morexGenes - Barley RNA-seq Database

Contig contig_50581
Source Contig contig_50581
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_50581 (8799 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_50581

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_65725	1	1939 bp	MLOC_65725.1	Available	Available	LOC_Os04g33390.1, FRAME:-2, EVALUE:0.0, 13104.m03216 protein prephenate dehydratase domain containing protein, expressed
CDS Structure of MLOC_65725

Contig Sequence (8799 bp)

>contig_50581 8799 assembly3_WGSMorex_rbca.fasta
AGCGATCTACACGGGTATGTGGATACGATCTCTCCTCTCGTAGATGCTCATCACCATGGA
TAGATCTTGTATGTGCACAGGGAACTTTTTGTTTCCCATGCAACATTCCCCAACAAAACG
TTCACAATAAAACAAATATCAATGTCTTACAAATTCTTACCATGCAGTAGGTGGTGATCG
GCATCCGACGGTGTCAATATCTCCGAAGATTGAGTAAAGCGATTACGAGGTGAATGTATG
TATACACGGTGTAGAAATATGTGGAGATTGGAAGGCTTAATATATGGTAGCAAAAGATTA
GCAATAATCCATTCAGAGTTGCAATGTTGAATAAACGCTCAACAACGATATCGTGTTGGT
TCTAGGCTAGACCGTACTAGAGACGCGACCTAGAACACTAACGAAGTCACGAGAAAGCAT
TAGTAGCAGCAATGGATGATATGAAGTAGCTCTGGCTAGCAAGATATAAGTGAAAATCGC
AATGGCAGAAAAGATAATGATGACAAATCACTGCCAAGCAGGATATGCCAAAACTCTCAC
TCCAACTTTCGTTTGGAAAATATTATGTTATTTTTTCAAGAATGCTACTGAATCAAGATT
TTTAATGCAAAAAGAATCACTCAATTCCGAGTTTGTATGGGGAGTCAAAAAATTCGAGAA
CGGACGAGGGAAATATTGGCAAACTGTGTTCGCGACCATCTGTGGGCAAAAATACCTATT
CAGAAGTCGATTTGGAGGTAACAATAATGAACCTGCTTGATGAACTATTTAGATGCGGAT
CATTGATAGCTTGAATCAGAGTACTCGTTGAGTCAAAATGGACACCCTATGAAAAAGATA
TGCTTGTTTTATTGGACACTGCGTAAAAAGGATTTCAATCTAAATTGAGATACGAGATTG
GGTCTTGGTAGATCCGAAATTTGTTCTTTTTTCGCTTTTTTCACTAACTTTTTTCTTCTC
TTTTTTTCTCTCTCTCTCACTTTTTTATATAATTTTGCTTTTATTTTTTCTCATTTTCTT
CTTCTCTCCAACAAACCAGATAAGATGCAAATTGGATAAAGCGTAGATGCGAACAACCTC
AAATATGATAATGAAAATGAAAAATTAGAGCACGTCATGAAAATTGATGGATGGTGGTGA
AAGACAACACAAGGGATGATGATGCAGCGGTTGCCTCACTAATGTGAACAGAACTCAAAA
CTCTAAAGAAAATAGACAATAAGACCAGCAACTCGATACGACGATGCAACCGATAATTCA
ACTGTGGAAGCACTCAAAGGAAAATTGCAAAGGCTCGGACTGACTTGGACATAGGATGAA
TAAATGTAATTTCTTTTGTGGATTTTTCTTGGGCAATAGGTAAGAAAAATAAATCTAATC
TAGGATAATTGGAAATTCTCAACGAGCAACCTGACAATTGATACCACTTGATAGAGGCGA
GGGTCCCGATCTATCGATGAGATGATAACTATCGGTTTCGTGGAGACGACTTTGACGATA
TGACTATGAATGTGCATGATGTTGTGCCTTAGCAATTGCTAAACCAACTCCAGGATATTT
TGACCACGTCGGAGCACGATCGACCTCACCACGAAGGTCTATTCCTGCAAGCAATCTAAG
AGCAAGCAAGAATATGATAAAAGCAATCTGAATATTGCGAATATAGATGAGTATTGATAA
GTATGGGGATCCGAAAGCGATCTTGGTCAGCTTGTTAGACATAAACGAATTGCACGAAGT
TCCAATGGCTAACTTTTAACTAGACGAATCCCAAGCAAAAAGCTATTACATTGATCTACT
TATATAGGAGCAAGGGATGGCGTCCAAGAAGGTGGGGTGACGTCCCAAGGCAGCCTAAAA
CTAAACCTCGGTCGTACAAGGCCCATGGGCCCAAGTGGAGGTGATGCAACACATACACAC
TTATAGTTTGGCTCGGATTCTATTGGAGCGTTAGATTGTTTCGTCAATATCTCCATGCTC
TGGACGAATATGAAGGTGAATCCAATTGGTTTGGAAAGCATATGAGATCTACTTTCCAAC
ACAAGTAATAGAATCAACTAATTTGGAGTCCGGATGCAATAGTTTTTGACGTTTTGAGAC
ACGTATGTCTATGCAGTCCTAATCTGAGTGAAGAACATGAAAGATTTGGACTCTATCTTC
TCTTGGGCTAAAAGTGACATGAGAGAACTTATTGAACGGCACCTAAACGCCTCTTTTTCC
CTTATCTTCATATGTGGATTTTATAAGTGTCCGATAGTTCTGTGATTAGGCATGAAATAG
GTGGTGAAGTACTTTTGTTGTGTATAGCATAAATAAATTATTGCATAGATTTTATCAGAA
ATCATCTCAAATAAATACGTATATATGATATTTATGATGATATCCAAGATAGTTATGTTC
TCATCATGGCCATTGCTCAAAATTTATTTTCGAGGACATACGTTACTCTAACCAAACAAG
AGGAGTACATACCTAGTGGGGTGCAATGAGTTGCTGGTCCACTCGGAGTAGGTTTACGTG
GTTGCTCGAGTTGCTTGTGTCTTCTCCTTGAACCATATTGTAACATCCCGCATTGTGCAT
CCGTTCCTTTACGTATTTAGTGTATTATGTAACGTATATAAGGTTGTCTGTAATGTAAGT
ATTAGACCATCCATAGTGGGAATAACATAGATGTCACCTAAGCAAAAAATATGATGTGAC
AGCTAATTAATGAGAAGAAAGAGAAATTGAGTAACATGTCTAGTTACTCATGCTATGAGT
AACATAACACATATTAAAACAAGATGAGTCCATAAGCTAATAAATGAAAGGCTCAAGGTT
ACTACCCACTATAAAGGTAGTAACTTAAACTAGTAACATATGCATGTTTCTATTTTATGT
TATTTTTCATTGTAAGTAGCCTTATAGGTAGCATCATCCATGTCAACTAAACAATTTTGA
TAAGATAGTATTGAATTAAATAAAGAAAGAGACGGTTGAGTATCACATCACGATGCCGAG
TATCATATTAAATGATGTATTACTATGTATCATGCATGACAGTAATGAACTCATATATGA
TACTAACATATAATACTATGCATTGCACGACTAGCCTAAGAGCATCTACAACAGGACTTA
GCAAATATGATCCCCAATAGATCCGCGGGCGCGTCCATTTTGTGCCCTATTTTTTCGTCT
GCACGGCCGCACTTATTTTTCTTACCTGTTCGGTCACTTACACGTGATTGATGAAGAAAA
AAAAAAGAAAAAAATGAATAAATAAAAAAGAAACGTCCTACATGACGGACTAACCGGGCA
TGTCTTAGGGGTGTCCTCATGTCGTCTTCATATTTCAAATGAATATAAGGGGTGCCAACC
AGTTCGGACGTTTTAGACATATATAAATGATCCGATTAAATTGTGTTTTTAATGAATCAT
TGACCGAACAATTTGTTTGGATAACAGATATGAGGGGTCTGATTATAGATGGTTTAAGTA
CTATCTTTTAAATACCGTCCAGAAATGTATAGCAGTTCCGACATGGTGGCCCTTTGGCGT
TTGCTGTGTGGCGAAATCGTCCACGGTAGTGGCTGCCGTTGTTGTTGCGCTGCGCGGGCG
TCGTGCAGATGACGCGTCCCTGTCTTTGGGGTCCAGCCGGTTAATTAATCAGTGATCCTT
TCGTTTTTATATCTTTTTCGGGAGTACACCTTTCGTTTTTATATCAGAAGTGATTAATTC
GTTTGGGTTTGTCCCACCAAAAACACGTGGGTGAATGACTTGTGAGTACCATATAGTACT
AGTATGTTATTTCTGGGAGTAGTTCACCCTCCTTTCTTTGAAAAGCAACCCACCACATCT
TGACCGGATCGACCCATTTTATTTACATCGTGAGAGCAACTTCAACGAGGCAACTTATTT
TGTCCGCCTCCGTGTGTTTGGATCGGTGCAGACAAAAATGATGATCCAATGCGTCGATTC
ATTGTCAAAACATATCCGTTTCGCTTCCACGACGACCCATTTTCGGTCCAAATTTAATAC
TGAAATGCGTCGGCACAGACGTGCACGCGTTTCCTCGGTGTTCGCCCTCAACCACCGCGG
TCAACATAATTTATGACGGCCGTCATCCTCGGCCCACACGTCAGCAACAGCTGTCTGCCT
TTTTTAATTCGAGCTTGCGCTGGGTTCCGCCATCTGCTTTCAGAACCCCCCCCATCCACA
TCCAGCCACCCCTCTGTTTCCTCGTCGACGACCCAGCAGCCATGGACAAGGGCGACAACC
TCGTCATCTATGCCCACGAGATGCTGCCAGAGGAGGTCGCCTACCTGCAGGCTAAGAGGG
CGATGCACCAGGCGCACGAGCGCGCCCGTGCTACGTCCGGCTTCTTCCAGAACACCCGCG
TCGTTCACCCCAACGTGCTTCTTTCAGAGGAGGCCGTCTACCTTCAAGCTAAGATGACGC
TCCGTCTGACGAGCGAGCGTGTCCGTGCTGTGCCATCGCTGACACCAGCACTACCCGCGC
CAGCACAACCTGTCCCCGCTCCGGCACAGCCCGACCTCGTCGCCGCCACCGAGGAAGCCT
AGTTTTTTTTCTTTTTCATTAATAATGTAATGCGTGGACTCTCGTCAGCCTTCGTAGCCG
GCTTTTTTAATGTTTAAATTATGCATGTTTGATGTACGTCGATAAAAATGAATTGACCCA
GTGTTGGACACATGCCTCGATCCAAACGTCGAAGCGGACTTTCGTGTTCGCCTGGTCGAC
CTAAACGAATAAAATCGCCGTCCGTTTGGGTCGGCCGTTAAAGTTGCCCTGACCATTCCA
GTTCGAAGAAAAGTTCGTGCCCATTGCAGTTCCAAGAAAAGTTCGTGCGTGCGTGTGTGC
GTATGCGTTCGAGACGACGAGGCACGAGGACGTGCAACTAACTACCAAAACAAAAGGCTA
CAAGCAAAGCCCAAGAGCGAGGACGAACGTGCCCCCGCCACCTACCACCCTCTTTGTTTT
GCCACAGCACGTCAACGTAGCCACAAATTCCTTGCAACTTTCGTTTTCGCCCGACAAGTT
GTTTCGGGACGACACAGGCAACGACATGAGTTCATGTGGAGTTTTGATTAAAAAAAAAGA
AGAGTTCATGTGGAGTGGAGTACTAGTATTCCTTCTATTTCAGTTTATAAGTCCGACACG
TGTATCTAGATAGTCAATTTAACCAACTTACTAAGAGTCATATATTATAAAAAATATATC
ATTAGAAANTTTAGATGTTCTATTTTTTAATGGTATATTTTTTATGTTAAACAATGTACT
CCCTCCCTTCCAAAATATAAGACATTTCAGATTGCACTATAAACTACATACGGATGTACA
TATACATATTTTAAAGTATAGATTCATTCATTTTGCTCCATATGTTATCCCTAAAAGGTT
TTATATTTTGGAACGAAGTGAGTATTTTATATAAGTTAAATTGACGACCTAAATATATGT
GCATGCTTTATAAACTGTGATGGAGGGAGTAGTATTCCACTGCGTATTAACTGGCTCAAA
TGGCACGATTTTACAGGTATTATGACAACAAGAACATCGAAGAACAAAACTAATTACCCC
AGCTGCCAACGAGGGAGGAGTGGGACGACATGACCACAAATTAACCGACGTCCCTACTGC
TCCACTGATTCTCCAGGGAGCTACGAGTCGGACGATGTGACGGTGGAGGAGGAGCCAGCG
GTCATGGGGGTCATGTCCATCGGGTAGCTCCCGAGCACCCGCAGGAATGACGTGAACTCC
TGGACCTCGGCCAGCGCGTTCTGCGCCCGCGGCTCCGCGAGGGAGGCCTGGAAGTCCACG
TAGAACATGTACTCGAAATGCTTTGCCGTGCCGCGGTTGGCGTCGTCCACCAGGCGGATG
GGCCGGTGGCGGTGCGGCCGGCTCTCGATCTTGGTCAGCGTGATGTCGCGGAAGGCGAAG
GCCGAGAGCACCTTGAAGAGCACGGAGGTGCCCTCCTTGTCGTGCGCGAACACGATGCTC
GTCTTGAACGGCCTGTCCGTGCGCGGCACGATGGGCTCCCTTGCCAGCATCACGAACCGG
GTCACGTTGCCGCAGTCGTCCTGTATTCCGTCGGCGAGAATCTCCATGCCGTACAGCTCG
GCGGCGCGGGACGACGCGATGGCGGCCGTGTCGCGGAGGCCGTTGGTGGCCACGTACTCG
GCGGCGCCAGCGGTGTCGTCGAAGGCCTCGCGGACGACGTTGAGGCCCATGCGGGTGATG
GTGTGCTCGCACTGCGCCAGCGCCTGCGGGTGGCTGATGACGCGGGTGATGTTCTCCTTG
CGCACGCCCGGGAGCGCGAGGAGGCAGTGGTGCACGGGGAGCTGCACCTCGCCGACGATG
TGGAGCCGGTGGCGGAGCAGGAGGTCGTAGTTACGGTGGATGCTGCCGCCGAGCGAGTTC
TCCACGGGGAGCACGGCCCGGTCCGCGATCCAGAGCTCCACGGCCTGGAACGCAACCTCG
AACTGGTCGCAGGGGATGGCGTCGCAGCCCGGGTAGGCCTTACCGGCCGCCTTCTCGCTG
TACGCGCCCGGCACGCCCTGGTACGCCACGCGCAGCTCAGAGCCGTGCATCGGCGCCGGG
GACAGGTCCGCAATCCGCAGCGGCGCCGGCAGGTTCTTGGCGGCGCCGTTAACACCGCTG
ACGGGGATCAAATCGAGCACCGCGCCGTTGGGGGCCGGCGCCGGCGCGGCGTGGCCGTTG
ACGGAGTGGGGGCCGAGCGCGGCCACCTTGCTGGAGAGGACGGCGCAGCTGCTCAGCCAC
TCGGTCCGGCCGCCGACGGCCGCGCCAAGCGAGCACCTGACGACGCGGCCGCTCCTCCCC
GGAGCGTGGACTGCCAGCCTGGGATTCTGCCCGGCGGGCGCCTTGATGAAACTCGCGGCG
GCCATGACCAGTAACGGCACCGATTAGCTAGCTGTTGGTCCGTTTCTTGGCCTGGAAATC
TGCCTGGTAGTAGAGTAGTAGTACAAACGATGCCGATAGCGCCGGGTAACTAAAAGGTAA
TTTGAGAGAAACTAAAAGAAACTAGTACTGGTAGTCGAGTAAGCTTCGATGGGGAAGCTG
AGAGGGGAAGGGGATGGTGGAAGGGGATATATAGGTGGCGATTGGTTGGTTTGTGTTGCG
GGCTTGAGCTGGAAGGAGGGAAGCGGGGTTGGTGTGGACCGTGTGGTGGCCTGGTGGGGA
CGCGTGGGGCAACGGATTCACGACTCGGGAGTCAGGACTGATACCATGGGGGGTTGGTTG
GGTCAGCGTCAAATCAAAATGTGTATCTTTTCGGGTAAATATATCGAAAGGTCTTGGCCT
GCTTCACCAACCAACTGAGCCGTCCCGAGGGGTAGAAGAAACTCAAGGAGAACGTGGCGT
GCATCCCCCCTTCCCTTGTGGTCGCGTGCGCCGGCGGCTTGTAGCCGCGCGCGCCTGCCT
CCCCTTTTCGCCGTCGTTTCTTAGATCGCCCGGCGAATCACGGCGCCAGGTGCGTGCCAA
GCACAGTGAAGACTGCTGCGCGCTGGATGCCTATCTAGATTCCTCTGCATTTTTGTCTTG
GTAGGGAGATATTTTTCTGTATTGATTTTCGACGATGAATCCCTACAACAAAACATGGCG
TGGAGTAATTGATTTACTTTTTTTAGTCTAGCATTTTTTTTCATTCTATGTATATCCAAA
CTGACATTTGGTTCATTTTTTTTTGGTGCGTCCTTTGATGCGTCCTGTGTCGGTGTTAAA
ACTGACAGATCTCGCATAGGAGGCCCGAACTGTGAGATCGGATCGAAGGTAATAGGAGAC
AAAGAACAAGGTACTTTTACTTCGGCAGCCACCGCCCTCTCCTCCTCTATTCTCCACGCT
GTCGCGTGAGGGAGCCGACGGCGAAGCCGGCTTGGCTCCCGAGGACGGCGGTGGCGGGGC
TCTTGTCGCTCCTTCCCTTCTAAGCGGTGCTCCTGGGCGGAGCGATGGGTCTGGTAGTCC
CGGCGATGGCGGCGCCCATAGTCGGCAGTTTTGGCGATCGGTGGGCAAGATCCGGTCTTC
CCATGCGTGTTGTTCGCCGTCTCCTTTGGCTCCACAAGTTCGTTGGTGGTGGTTGTCCCA
GAAAGTCATGGCCACCGCTATCGGCTAACCTTTCTCCCGCGCCTCCCCTCGCTCTCATAT
GCGTTAATGTTGATCCAACAAAAGAGCGCAAATTACCTTGTCTTCTCCTTTGTATAAACT
ACCTTGCAGATTTCATTTTAGCCCACGATACTCTTGCTCTACCATTATTATTACATCATT
CGGTCGTGCAAGTGAAAGGTAATAACGACGATATTTGGTGAGGTGATCGTGGCAAAGGAA
GCTGGTATGAACTCTTGTTGTTTTCCATTTTTGTAAATATATTTACCCCGTTTGATCTTC
ATTTAGTATATCATGAGTAAACATGTTTATGAGGACAATTAGAGATTATAGTTTCTCATA
CCATGTTTAAATAGCCAGGAGTGGATACTGATTCATCTTATGAGTTAACATGCATAAAAA
TGGTTATGATGTGGTATGGTAGTATGGTATTTCCCTGTGAGTGACTCGAGCGGCTTGACT
TGGCCCATATGCAAACATGTAGTTAATTTAAAACCTATGCAACCTTCATGATATTTAAAT
TCAGAGTGTTAATATCCTACTCTAATGATCAATGTTAACTATTCATAATGCATGATTATG
ACCGTTTTCGCTCTCTAGCTGATCTCTTCTAAATCTATTGCTAGCCTTCACCTGTACTAA
GCGGGAATGTTGCTTGTTGTTAGAGCATATATCTCCCTA