Contig Data
morexGenes
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Map Locations of contig_50489 (5228 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_50489

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_65661 1 1271 bp AK251551.1 Available Available None
MLOC_65658 1 931 bp AK376466 Available Available None
MLOC_65660 1 417 bp None Available Available None
MLOC_65659 1 426 bp AK376466 Not available Available None





CDS Structure of MLOC_65661






CDS Structure of MLOC_65658






CDS Structure of MLOC_65660






CDS Structure of MLOC_65659






Contig Sequence (5228 bp)

>contig_50489 5228 assembly3_WGSMorex_rbca.fasta
AATAAACGATTATCACAAACAAAGAATGTAATAATAGTCAATTTATTATTGCCTCTAGGG
CATATTTCCAACAGTTGCATGTATGACGCCATGATCGATCCAAACACATTGGCACAAGAG
TGTGACGACATGTAAGAGCCCACAGATCACGATGTTGTGACCCAGCCGAACACAACTCGT
ACCGTCCGGGAACAATTGTATGGGGTAATAATGCATGAATTACAGTCTCCACAACAATTC
ACGATAATCATATATCTAATACACATATGTACCTTCAAATTATTGAAACAATCATCTATA
TTTTCAAACTTTAACATCGAGATCGTCATGTAGCTACGATCTTGCATGCGATACCCCGGG
CAATGTCTAAACAGATACAAGGTTAGAGCTGTTCTATCCAATTTTTATGAAGCATTTGAG
CATACATTCTACATCTAGGAAATGTAAGACCAGGTAAATGTGTGAAGAAGAGACAGAGGT
GGGTTGACTAAGCATAGGAAGATAAAACGATAGCAGTGATAGTATTAAGTTTATATTGAT
GCAACATGTGTTTGTAATTTTGCAAATTATGTCATGGTGTTTCTAACATGACTTGCCTAC
GATTCGAGGATCCAAAATCCTAATGACAACTACCGCGTTCTCATAACCATTCCTAAAAGG
GGAGCCACCCCTATTTATAATTTCAACAACATTGATAGATTTGTGCCAAGTAGCAACCAT
CAAACACTACAACAACAAATATCTCTGTTGTGAAATTTCGAAGTAATAGTAGATAATTAT
TACACATGAATTAAGATATTTTAAATAAAATCAAAATCTTAGAGTTGTGGGTAATAGCTG
TATCTACTAGGGTTCCAATCATGATGCTCATGTTTTCACACATCTCATATGTTTGATAAA
AAATAGTAAAATGTGTGGGGGGAAATTGCAGTCCATGTGGGCGCATCATAGTAATGTATA
ATTGTGTCTCCTTGTAATCATAATTTTGAGCCTAACTTTGACAAAAAAAAATTGACTAAT
AAATTATGAATTTTATCTCACAAAATATTTCATTGAAAACTTCGTTCAAATATGAATTCA
ATGATAACTCTTAGTGATGCAAGCAAGTGGCAGCTTGATTCGTCCCGTCACACTTATCAA
TCAATTCCAATTTGCTCATCACTTGCCTCAGTTAACACCACATTTGTCATATGTTATTAT
CTGCTAGCCCATTCCGGTTGCATCCCCAACTCATACTCCCTCTGTTTTAAAATATAAGTC
TTTCTAGAAGTTTACCATGAACTACATTTGAATGTATATATATGTATATATAATTTATAG
TATAGATTCATTTATTTTGTTTTGTATGTAGTTTCTAGTAAAATCGTTAAAAACACTTAT
ATTTACGAACGGAGGGAGTACAATGTTAGGCTTAAAATTGGAGACCAAGACTGAAAAAGA
AAACACTTCTAGAACGTTTCTCATAAATTAAAGTGAGGAGTGATAAACGAACAGCAGTCT
CTGAAATTCGTCAATCGACATCTGGCCAGTTCCATCGAACAATTCTTTTTATCAGGTCAA
ACGCGGCCATTCGTGCGCGCCATCATCGGTTATCACTCCTATTTTTGCCTTGTTTTCCGG
CCGTTTCATGAAGACTAATTAAGCCAAGCCGTGGAGGAAACTGTTGGATCCCTACAAAGC
CGCATCGCCTCCAGCCAACCCACCGTTCCCTCCATGCATGCCACCATTCTCCCCACCCAT
TCCCGCCGTGACGCCGTAGCGGCGCCTGCATGATCGAGCGCGCGCGCAACCAAGAGCAAC
TAGCTAGCGCACCGGGCTTTGTCCGGCCGGCCGGCGATGGGGTGCACCAGCTCGGTAGAG
GCGCGGCGCGACATGCGCTGGGTGGAGGCGGCGGCCGCCGACCCGCGCGCCAGGCGGAGC
TTCTCGCTGTCGTCCGCCGACCGGCAGCGGCTGCGGGCCAAGGCCGCGTCCGTGCTGGGC
AACCTCGGCCTCGCCCCGGGCCGGCGATCCGGCGCGTGGTCGAGGAAGTACACCACCCTG
TCCGTTGAGGAGATCATGGTGAAGTTCGAGAACGACCGCGCCTTGCGGGAGGTGCTCGGC
CGTCTCAAGGAGACGGCGGCGGCGGCGGCGAGCCGGGATGCCGTCGGCGGGCCTAGGACA
AGCACGCCGACGCTGACGCCGCCCAACGACCCGGAGGTGATCAATGCGTGGGAGCTCATG
GCCGGGCTCGAGGACCAGGCGCCCACGCCGCGGGCAGCGCACCATCAGCCACCACCGCCG
ACGACCCCGCCGTGGATGCTGGCCGACCAGGACGTGCCCCTCGCCTTCGAGTTTGACCCG
CAGATACTGTCCAGCTTCCGCGAGGCCCTCGCGCAGGACACGTCGCCGTCGCAGAAGCCG
GACACGGCTAGCTCGCCCACGGACAAGGAGGAATCGCCGTCGCGGCAACAGGCGAAGGTC
GGCGACGACGCAAGCGCAGGCACGCCGGTCTCGCCGCCCACCAGGGACACCGCGAGCTCA
CCGGCGGACAAGGAGAAGGAGGAACCTGCGTCGCAGAAGGATAAGAAGGACGGCGCCGAC
GCAAGCGCGTGCACGCCGGTCTCGCCGCCCGCCAGGGACATGCCAGAGCTCTCCGGCATC
GTGCGCGCGCGCATCAACGCATTCCAAGAGAAGATCCTAGAGCGGAGGACGAGCAACGGC
GCCCGCGAGGCCAAGGTGTTGGGGCCGCCGGGCGGCAAGCGGAAGGCGGTGGTGTACTTC
ACCAGCCTCCGCGGCGTGCGCAAGACGTTCGTGGACGGCTGCGCCGTGCGCAGCATCCTG
CGGTGCTACGGCGTGCGCGTGGACGAGCGCGACGTGTCCATGCACGCCGCCTTCAAGTCC
GAGCTCGCGCAGCTCCTCACCGGCCCCAGCGCCGCCGCCACGCTCCCTCGCGTGTTCGTC
GACGGGCGGTACCTCGGCGGCGCCGAGGACGTGCAGGCGCTGCACGAGGCCGGCGAGCTC
TCGCGCGCGCTGGAGGGGTGCGACGCCGCGCCCGTGCGCAAGCTCGGGTGCATGGAGGCG
TGCTCGGCCTGCGGCGACGTCCGGTTCGTGCCCTGCGAGACGTGCTACGGCAGCTGCAAG
ATCTTCGTCGAGGACGAGGAGGAGGACGACGACGGCGAGTTCCGGCGATGCCCCGACTGC
AACGAGAACGGCCTCATCGGATGCCCCGTCTGCTGCTGCTGATGCTCTGTTTTTTTGGTT
ACAGTCTACCGTAGGCTAAAGTTCTCCTACTGTTTTAGTTGCTTCTACTTTGTACAGTGT
GAAGAGCATTTACACAAGGATTTTATCGGGCAAGAGGTTTTGCTTAGGCTCCTAATAACT
TCCTCCCTCCCTAATAAGTTCTGTTGTAGATCGATGAGGTCAATTTTTGTTGGTGAAGAG
TGAATACATACAGTCATATAAATTCAGTACCAAACTTGTGTTGATCTGATAAATTGGTTC
AGAATTTTACCTGAAGCTGCGTTAGAGATGGAAAAAAATGTCGGCCTCAACAATCAACGT
GGGCAGAACGTTCAGAAAAGAAAATGCCAACACGTCAAGACTAAAATGGATAATGAACTC
GAATGAACAAGAGTATCAGAAAAGTCAGAGACATGACTGCACGATCACCTTGACTGAATT
CTGCACATAGCTTGTTCAAACCACATTTGTTGTCTGAATAACTGACAGTTTGCTCTAGCT
ACCACAATACTGTTATTATATACTGTATCATAGATAGCACATAAATATATCATACCTTAA
GTTCGACCATGGTGTCTGAATAACCGACTTTTGTATAACCGACACAACAAACTGTTCGAA
CGGGGTGTTTATTTCCACTTAATTCTGCCTGCCATGAGCAGCCAGATTTTCAGCGGCCTT
GGCGGCGCGGGTGAGAGCCTCGGACAGCATCATAGCTCCTGCGGAGAAATAGCTGCTCGT
CACGATGGTGTTCATAACCTTGACCGCGGTTCTTCCGGTGGCAGTGGCGACGGTCTTGGT
CGTCTCGGTAACATGGTATGTCTCGTCCACTGATCTGATTGCGCCAACACCAGCACTGAC
TCTGTCAGTCAGGCCGAGCCTCCTGCTCAGCTCTGCAGCCTTTGCTGCCGCAGATCCAGA
TAACTGGTGGGACTCGTCGAAAGCTCTAGCCCTGGACAATGCGTCCTTGCTCAGTATGTA
TCCCCTCGACAGCATCGTCTTCACGACGTCCTGAGCCACTGTCAAAGCCTCCTGTGGAGT
GGCGTTGAACTGGCATGATTGGTAGTCCTGTTCCAATTGCGTTGATGAAAAATAAATGTC
AGCAAATGAAGTCACAGTGATATTCGGATTAGCTTATTTATAAAACGATAGTAATTGAAA
AGGGATGTGCTTTTCTGGTTTTGTTTCTGTTGTTACTTTTCATGTGAGGGTGTAATTTCT
TACATTTAACATAAAGACATCGATTTAGTGACTGACAGTGTCTTCTTATTTTGTTTTATC
ACTGACTCACTGTGTGACCAACACATTCCAGTGAAAATAAAAATGATCAAGCACATGAAT
TGGTAGCATGGATGATGATCATACCCTATATTCAATTTCCTCCTCGACCTGCCAAGTTGG
CCTGTCCCAGAAATTACTAGGCTCATCAGGCTGTCCCCAACGAGATATGCACACCGGCTG
ATCCACAATGGTAGCCCCCTGTCAAGATAAAAGGTGTCATCAAGGTAAAAACAGAAAGTA
CCTGTCTGCAATTTATGAGCAATATGCTGAAAAAACAGTCATCGCACTATCTGTCAACTG
ATAACAGTTACATCTTGAAGGACTTCACTAGTATAGAATCCGAACTAAACTATGTACCTG
ACATGGTTGAATGTAGGGGACTAGGGTACGAATATTTGTGTAGATAAAGATGTAAGATGT
CATTGAAGGGAAAAAAAAAGTGACTGCAATTTACAAGAGATACACTGAAAAACAGTCATC
TGGCCACTATTTGTCAAGTGATAACAGTTACATCTTTAAGCACTTCACCAGTATAGAATC
TGAGCTAAACTATGTACTTGAGATGATGGAATGTAGGGAATATTCAATATTAAGTATTAA
CAAACGCTAGAAAACAAACTATTCTCCTGGCCAAAGGAACTTAATTCACAGTGAATCAGT
AGACCCTAGAATTTTAGGAATTAATCAAAGGAATCAGACACGTCGTGATAAAAAAAAAAA
AAAAAAAA