| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
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Predicted Genes from contig_50542
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_65700 |
2 |
2480 bp |
MLOC_65700.1 |
Available |
Available |
LOC_Os03g08360.1, FRAME:+3, EVALUE:0.0, 13103.m00960 protein 3-ketoacyl-CoA synthase 10, putative, expressed |
| MLOC_65749 |
4 |
2495 bp |
MLOC_65749.2 |
Available |
Available |
LOC_Os06g13810.1, FRAME:+2, EVALUE:0.0, 13106.m01523 protein pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta, putative, expressed |
| MLOC_65712 |
5 |
2746 bp |
MLOC_65712.2 |
Available |
Available |
LOC_Os11g19100.3, FRAME:+1, EVALUE:2e-53, 13111.m01933 protein retrotransposon protein, putative, unclassified |
CDS Structure of MLOC_65700
CDS Structure of MLOC_65749
CDS Structure of MLOC_65712
Contig Sequence (6664 bp)
>contig_50542 6664 assembly3_WGSMorex_rbca.fasta
GCAGGCGTGTAGGCTTTTGGTTTGATCCAGCCACTCGGTGCCATATCCTTCTTCGGCTGC
CAGTACTTTCGTCCATCTATTGTTGATGGTATCATGTTCGGCTTGGAGCCGTTGTTGCTT
CACTTGGAGGCTGCGGGCGGTGGCTATGAGCTGTTTCCTAAACCATTCCTGTCCCTCAGG
GTCCTCGAGAACTGTGAAGTCCTCGGCCTCTAGGCTGTCTTCCGCTTCGTTAGAGAGGAG
GTAGTTGCCGTCGTCTGAATCGTTGGTGTCATCGGGCTCGGACTGACCCTCGGGCTTGTT
CGGGTCCTCCGGTGGCTGCTCGGGAGCTTCGAGGTTGTCGTGGTCCTCCAGGGTTAGATT
ATCCCGGTGCCTTGTATGGAGACCCTTCACTTATTCGCCTTGGCACACTTACGCTACCTT
CGGTGCTTTGACGGCTCCTCCCAGGACTTATCACCGTTTTGTTTGGGGGTATGATCGCAT
TGTTGTCGGGTGTGTCCATCATGTAGACGTCATAGGTGGAGGTGGCAGTCCACCGCCCGG
TATTTACAGGGGCGGGGTCATCGGCCTCATCGTCCATGTCTTCAACCTCATCGGAGACGA
AATCCAACATGTCGGTTAAGTCTTCGATGGTGGCTACCAAGTGGGTGGTGGGTGGGCCGT
TAAAGTCCTCATAATTCGCGTCTGGACTGATCCGACTATAGGTCGGGCTCAGGCCGCCCG
CGATTTTCAACGACTGGATCCGGTCGAGCGTCTCGTTTAACATCAAGAGACCGTCCTGAT
CGATCTCTTGATGGTTTTCGGAGTTGACCTCCGCAGCTTCCGTGAGGCGTGCGTGTTCGG
CAATGGCTATTTGCTGTTGCACGGGCACTGAGGTCGGATCTGAGCTCAAAGCCGATTCTC
CGACAAAGAGGGAACCAAGGTCATATCAAGGGCAGCGACACACATCTTCCTTTCAAAAAA
TTCGTCATGCGAGTACCTCTCGGCAAGCCTTAGTAGGAACAGGATGAATTTATAATAACT
ATCCAGAAACTCAACCGTAGTAGGAACGGGTGGGATGTCCTTCCTATGGATCTTATCATT
GCGCAAGTGCCAAATCTGCCATATTAACATGATCAGCATATCATGATCTTCATTGGAGGA
TGTATTGGGCAAGTGCATGAACCACTCCTTCCCATTATCAATGAGAAGGTCATCACCTGG
GAGAGGCCTCCTCCTTCGCATATTCACCCAAAGGATGCGAGCCGGCAAACATGAGATCAA
CGCATTGAAAGTGCTCTCCTCTTCTACACCGCATAAAGGGCATGTTGATCGCGTAGAGAG
GTGCATGTACCTCTTGCACTGTTGTGTAGGTAGCGTCCCGGTCACCACCTTCCAAGCAGC
GATCTTCATCTTCTGAGGAACATCCGACTTCTAAACACAATTCCATAGTGTGCGACAGCC
ATCCAGATTAGAGCCTGATGCATCCGTTGAGTAGTTCAAGTTATGATCTTGTGTGGCTAA
TTAATATGCTTTTCGTCGTGAACGCACCACCCTCCTCCGGAAACAAAGATAGAAAATCAC
ATCGCTCTCGAGGTGAAGTTCTGATTTTGATGTGATCCCCATCCATCGACCAGAAGAAAC
GAAGAAACTACTAATACAATTTCTTGTATAGAACAGTAAAAATAGTAGCTAGAGCATCCA
TCTAACATATTGTTCTTTCAAGTTTCAACGGCCAGACACTTTTTTTGGTGTCACAGGCAG
ACTCCAAATGCAAAACGCATGGAGCTGAAGCGTGCCACTGCCACACACAAGAACGCAATT
ACCCTGCACATTTTCCTCCCCTGAACCGTTGCTCTTGCACATGTTGCCGCAAAAGCTAAG
CTGATCCATCAGTGCTGTGCCCTCCGGGACAACATGTCAGCCTCACAGCAAGAGAGGTAG
AGATCATGCATGTGTGTCCATGACCAATTGACCATGCATGGATGAACGAGTCTGAAGTGA
ACACCATGCCCCCAAGCAAGCAAGCGAGCTTCTCTTCCCTCTCTAGCCTGGCTTGGCTTG
GCTTGTGCTCCCCCTAATGGCATTAACTGCCACCCAACAACCCGCTCACCCACCACCTCC
TCCCCAACCCCAGCACCCAGCAGCAACCCCCTCCTCTATATCTAAACACTGAGCACTCCA
CTCCCTCTCACCCTCATCACCACCGCCCACCAGTCCCGCCCGCCAGGCCGCCACCCAGCT
GCGCCCAGCCATGGCGCGGGAGGAGCTGTCGACGGAGATCGTGAACCGCGGCGTGGAGCC
GTCGGGCCCGGACGCCGGGTCGCCGACCTTCTCGGTGCGCGTGCGCCGCCGGCTGCCGGA
CTTCCTGCAGTCGGTGAACCTCAAGTACGTGCGGCTCGGGTACCACTACCTGCTGAGCCA
CGGCGTGTACCTGGCCACCATCCCGGTGATCGTGCTGGTGTGCGGCGCCGAGGTGGGCAG
CCTCAGCCGCGACGAGCTGTGGCGCAAGGTGTGGGACGAGGCTACCTACGACCTCGCCAC
CGTGCTCGCCTTCCTCGCCGTCCTCGCCTTCACCATCTCCGTCTACATCATGTCCCGCCC
CAGGCCCATCTACCTCATCGACTTCGCCACTTACAAGCCCGCCGACGAACTCAAGGTACT
AAAAGTCCCATCCATCTCCTCGTGCTTAGTTAATTACATGCTTAATTACATACTTCCTCC
GTTTTCAAATATATATTAAAAAAAAGTTTCATCCATTTATTTTAATTTGTATATAGTCTA
TTAGTAAAATCTCTAAAAAACTTATAATAGTATTTAGGAACAGAGAGGGAGTAGATTAGA
TCAGATCACTATATCTATTTGCATGAAAGCATTTGCCATACCCGTACATATGATAATGTC
GATCTAAATCGTTTAGTAGAACTCCCGCGTCTCAAAATAAATGTTTCAACTTTGATACAA
CTTTATATTAGAGCTAGTATAAAGTTAAGATAATTATTTTAAGATTGATGGAGTATATAT
CACAAGTGAACTTGTATATTTTCGGTATGATTTTTTGTGTTACGTACGGTTAATTTAATT
CCACACACGAAATGTTGGTGACATTTTATATATTTAAGAAAGTTGAGATGGAGCTGCCAA
AAAAGGTAAATGATCCAGGTGAAAGAAATGTTTGGAAGTAGATATGGATATGTTGTGATT
GTCTTGCTGGGCGATTCTCGTGAGGTCGACATGTATAATTGCACAAGTCACGTTTGGCAC
ACACGAATTTTGTGTGAGACATAGGTCCAACCCTCTGGAATTCGTTCGCGTACCAATCTA
GCTATCTTCTGAACTGGACCTCGCTAGATAACATGAATGGGACTAGCATGCATGTCTCGA
ATCCGAGATACATTTATTTAGCTCCTTTTTATATTATAGAAATAGAAATATTGTGCCACT
TGCTTGGAAGAATGCAAAGCGGTATGCAGCTGTGATAATCAAACACCATGAAATGTTAAG
GGTAAAAATATCTTAACAACTCAGTGTGAAAAAAGCCCTCAAAAAGAAAGTCAGAGTCCA
AAAGATAATTAACACGGTACTAATTGTTACTTTCTTCGTCTTAAAATAAGTGATTTAAAA
GTGACTCAATTTTGCACTAAAACAGTGTAAAGTTGAGTCATTTTTGAATGACTTATTTTG
GGACAGAGGGAGTAGAATTTAGGGTTTATGGTCACTAATCTGGTTCCTGGAGTAGTAAAA
TTTGAAGGCAATTTAACCGTGAGCCCCTAAAATTCATCCAAAAGCTGTCATTCCAAAGCA
GGTAGTACAAAAAAGTTACTGTCATGTTTGGTAAAGTAGACAACAAACTAGCCAACAAAG
TACATACACAAGCACGTAGCTAGCTGATTGAATACGCCTTTTTCAACTTTTCTGTTAGGC
AACTATACTACTGTTCTACATTTTGTCATACGGTTATATATACCAGAAGGTCAAGGAAGT
GTAGCTAGTGGCTCAATGAGAAATTTGTCAAGCAAATGAAATTACTCCCATGATCCATCC
ATCCATCCATCCCTATGGCCTCCCGTACCCGTACCTGCCCCTGTCCCTCCATTAATACGC
TCCCACTTCTGTCCAGCTGCCACCAATCAGACGAGCCATCAATGTTGCGTTAACTCTGCG
TACATACAGAGTATAGTGGGAGCAGTAATACTGCTGGCGAGTATGGCGATCGGGTCAATC
GGTCAGCGTATGGTATTGGACGACCGTTTTTTTTTTTTTTTTTTTTGAATCTACGACCGT
ACGTGTATGGCTTGGCATTTAACTGGGCCCGGCTGGCCCTTGTGAACGAATGAATGGATG
AGCTGGGGCGGCCCGGAAGTTATGACTGACGATGGATGGATCGCCATCGAGAGCAGGTAG
AGGGAGGTTTCGGCTGGGGTACGTCGGCCGGTCGTCCAATACGGTTGGCTGGCAGATCCC
GCACACACGCACATTCAATGACCCGCCCACGAAACAAAGATTTTTTCTCTCTCGTTTCTT
TTGAAAATGAAGGAAAATCTTTTGAAGCAAGTTATATCAATGTGTGTCTTCTTCGCGTTG
TGATGATCTCGGCAAAGTGTAGTGCAAGATGAAGATGAAAAAAAGATGCAGACAAAGAGG
TTCATGCATGGTGAATGAAATGGAGAATGTAATGTCGTTTGCTTGATGATGGTGGCTGCA
GGTCTCCAAGGCGGAGTTCATCGATCTGGCGCGCAAGTCGGGCAAGTTCGACGAGGAGAG
CCTTGCGTTCCAGGCGCGGCTGCTGGCCAAGTCCGGCATCGGGGACGAGTCCTACATGCC
GCGCTGCGTCTTCCAGCCCGACGCCAACTGCGCCACCATGAAGGAAGGCCGCGCCGAGGC
CTCCGCCGCCATGTTCGCCGCGCTCGACGAGCTCTTCGACAAGTGCCGCGTCCGCCCCAA
GGACGTCGGCGTCCTCGTCGTCAACTGCAGCCTCTTCAACCCCACGCCCTCGCTCTCCGC
CATGATCGTCAACCACTACAAGATGCGCGGCAACATCCTCAGCTACAACCTCGGCGGCAT
GGGCTGCAGCGCCGGGGTCATCTCCATCGACCTCGCCCGCGACATGCTCCAGGCCAGCGG
CGCCGGGCTCGCCGTCGTCGTCAGCACCGAGGCGGTGTCCTTCACCTGGTACGCCGGGAA
GCGCCGCTCCATGCTCATCCCCAACGCCTTCTTCCGCGCGGGCGCGGCCGCCGTGCTGCT
GTCCAACCGCCGCAGGGACTTCCGCCGCGCCAAGTACCAGCTGGAGCACGTGGTGCGCAC
GCACAAGGGCGCCGACGACCGCGCCTTCCGGTCCGTGTACCAGGAGGAGGACGAGCAGCG
GATCAAGGGCCTGTCCATCAGCCGCGACCTGGTGGAGGTGGGCGGCCACGCGCTCAAGAC
CAACATCACCACCCTGGGCCCGCTGGTGCTCCCCTTCTCGGAGCAACTGCTCTTCTTCGC
CGGCGTGCTGTTCCGCCACCTGTACCCGTCCAAGACGTCCACCCCGCCGCCGCCGGCCGC
CAACGGGGACCCCTCGGCCGCCGCGCCCTACATCCCGGACTTCAAGCGCGCGTTCGAGCA
CTTCTGCATGCACGCGGCCAGCCGCGACGTGCTGGAGCACCTGCAGCGCAACCTGGGGCT
CCGCGACGCCGACCTGGAGGCCTCCCGCGCCGCGCTGCACCGCTTCGGCAACACCTCCAG
CAGCAGCATCTGGTACGAGCTGGCATACCTGGAGGCCAAGGGTCGCGTCCGCCGCGGTGA
CCGCGTGTGGCAGCTCGCCTTCGGCTCCGTTCAAGTGCAACAGCGCCGTGTGGCGCGCCG
TCGGACGCGTGCGCCGCCCGTCCAGGAGCCCCTGGCTGGACTGCATCGACCAGTACCCGG
CGCGCATGGACGCCTGAGGCCTGACCGATCGAGACAAGCAGGCGCATGCACCATGCAGGT
GCTAATAATTAAGCGAGACACGTCGCCGCATCCGCGTGGGTAAGTGCAGGCTAATGGATT
TGCATGTAACTGCATGCAGTGCCGCTGGTTAAGGTTTGAGCTTTGGTTAATTTGTGCTGG
TGTTGTAGCAGTTGTCATCATTATTAAGGGTTTTAATCATAGACTACGTACGTACGTACC
ATAATGCGCAAGTGTATGTGCGCGCTCTTGTGTGAAACTTATGTCAACTTTGATTATCTA
CGTGCAATTTCATTACTTTGGACTTTGGGCTACGGTTTAAGACTTTATAATTATATAAGT
TGGATGTGCCTTATGGATGGTATACTCGTATGTAAATCATCTACTGTACTAGATACTTAC
AAGTTATTACAGCTGTTTTGAACATATCACGGCATATGTTGCTTCCATGTCACTTTAAAC
TTGTCCAAAGTCCAGTCCAGTTGCGAGTGCTTGCCCACACTTGTATCCAGTGGGGGAGGA
TGCGCAAAAGTTGAGGTAGGGCGGGGTTTGGTCGCTCGCAATCAGAAAACATCATCATGC
CGATGGGTTGCCTTGCGCCCAGCCTGCACCGGACAAATTATGCGTTGCCTTGCGCCCAGC
CTGCACCGGACAAATCTAGTACTAGCAAAAGGGCCCATGCATTGCAACGGGAGAAAGAAA
TACCACACGGCACACGTTCTTAATTTATAAAAAATGTCTATAATTTGAGAATTTATAGTT
ACGA
