morexGenes - Barley RNA-seq Database

Contig contig_50572
Source Contig contig_50572
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_50572 (9921 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_50572

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_65718	9	2219 bp	MLOC_65718.3	Available	Available	LOC_Os01g62220.1, FRAME:+1, EVALUE:0.0, 13101.m06657 protein pentatricopeptide, putative
MLOC_65719	1	663 bp	MLOC_65719.1	Available	Available	None
MLOC_65717	1	980 bp	MLOC_65717.1	Available	Available	LOC_Os01g62210.1, FRAME:+3, EVALUE:4e-102, 13101.m06655 protein 50S ribosomal protein L17, putative, expressed
CDS Structure of MLOC_65718

CDS Structure of MLOC_65719

CDS Structure of MLOC_65717

Contig Sequence (9921 bp)

>contig_50572 9921 assembly3_WGSMorex_rbca.fasta
AAAAACATCCATTATACAAAGGTATACGATATACTGCTTAGGATACCGCGCTAAGAGACA
ATGCATTACGGAAGGCCTTAGCTGAGAGCCAACTCTAGCACGTGCTCCTAGGCACTTCGT
GAGAATGAAAGGTGGGTCATATAATAAATAAGTAATACACTTTTCTAACCAACTATTATA
CATATTAGTTATAAGATGGATTATAGGTGATATGGCATGAGCTTACAGCCGGCAGCCGGA
TCTACTATTCTAGATGCTCTTATGCTGTCACGATCATCGTCGTTCCGAACATTCTTTTTA
GGGAAGTTCTTTCCGACCTCTGTTGCGATTGCGTGTATCCACTGGCCGCCGCCCAATTAA
GGCCCACTCAGAACTTCATTTCGGGCCTGACGGGCCAGAAAGTCGGAGGGCAGCACAAAC
CTAGCAGGCGTCCAGGTCCAAGTCCGAGCAGCACCGACCGAGCACCTTCTCAAACCCCTC
AACCCTCGCCGCCGCCGCGCCGGCCGCTCAGCCCCCGCCGCCGACGCCATGGGCAAGTTC
CGCAAGCTCGGGCGCCACGCCGCGCACCGCGTGTCCATGCTCAGGTATCTCGTGCTGATC
TTCTCTCTCCGCTCGCCGCTGTGATGAATATGCGCTGCGTCGCCGTGCGGCTGATTTTCC
TTCCGGATTCGTGTGCTTCGGCAGGACGATGGTGTCGCAGCTGGTGAAGCACGAGCGCAT
CGAGACCACCGTCGCCAAGGTACGTCTGTCGATTGCTTTGCCGTGGATGTTTGCCGCACC
GGAATCTGGGTGGCTGATGTAGTGACCTTTTCTGGGTGGTTGGTGTTTCAGGCGAAGGAG
GTGCGGCGCAAGGCGGATCAGATGGTGCAGCTCGGCAAAGATGTAAACTCAACGCCATAT
CCCTAGTGCCCAACGTTTTTTCACCTGAAAACATGTGATTTCCATTGTTCTATGGAGCTG
TCTGTCTGCAACCATGGTGTAGTCAACTGCACACAAAGCTCAGAACTAGTTAATGAGTGG
GAAAAGTAATTAATTGGTTCTGTTCAGCTGTATTAGCATTCGGTTCATTTGCAGTCACTT
AGGATCGGACCTTATAACTTTCTGTTGTGTCATCATGAGGCTTACATGTCATTTTCAAGC
AGAATGAAATGTTGTCTATTTTTTAGCATAGTGCCTATCAATCTTTCCCTGCTAAAAAAT
CGTTATATTGTAGAGCCAAAGAGCTGCTCTATACATCAGGAGTCCTAATTATCATATTTT
TGTTGGTAAAACATAAGTTCCTGATGCTTTTGTATGTTCTGTTCTTGAAACTATCTCCTT
CCATATGCGACTTCAAGCGTCTTGTTATCTACCCAAGATGTTGCGTTGATTTCGTAGTCT
TATCTTCAGGTTTCAAATACTGAAACTCATGTGCTCTTGTTATCTGATCAAGATGTTTGC
ATTGATTTAGTTAACTACTACATCCAGGCTGAGTGGCTGACAATGCAGAACCTCATGTCG
TATTGATAAATCATGTAGGGTACACTGGATGCAGCAAGACGTGCTTCTGCTTTTGTTCGT
GGAGATGATGTTGTCCATAAGCTATTCACAGAGCTGGCCTACCGCTATAAGTATGTCTTT
TTAGCTAGCCATGAATCAGCTTATCTAATACAACTGGAAATCTCTTTGATTCAGGGGCTG
TTTGGATGGCAGCCCAAGGCCGCCCTTCCAAAATATTGGTCGTTGACCAGCTGGTTGGCG
TGTGTTTGGTTCACAGCCAAGTTTTCGTATCTCAGCCAATTATTTGGTCATCCCGTGGGA
TTTTGCAGCAGCATGCGGGCGAGTTCCCGGCGGCAATTTCCTTCGCCAAAATTTTGGCAC
GCCTTCGCTTTGGCAGGGCTAGCTTGGGCACCATCCAAACAGCCCTTTACTTTTCGACCT
TGCTAAGCTCCTGCATACTTAGGATTACTATTTTTCTCATAGCAAAGTAACCTTGCTAGA
CAATGGAGAGGTCTGTAGGAAGGGATATGTCGTAAATGTCCTCATATCTGTAGGAGCCAT
GTATTTTTGGAACAAAAAAACTAGAATATTGTTTATTTCGAAACAGATGATAATATCATT
TTCAAGCTGAACCTACTGATTTTTTATTTTTTATATGTTTTATATCCTAGAGATCGAGCA
GGCGGATATACAAGACTTTTGCGAACTAGGATACGAATAGGTGATGCTGCACCAATGGCA
TACATTGAGTAAGTTTCTTTGTTCATATATCCTAACATTTCCACAGCGTGATAATAGCTA
CTCTCTGTTACTCACCTTTTATTTCTGTTTGACTTTGCCTTTGTGTTTGCTTGATGTCGA
AGGTCTGACTGGTTGAGAACAAAAATATTTTCATGGCATGCTTTGTTTTAATGAAATAAG
GCGCTGCCAGGAATGTTTCCAAATCCATGGATCATCATCAACAACAACAACAATAAAGCT
TTTACTCCCAAACAAGTTGGGATAGGCTAGAGCTGAAACCCATAAGGTCTTGCAACCAAC
TCATGGTTCCAAATCCATGAATAATCTTACATTACTATGCCCAGACAATGAAATGTAGAT
TTGAAGGCTATTAACTGATCAAGAGAGCTGGTTAGTTCCGTGATAGGTCTAGAGCTCTTA
ATGCCAAGTTAGTCCAATATTCTGCTGTGTTTTCGCAAATTTTTGCCAAGATTGATGGCG
TTATACCAAAAAATTGATCCCTGGAATTTCCAGAAACCATAACTGGTTGCCTTCAGCTAT
TGCTCTTAGTTTTTGTAGATCGACGGGACTTTCCACCTTGCTTTTTCAGATGTTGTATCT
AACATGCTCCCTGTGCAGGTTTGTTGACAGAGAGAACGAACTCCGAGAGGCCAAACCTGC
AACGCCACCACCGCCTCAGCGGGTTCCACTTGATCCATGGGCCAAATCTCGTGCTAGCCA
GCAATGGGCGGGACCGAAAGTTACCGTGAACCCCAAATCAGAAGGCTTATGAGAGCACCA
TCTGCACTATGTTTCTTACTGGTGAATGAGAGTATCCATTTTGTTTGTGTAACTCAGACC
AAGCACGAGGCTTATCATGCAGGAGGATTTTTGCCAGCGTATAATTGTCAATAGAAATAA
TTCAACTTAGATCTGCTATCCCTCCAGCGTATGGGCAAGAAATGTCAGCGATGTGTTGGT
TTTTTTTTATTGCCGATGTATAATGAAATGTTTGAAGAATCACCTGGCAAATTCGGGCCT
GGATCTCATGCCTTTCGCGGCCTCCATGAAAAGTACGTATCTCGGTTAATTGCTTGCTAG
TGGTGTGTGCGCGCGCGCGCGCGCCCCAACTGCAGCTAGTGGTGTGCTTTTGTTTGGGGT
GCAAATGCCTTCTTTTCCCATACAAAATGGAGAATTTGCTGATCTGAAATCCATGTAGTA
CTATTGCAGTATTACTGTCATTTAACAGATCGCGTTGTACCCTTTTGATGCCTACTCCCT
CCGTTCCTAAATATAAGTCTTTTAAGCAATTTCACTAGATGTCTACATACAAGTTAGAAA
GAAAAAAAAGTGTCAATGATTCCATCCTATGAATCAAACGACCTACAAAGAAAAAAATCT
GACCATCCAAATCTACTGAAATTTCTTTGAATCAAATAAGCGCTCGAGCTGGAGCAAGCT
GAATCAAATAAGCCCCGCGTGCGGATCGGGCAACCACACCAAATCAAACGGCTGGAATGC
ATCAAATCAAACGGCTGTGAATGTGGTGGATTCTTGAAAATAATTCGTCGGTGAAGATTG
CCGCACGTGCTTGTCGTTTCAAAATATGCCGTAACAAGCTCTACAATTTTCAAAATCAGT
CCCTTCGTTTTACGCATCACTTGGACAAACACAAACCTAGTCCGGCCCTGCTATCTCAGC
CCAAGGAGCTGCCTCGGCATCCTCAGCACCCCCGCGCAAATCTCCCTGCACAGCGAGCGA
AGACGCACAGATCCTTCCTGCCGGCGACGGAAGTTCCAGAAATCGCATGGCGAGCTCCTC
GGATCGGCGACAGGGCCGTCCCTGACCCAGCGCATCCCGCCCCGCCCCGCCCCGCAAGCC
GCACGTAACCTGCTCGACGGAATGCGGTACCGGGACGTCGTCGCGGCGACGGCGGCCATC
GGCGCGCTCGCCCGCGCCGGCCGGCACCGAGACGCCGTGTCCCTCTTCTCCCGCGTGCTC
GCGGACGGCGTCCCGCGGCCGAACGAGTTCACCTTCGGCACCGTCCTCCGGTCGGCCACC
GCGCTGCGCGACCCGCGCGCCGGCGCGCAGCTCCACGCCTGCGCCGCAAAGTTCGGCCTC
CGCTCCGACGTCTTTGTGGGAAGCGCCCTCGTCGACCACTACGCCAAGATGGGCGCCATG
AGGGAGGCCCAGGGCGCGCTCGGGGACACCCGCGAGCCCAACGTCGTCTCCTACACCGCG
CTCATCGCCGGGTTCTTGAAGAACGGGATGCCCGAGAAGGCCCTCGGGCTGTTCCGGTGC
ATGCCGGAGAAGAACGTGGTTTCCTGGAACGCGATGATCGGCGGGTGCAGCCAGGCGGGG
CTCAGCGAGGAGGCCGTCGGCCTGTTCCGGGAGATGTGTCGAGAGGGCGTCTGGCCGAAC
GAGTTCGCGTTTCCCTGCGTGCTCACCTCTGTTGCCAACACGGGGGCGCTCGGCGTCGCT
CGAAGCGTCCATGCGTCGGCCATCAAGCACTTGGGCAAGCTCGACGTTTACATCGGCAAT
TCTCTCGTCATCTGCTATGCCAGGTGCGGTAGCTTGGAGGACAGTGTGCTGGTCTTTGCA
AGCATGGAGCAGAAGAATGTGGTCTCCTGGAACGCTCTGATCTGTGGGTATGCGCAGAAT
GGGAGAGGGGAGGAAGCTTTGGCTGCCCACAAGAGGATGATAGCAACGGGCTTGAAGGCA
AATAATGTCACCCTCCTAGGATTGCTGTTCGGTTGCAACCATGCCGGTCTGGTCGACGAG
GGCTATTCGTTGTTCAAGACAGCCCAGAGGGAGCAACCCGACACATTGAAGCCGGAGCAT
TACGCTTGTGTTGTGGATCTCTTCTCTCGTGCCAAACGATTCGACGAAGCCAAGAGGTTT
CTTGAGGACCTTCCATTTGAGCCAGGCCTTGGGTTCTGGAAGTCAATGATAGGAGGGTGC
CTGATTCACTGGAACAAGGACCTCGCCGAGAGCGTCGCCAAGCGTATTCATGCACTTGAC
CCAGAGGACACTTCTTCATACATCCTTCTCTCTAATGTTTATTTTTCAGTTGGAAACTGG
GAGAGTGCGTCAATGATCAGGAGACATATTAAGGAGAAGGGGCTCAAGAGGATCACTGGC
TGCAGCTGGATTGATGTCCAGGACAAGGCCCATGTCTTCGTCAATGGAGACTCTAGACAT
CCTCAGAGTGATGAAATTTACAAGGTGCTCGAGGTTTGCCTGGATAATGATGAAGATGAG
CATTGCCTTGCAGTATGATTGTGGAACAACACTCGACGGTAACTATGTGTTTCTTTGGTG
ACTGATGCAATGCGTACATGATAGCTAGACTGACTGGCCGAGAGTCAAATTAGTCATGTT
CATCACTCATCAGGTTAAGTAGATATTGATAGACTTTAACTTGTGCGGTAGCAGGAGAGT
ATGAGTTTTGCCTGATAAGACCAACAACGAACAGCAACTGCAGAGTACCTGGAGATCAGA
AGAAAGATGGCCAGAGATGGTTCATCTTCCAAGCAGAGGGTGGTGTTGCAAACTTGGAAC
CTTGGAAGACATGTAACTCAAAGCTTTCAGGGTGCTACTTGGTGTCAAGGTACCGAAGAT
ATTTATTTATTTTAAATGTCAAGCTGTACAGGAATGTCCGACTATAGAACTAGGAATTCT
GTGAGCAAACTACCATGTGTTAATGTGAATAAAATTCCCCTGATGCCTGGGGTGATCATG
AGAAACTGACCCTGAAGACAATGATTTTTTGGCATAAGCCTTTTTCTGAAGAGGAAATCA
AGGATGCTCTTTTTGGCATGGGTAGTAACCTAGCCCCTGGACCTGATAACATCCCTACGC
AATTTGATCAATGCTGCTGGGATCTACTTGTTGTTGGGATATAGTTAAGCATGAGATATT
TGATATTTTCTCTGCCTTTTTATAATGGTACTTTTGATGTTGAGAGACTTAACTATGGTA
TACTAACGTTGATTCCTAAGCTCAAAGGAGCTAAAAAATCAACATTTCGCCCCATCTGTT
TGCTCAGGTGTTCCTATAAATTGATCACAGAAGTCCTTGACAACAAAGTGGCATTGTTTG
TTGACAAACTCATATGTCGCCATCAGAAATACTTTTATTAAAAACAGAAACACCATGGAT
TGTGTGCTTTCCATGCATCCATGCATGAGATCCTTCATCATACCCAGGCAAGAAAAAAGT
GAAAGAATATGCCGATCTGCCAAATATTTGGGGGTCCCTGTTAATTTTACTGCACTTAGA
AATGCTGATTGTGAATTTGTGGTAACCAAATATTTGAAAAGATGTGACTCCTGGATAGGA
AATGCGGCCTCCTCAGGTGGCAGGCTGATTCTTCTTAACTCCCCTTATCCAGTATTGCCT
AACTGGCTAACTAAATGGCAATGTCCCTATTGTCCAAAACTTGCATTGAAAAGCTTGATA
AGCACAGGAGAAGGTTCTTTTGGCACAGAGGGAAGCGGAAAAAACGCTGTCACCTGGTCA
AGTGGTCCAGAGTTTGTCGATCTAAGAGTAAAGGAGGTCTGGGGGTAAAAGACCTTCGGA
AACAAAATATCATTCTCCTTGTTAAGTGGTGGTGGAAGCTTGAGAATGAGAAGGGGCTGT
GACACGATATTATTTACGCCAAATATCTGAAAAAATGCTCAATAGCCAATGTGAAGGGAA
AAAAATAATGACTCTCCTATTTGGAAATCTATCCTCAAAGTCAAATATTTATATATGGCT
GGTAGAAAAGTGGTGATTAACTCTGTAGTATTGCTAGATTGTGGAAAGATCCACTGGGCG
ACAACCTACCCCTTTGTGACAAATTTCCTCTTCTCTTCAGCATGTGTAACCTACCTGATG
ATACTGTGGCTCAATGTTGATCGGTTCCGATAAACAATCTTCTTAGACATAGACTGAATC
CTGATCTTAACAATCAGTGAATGAGATTATAGATTCTCTTGACAAACTGAACCTATCAAA
TTAACCTGACCGTATTATTTGGACTTTGGTTGCTAAGAAGATCTTTACTACTAAGCCTAT
GTATGAGTATTTGGAAAATAATTTAGCTGGATGTGGCTACAGATGGATCTGGAGGCTCAG
AAAATCCAAATATTTCTTTGGCAGCTTTTCCAGGACGCTGTCCTTACTAGAGATGTGATG
AAACGAAAAAATTGGGCTGGTAATCCTAAATGTTCTTTTTGTTGTGAAAGAGAGGCATCA
CAGCATCTTCTCTTCTTGTGCCCTGTTGCCAGAGTTGCTTGCCGTACCATGGGGTCGGTC
TTCGGTACTGATCTTTGCCCTAACAACATTTGGCAATTTTTCTCATGGAGTTACTTGTGT
TCTTTCCTGAGGAGAAAAATAATGCTGTTTGGTTGACTGCAGTTTGCTGGGCGGTTTGCA
AGTGTCTTAAATCGTGCCACCTTTGAGTTCAAACATCCAAAGACTCCTTTTGAAGTTGAT
TTTGCGGCCTGTGTTTCATTGTCGTCATGGACAGGTTTACAGAAGATGGAGAAACCAAGG
CACATTGGAGGGTGGAGCGATGATGCTGAAGGAAAATGCCACGAACATGATGAGGATCTG
TGTGGCTGCACAGAAAAGACATAGAGATGAAATGATGCTGATCAAATTGGACACCTTCCT
GTGTCCTGAAGCTCTTCTATTCTGTGGCTGCATTTCGCCGTTATGTCTGTAGTCTGCATG
TATATACTTATACTGTGCTCATGCGTGAGCGGTGTTTGAAACTTGTGTTTAGGGTAGCCT
TTGCTGGTGCCACCGGGTTTTCGCCCCGTGGCAGATGCCTCGACTGTGAGCATTTGCAGT
CGGTTTTCCGAAGTGGTGCTTTGAACTTGCTTCTTTCTTCTCCAATCTCCTGAAACTTTC
TCAGATTGGCTTTTATATTTACGTTATGCTTATAATGGAAAAGGGATTAGCCCGGTTCAG
AAAAATGTGCTAGTGCGGATAAGGAAATAGTTCGTGCCAAACTCATTGCAGAGTAGCCCA
TTAACCAGGTGATAACGTTTTCTACCCTTCCCTCTGTGCCAAAAAATACACCGATCTGTA
GCACTAGCTTAGACATTTTAGCACTGAGTTGGATTGTGTGAACAACTACTAGAAATACGG
CTGGCCTTTTGAATTCTTAGAATGAGTTGAAACTTGCAAGTTGCAATGAGATCTTGCCCC
TGAAACAAAAGAACAGTAAATAAGTGACCATATCTGCTCAAATAAAATATTTCCATCCAT
ACAACACCATCCGTAGCCTGTACACCTCCCTTCCTCAGTTGGCAGCAAATCATCTCATCA
CAAGAATTGAACAGAAAACCAAGCATATGCAGCTAATTGCTAGAATTAAATCAAGGCCTA
CATAAACGGTGTATTCAACGAAATCTTCAAAGGCAGAAGCACAAGGTTCAGAACAAAAAT
TACTCTAGCAGATAGCAGAGTTAAATTCAAACAACTGGCATCTTCAGAACTGAGACTTCC
TAGAACACGGCGGTTGCTGATTGGTTTCAAGCTGTCGATGGTTTTATTTTTCATACTGTT
GGACTAGAGAACAATGTGTTAACAGGGATGGGAAAATAAAAAAATTGCTCAAACAAAACT
CATTGCAGTGCAGCACATTAAGCTACTGTGGCAATAAAAAATATCATCCATGTTCCTCTG
GAAGTAGACATTTTAGCACTGGGTTGGATTATGTGTAGAATCACTAGAATACGGCTGGCT
TTCTGGATTTTAGAATGAGTAAACTGTGTTAAAGCTCGGACATGAGATCTTGCCCCTGAA
AACAAATTCATTATGAAGTTACCCAATCTGATCAAATAAAAACTTTCCATCCTTCATCAT
TACGTCTCCTGTCATCTGATCAAAATAATTCAACAGGAAAAATACGCATGTACAGCATGA
CGCTGGATTTAAACCAAGACATCCGTCCATGCAGAATTCAACAAAATCGTCAAAGAAGAA
GCACAAGGTTCAGAACAAACAAACAGCTGACATCTTCAGAAGTGAAGAAAGGCACGTTTG
AAACTAACTAGAATATAGCTGGCGTTCTAAAATTCTTTAGAATGTGTTAAAAGCTTGCAA
TGAAATGTTGCCCTGAAAACAAAATTCAGTAACTACTTACCAAATCTGATCAGATAAAAA
CTTCCATCGGTACAGCAATGTGTATTCGGTACATCTCCTGACTTCAGTTGGCAGCCAATC
ATCTAATCAAAAGAATTTGTACAGCATGCCGATAGAATTGGATCAAGACCTACCTCTGAC
AGTTTTACTGAATTTTGTTTTCAGCGGCAATGTTTCATTGCGAGCCAAACAACAAATCAG
ATGAAATAATGAAGACCTACGCCAACAATTTACTCATCCGTGGATGAACAGGGAGATGCA
GAAGCCTCAGCCCAAGAAAAATGCTTGAGCACATCACAAGATTTATAAGAATTAGAACCG
ACATCATCATAAAACTGAAGCAGAACACGATTGAAACAACCACTGGATGATTCATCGATT
CAGAAAATCCGACTCATTTTACACTGTTTGTATAGGGGAACCAAACCCCCTTTGATTGTT
GACGCACGAACAAACGGGACCAAACTAACAAGAGGCTCGGCGGCGGCACGCAATCTAAGA
GGAGGTGAACTTGGTGACGGCCTTTGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCGCC
GGGGAGGACGAGGCGGACGGA