCCTTCTTCGATAAGGCAATTGGTTTTAGG
ATTGGGGGTGGATTGAGAAACCAGTCTGCTTAAGCAAACATGACATGATGGTGACAGCAT
CCTCGATGTTAAACCTCATGCGTTGTGTATGTACTTGTACCGTAGAGTAGCAGTAGCGTA
CGTGGGTGCAGTTTTGTTAGTCACGCACCCACGATCGCCTCCTCTCGAACATGGCCTGGC
TAGCACTACAAGAAAAATGCTAACTTTTGACCTTCAATATTTGTCACTAAATGGTCGCTC
GCTGTTTTCCATTTGTGACCTTTTTGCGACCAAAAACAGTTGGTCAAAAATTGTCCATCT
CTAATGAACTTTGACGACAAAAATGAAAGGTCGTTGTTTCTACGACCAATTTTTTGGTCA
TTGGCAACCTGCCCACACCATGTCGGATCCAACGTGGCAAGCTGACATGGCAAAATTACG
ACCAAATGATAAGGTCGTTTATTAGAATAGGCCCGGTCCAGTTTGGTGTCTATACGGGTC
AAGCCCATTAATTCAGCATATTTATTGTTTTTTTCTTACAATTTGTTTAGCTACATGGGC
CAGGCCCAACAATTTAGCCTTTTTATTCATGGGTCGTGGACTTTTCGTGATCTATTTCTT
TTTTGGGCCTATGTATTTTTATTTTCTTAACCTTCACCTTTTCACAATTGATTTTTTTAG
CGATTTTGCTCATTTTTTAATTGTTTGATTCGTGGCCTTTTTAGGGCCCTAATAGTATTT
GTTTCATTTCTGACGTATCGGCAATAAATAAGCAATATTTTGGTCAACTGAGCCCCAATC
ACACAATTTTTCACAAATGATGACCAAAATGAGTATATTATATATATTACAATCATGCCA
TAGTTTACATCATCCAGGAATTTAGAACAATTACAAAATTGTTGCTATGAAGTACTCCCT
CGACCCCGAAATATGTGAATCAAAAGTGACTTAACTTTATACTAAATTTAGTAAAAACTA
AGTCATTTTTGATTCACTTATTTTGGGACGGAAGGAGTATATAATTAGCTACAAAGATGA
AGTGTTCCCTTCTTCCAACTCCTTGAGCCTAAAGCTCCTGCAAAAGAGAGTAAATTATCA
TTATCATGGATGTAAATTCAGAATGAAAGAAATATCCTCCTACAAAAAATAAGAGGAAAA
GAATATTGAACAGAATAATAAACAAATACACAAGCAACTAGGAGTCGATCCTGAAGCATG
AGGGCACAGATAACAATGGCAACCATGAGTAAATATTAGCAAACATTATAGGATTCAATT
ATGCAGCGGCGCCGCTGCTGGTGCTCCCATGCGACGGCTCGTATGCACATGTACCTAAAT
AGACGTAAAGATTCTGTCTAATGCTTAAAATTCAAAAAGTTTTATTTTTAAAACCGTTAA
TTTAATCGATGATCTGTTTTCACCGTTGACTTTGTCATGACAAGATCTTCGAAACTAGAT
CNNNNNNNNACATGTTTCGACAAACTTTTTTTCTTTCCGTCATTGCCACATTGTTCCACT
CACTTGCTATATTATTAACCACTTACTTGCCCAATAAAAGTAACTTAATTTCCATATTTT
TCATGTCGTTTCGTGCAAAGATTGTCGATGGTTATAAATGCAGTCCAAAAATGTTTTGAT
GTGCTTGTCATTTTTATTCTACTAAGTTGTCATGTGGTCTCATAAAGCTTGTAGGTGCTT
ATAAAATCACAGTTGCCACATATATTTTTTGTATGTGTGAGGTTATGATCTTTCGAAACT
AGGAGTCCTATTTAAGGAAATTAAATCTTCGTTGTGTGTTGCATATGACAATGTAATTTT
TTTTGTATGTGTGAGGTTTTTTGGGTTGGTCATGTACCTCAGTTTCTACTGAACCTGTGC
GCAGGCAATATGTCTAGCGTTGCACTTTAATGGAATGCAGCATTGTGTTCCTTTAAAAGG
AATTTCTTGATGTGATCTCAGTAGAAGCTACATGCATGTCATCTCTTTCGGTTTGGGTCT
TTACGATGAAGGACGGTCGGAGATCCGTTTCTGGGAAGACATCTGGCAAAGAACAGTATC
CAACCTTGTATAGCATTAATCGTGATAAGGATAATACTATTATGCAGGTGCTCAATCATT
CGCGCCGAATATTTCATTCAGGCGTGATTTGATTGGCCCCCGACTTATGTCATGGCATAA
TCTGTTATTCCGTCTGGATTAGATTAGCCTGTCACAAGGCCGGGATGTGTTTCGCTGGAA
CCTTACTACATCAGGGTCTTTCACAATAGACTATGTACCATGCGCTCACGCATTCTGAGG
TACCGATGAGTAGTAGCAAGAAAATTTGGAAGGTGAAGATTCCACTAAAAATTAAAATCT
TCATGTGGTATCAACAATAACAACAAAGCCTTTAATCCCAAACAAGTTGGGGTAGGCTAG
AGCTGAGACCCCTAAAATCTCACAACCAACTCATAGTTCTGGCACATGGATAGCTAGCTT
CCAAGCATCCCTATCCCTGGCTAGTTCTTTGGTGATACTCCAGTCTGGAATGCGACAACG
ACAAATCTAAGCTCCTTTCGGGATCTCTCACAAGAGTTCATGTCCTTGTCCATGATAAGA
TCGTCCTACGGGAGGTTGAAGGAGATGTGTTTCCTCCAGATCATCTCCTCCTGAAGCAAT
TGATTAATGGTAATTTGATGGTTACAGTATCTGTCATAGTGGTATCTTTTAACTTTGTTG
TAGGATCAGAAGTCAGCTTTAGAATAAAAGTAGGAAGGGATTGGACTGGAGAGAAACCAT
TGCAACATTTAGTTTGGATAAGACGAATTATGATATAGGCTAATGACTAAATGATCAATT
ACATATGAGAGAGAAATCAATAAAACTTTATGACAAGGAAACCTTTAAGCGAACAACCTA
AGAATATCTTCACTGTCCGTATAACTTTTATAGCCGCAAGCAAAACGATAAATAGTATTC
CTTCCGATCCGTAATACTTGTCGCAGAAATACCCACAGAACACACTAAAAAAGGTATTTC
ATTCTGCTGGAATTTATTATACCAGCATTCTCATATATGAGCAGGCACGAACATTTGCAA
AAATAGGGAATGAGGAAGGATCCCATGTCATCGGGTCATCTGAGACGCTAGAGTGAGAAG
CACTCGCACAATCTGAGAAATGGGAGTACTAAGGAGGAAGTAAGCTGGCAACAAGGCAGT
ATGACAGAAGGGAGGGAAGGCGAAAGAGTAAATCCAGTAGCTGGGTGAACGCATGCCAAA
GGGAATTGAAAGCTTCTAGGGAAGGGATGACGAATCAAGACATACAGAAAAGATCCAAGA
AGCAGACTGCCATGAGAGCATGACAGGATGTAGCCAGGTGAGCAACAGTTTAGCAAAGGT
CATATAGAGAATCTTGGAGTCCTCTCTTTCCATTTGGTGCTTGTAAAAAGGGAAGTAGAA
TCTTCTACAGCAAAAATTACATTTTAGATACCTCAACTTACAGGCAGAACATAAGCTTAC
CTGATCAACCAATACATCATGATAGCGTATCAGACCAGCCGGTCATCCTATGCATTGTGC
AAAAAGTTCAGCTCGACCATGTTCCCCGCCAACATCTGTATCCAGAAGGATAAGAAGTCA
AATAATCAATGATATTCCAAAAAAAACAAGCAGATATGAGAAGGCATCAAGGAGATATTC
AGATAAACCTATGGGTATAGTTTTAGGAAGGAAAAATAATCACAGGGTTGAAAACTGAAA
CAACATTAGGAATGAAGAACGTGCAGCCTCAGACTATTGGCTAGTCTGAAATTATTTTAA
GCTTCTTTCACACCATATCAAACACAATAAATATGCTCACACTATAAATCCTAGAATCAG
AAGTGATCATGACAGCTCAGATCAAGATTATCTGTAAATGAATATAGGCTGAAAATATGA
AATGAACTCAGCTTTTCAAAATACTGGTGCCAATGGACTTGCCACTCATAGCAGGACTCT
CCTCTAAGTGATAAAATGAACAATTGTTTCATACAGTTTAAACCAAGTCACTGTTATGGA
TGTATGGATATTAAAAGATCAGCAGGGATAAGAATATAAAATGACAGAAATGTAACTAGC
ACTAAGCTTCCACCTGTACGGATTGAGCTATACACATTCAACATTATAGTTTTTCATGCA
GTTGTCTTCATCTTCCAACTGTTATGCATCTAGCTTGAGGAAAAAAACTGCACTGGAGCC
ATGCACTAGCACTATCATATAAAGTTCTTGCATATGTGAATAGGCAGGCCACAATAACAT
CTAGTCCAATTATTATACACATATAATTTTCTAATCTTGGTTTTAACTGTTTTGTGCTAT
GGATATTCATATGCTAAATTGGGCAGACAGAAACTCTGATAGATTTGCATCACATAGTCC
AGTGGTAGTGACAATAATAGTAATAATAATGTTAGAATGTTCGAAACAACGTTGCTACAT
AACTTTCGACAAAGAAGATACCCAACCCCCTCTGCTTCAATCACAAAAACCACGCCAGTA
GAAGAATGACAGCCCGTCACTTGGTGACATAAACTGAAGTATATACTGCTAAAAAGGATA
TATTTTCTAGCTCAGAACTAGTACTATTAAATAGAATGCCAGCACAGAAGCATCGAGATA
AAACACTATAGAGTAGTATCGCTATGTAATTTAAAGATAATGAAGGAGCAATATAAATAA
TTGATAAGACACTACTTAGAATTGTTAGCTTAGTACCAAAGGATGTGAACAACATTCAGT
CAACCGATTCTCCAAAAATAACTAGTTTTTACCATGCATGCATTGAAAAAGCATGTTATT
ACCTGCATTATAGACACTTTCGTATGGATGGTACCGAGATCCGCTGTCGGTTTTGGGTAT
TTTTTTCAACTCCAATGACTGAAGATGGAGCACATAGATGTTGTTCAATGTCGACAGGAA
CACCATATTATTTTCCTCAGCAAACGCTTCTATCATTATGTTGTCCTTCTTTGGATTCAG
GGGAAGTAATTTGGCCAGTTCAATAGTTCTTCTCAACCTCCACGGAGCAACACCATTGCA
ATCGGTGGTCCGCTCCCATAACTGCACGGTGAAGCTTGACATGTCGAGGAAACCCAGACC
ACCACTATCTGCCCTTATAAATTTGATGAAGTGATCTCTATTCACATTTGGCATCGGTAT
AACAGCTAGGCTCTGCATTTCAAAATTAAACTCAAGGATGCCTGATGAACAGGTAAGAAT
CCAGTAAATGGAATCTCCAACCAGCACAGCGGGCTGCCTAGAAACTGCTATGACAGATAG
TATCTGATCAAAGGCGGATCCACGTTCGGACTCGGATGAAATTGGTACCGAAACGAGGTT
ACCCCATACGCCGGTCTCCGACGAGTAAACACAAGCGACCGCCGATGCTATGCCGTAGTT
GCGTGCTGCTAAAAAGACTACCTGGAAGTGTTGGGCGTCCCCCGCAGCACGAAGCACCGC
CCCGTTGACGAGGGTCGTCCTCGGATCGAACCGAGGGGGATAGGATAGGCGGCGCTTGTC
GCCGGTGACGGGGTCCCAGACGACGAACTGGTGGCGCATCTCGTGGGACATGAGTACGAG
TACGAGTCCATGGCGGCAGTCGAGTAGCGTGAATCGGCTGCCGGGTTTGAACTGCAAGGA
GAAACGGCCGGGCGGGACACGGTTGGGGGGCTCCGATGTAGGTAGGAAGGAGATGGCGTG
ATGCTCATCGTCCTGGACGAAGCAGCCGAGGAGGGGAGGGCTGCGGCGGTGGTGGATGCG
GAAGCGGCGGAGGAAGCCGGGGTCGGAGGCGACGCTGCGCCAGCGCTTGCAGACGAGGGA
GGCGCGTGGGAGGGAGGATGGTTGCGGCGGGAGGCGGAGGAGGATCTCAGGGAGTAGGTT
TTCGTCCTCCAGCGGCGCCGCCGACGACGAGCGGCGGCGGCTGCTCATCTCGGCCTCAAT
GACGCGATGCGATGGGGATGTGTGCAGTGGGCTGGATGCAGGCCGTGTGAAGTGACATAG
AAGATTAGGAGAGCCCAGAACTGGGCTGGAACTGACGATCTGGAGGGCCCAGAATCTAGT
GATTTCCAGCCCAGTAGCCGGACACCCCTAAATCTATACTACTAATAAAAGATCAAACGA
AAACTTCTCTAAATACACACAACTATTACCACCATAAAAACAAACATCAATCATCACCAC
ACAATTAGTCAACAAATTACAATCTAACGGTCTTCCACCATCCATTCAATCCGACGGTGT
GCAGTTACCAAATTAACAAAGGCTGACCGTGC