Contig Data
morexGenes
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Map Locations of contig_50318 (8349 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_50318

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_65547 1 2297 bp AK373250 Available Available None
MLOC_65546 3 2849 bp MLOC_65546.2 Available Available LOC_Os10g35810.1, FRAME:+3, EVALUE:1e-93, 13110.m03231 protein thylakoid lumenal protein, putative, expressed





CDS Structure of MLOC_65547






CDS Structure of MLOC_65546






Contig Sequence (8349 bp)

>contig_50318 8349 assembly3_WGSMorex_rbca.fasta
TAGTTGCGCATGCTTGCGAGAGGGGGTAATCATNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTATCAAATTATCAAAGTAACTAACGTGAATCAAC
TCAACATGATGAACAGACTAGACAGTAATTCCCATGTGTCCTCGAGAGCGTTTGCTTTTT
ATAAGAGTATTTCCGGCCTGTCCTTTGCTATAAAAAGGATTGGAATACCTTGCTGCACGC
TTGCTACCATTGTTACTTGTCACTTGTTATGAATTATATTGCTATCGAACTATCTACCAC
TGTCACTTACAACACTTGCAGAGAATACATTGCCGAAAACCACTTGTCATTTCCTTNNNN
NNCTTGTTGGGTTCGACACTCTTATTTGTCGAAAGGACTATGGTTGATCCCCTATACTTG
TGGGTCATTAGTAACCGTTTTAGAAAAACATTCTCATAGCACCAAATCAGAAATCCCGTT
GTGGCACGAAATTATAGCTTCTCGTCCTGCGTCTGGTACACCTTCTTCTCATCGGGTCTT
CCGTGTACTCTTGCCATCATCACATGTAACATGTTGGCTATCTCTATGATATTGACATTA
ACGTGGCAATCTCGTGCTTCCAGCCATCATTCCGTGATTCGCATGCCACTTAAGATTACA
ACATATAACCATCTCATACATAAATTCATTATCATGACGAAGGCTATACCACATCATATG
CAAACCTTGCAAAACCAAGTTAGACGTCCTCTAATCGGTTTTAGAAAATTTTAGTTGCGT
GGTTACCAGTTTTAATAAATAATACCACGTACCTACGTCCACAATTTAGGAGATAAATCT
TGTTGCTAGATTAACTTTCGAGGTGTGTGTGAGGGAAGAGACTAAATTAAAAAATTCTAG
CCCCACACTAAACTTTGTCAAATATGCATGACCCCTCGAAGATCGTTCATCTTCACCGCC
CTCTTATATACGTGGAGGTTCACTATTCTTGACTATGGTGAGGCCCAAAGAACTGTTAGC
AGATCGTCGATAACCAGAGACGAGCTATTGTCAGAACTTTGTGAAAAGCCACATCTTGCT
GTCAATTAGCTGAACCAAAGCAACACCCAAGGGAAGCATAACAAGAACATCAAACTCTGA
CATCCACATCTGATCTAGATCGCAACTTGTATCTACTCATAGAAGGCTCATGATGCCACT
ATTGTGAAACGTAGTAAAAGACAAAAAACGCCCTACAATCAGCCAGGAAACACGATGAAG
ATATTCTAATTGTTAAGATCACAATTGATACTGTCACCAAGTTGCAACGTAAGATGAACG
TGATGATGTAGACCATACTTGGAGTCCCTTAAACCATAGATGAACGATCTCTCGAACCGC
CCACGAACGAACCCTCGAACGAAAGACCAAAAGCACGACCTCTCTACTTGGTTGCAAACG
GACAAAAACATAATAAAATGGGGAAGGGCGGCGGAAATCATCATTTTCTCGCCAGTCCCT
TCCCATTCTGGTCGTTAATGCGACTGTGCCACTCCTTCATGTAGGCGTATGTGTGTGACG
ATGCATCATCGTCGGAGCTGGAGGTGGAGCCGTATGTAAGGTCGGAGTTCGAGTTGTGGG
TTTGTCCCGATACCCTGGGAGCAGGCGGTGCCTCTCCTTTGCATGGCGTGCCGCCTTAGC
CTTCGTCGTTGCGTCCTTGTTTGCCTAGCGTTCCGACAACTCGATGGCGAGTCAGAGCAC
CTTGGCATTGTTGCAGCGGAGGCGCCACACATTCTTCTTTTCCGTCACGAGAGAGCAGCG
GAGGACCGACGCAAGGAGCGTGACATAGGAATCGACCGACGCGCTCTTCCTCGGCCGTTG
CCGCTTGCAGCGGGCTGCTTGTGCCTCGGATTCGGGCGTCCTCATGCGTGTCGGCGCGTG
CGTGGGTAGGAGAACCCAAAAATGGTCGGGTACCACTTCCGAAACAAGCGGCGGTGGTGG
GTGGTGTACTTGAAGGACAGGAGTAGAGCGATCGGAGCTGCGAACCGGCGGGACGGGTCG
GCGCTCCATCGACTAGCGACGTGCACTGGGGAAGATGATCCGTCGACGCCGCGTTGCTCG
AGCAGTGACCGCCTCAACGCCATGTGGAGGGCAACCTCCACACCGATGGTCGAGGGGTCG
GATTCTCCGACTGAGCCAGCGCTGCTTCCGTCGCCGGGCATCGAAACGGATAGGATGCGA
TCATAACTCGAGGGAACAGAAAGGAAGTGAACTGAAGTAAGGATTGACCGGTGCCTACGG
TTTTCCAGATGTGGCTATTTGTGGGTCACGTATGGATCTGGTTGGACCAAGCCAAGCCGA
TGCGGCGAACACATCCATGCGTGACCGGGCTGCCTCATATCCGCCTTACTTGGACAGGAC
ATAAGGGACGTCGGACTGACCGAGCGTTTGAGGCCGGACTAAATTTTGATAGTCCGATGG
TATGTTAGTAGTGATTGAGTAGCCGAACAATGTGTGTAATGCATCAACGTAGTAGTTACA
TGATTTATACAAATTTAAGATATGAAATTAGAGGTGTCCTGCTGTAGAATTTGGTACATG
CTCTTAAACCATCGTTCGCCATTTTAGCTGTCTCACCGGTCAGTCACGCGGGCCCGTGGT
CGTCAAGCGGACGAGAGACGAAACCGGGATAAGCCTGGGGAGGATAAGACCATGATCCCT
CCTTCTATCTCCCCCCTTCCTCGTCACCACGCCGCGCGCGCCGCACACGTACGTACACAC
CCAACTCCTCTCTTCTCCTCTCAGCCAGGCAGACGCGGTCCCCGCATTGCATTGACATGG
TCTCGTCTTGCCTCGCCTCGCCGGCCACCGCGCGCGGCGGCTCTGCTCTACGCCTACAGC
TCCAGCCGAGGGGGTGCCGCGTCACGTGCTTGGCCGACGCGGGGGGAGCCGGGAGTGGCG
GCCGCGTCAAGGCCGTGGGAGGGTTCGCGTGCGGCTTGCTCGCAGCCTGGGCCGTCGCGT
CAGCCCCCAGCCCGGTCTTCGCCGCCGGCCAGGTTGGTGGTCTCCTCCGTCTCCACCACG
GGCATTGTGCGATTCCAATCACCTTCTTATTTCTTTTTTTTTTCTCTCGATAAAGCCCTT
CTTATTTCTTATTTCTTGAGAGGAAATTTGTAGAACCCGACGACCGCTAGTCGCTAGCGC
AAATAGACTCACGTCGCGTTTTCCTAGGATTTGGTGGTAGATGAGGGGAAGTCGCAGTTA
GGTTTCACTTTTATTCGATCAAATATACTACTAGCCAGTAGGGAAATTGCTTTCTAAATA
CTCAGTTTAACTCTCCATACAAAAGGTACTCTTGAACAACTGTTGGAGATTAGTTAAACA
ACAGTGATAATCTGAAGAAAAATTGCTAGTATTGGTTTTGCAGAAAATAATACTAGTTGT
TTAATTAAGACTGAAGGTGAAGGCTAAGAAGGGAAAATTTTCAACTGACATAGAGTACTT
TTTAGAAGGAAGGCTTAAGACGAGCCTAACTTCAAATTAACCAAGCCATCAACCAGGCAG
GGATTACATGACACCAAGCAACATCGGCTGAAAGATACAAGGGAAGGGAGCTGACTGATC
AGCTTAGAACACAAGGCACACTACAAACGAACAAACAAAGAAAAACAGAGAGAGAGAGAG
AGAGAGAGCACCAAAGAACAGACAAAAGCAGAAGAAGCTTCAAGGATCAGCTTACAGTCT
GAAAGAATGGTCAACAAGCCTGATCCACGGGATTGGATACACCCAACCCAACATACCTTC
TCTACCGCCAAAGAGAAAGCCCACCCCCCCACCCCCGCCGTCTAGGATAGAAGGCGCCAC
ACCGTCGGAGAGTAGAGGCGCTTAATTGAGAGATTGAGAGCTACAACAGATTCGGCCTCG
AACCTAGAGAAGCCATTGTACATGGCTAGCTTCACGGGGAAATGTGTGGGCGCGCCCACA
CACACACACACACACCAATCGCATCGCTGCCGCCCTTGGATGACCGAACACATTGGGAAA
ACCAACGGGAATAATTGCAGAAGAAGGAAACTGCAAAATCACGGCATAAGCGCAACGAGG
AATATCTGAGTACTGAGGCATCCACAGCGCCAACCACGTTGCTGCCACCGGAAAGTGGAC
CCTATCCCCTTCCGCCCTGGATCGAAGGTGTCACACCGCCAGGAAACAGCCAGGCTCTTG
GCCAGAGAAGAACACCACCTCAAAGATAAGTTGGGGATTTGTTGGACCTATGAACATCCA
TTGATTGGTGCAACTTGGACTCTACAACCACCGAGCGTCAGCCAACCGCATCACCACTAG
CCCAAAGAACCAAAACTTTCCCAGATGGTGCCTCCATGCAGGTCACGACGCACAAGGCGC
CGCGGCGACCCAACCCGAGGCGGGCTTTTGAGCTTTTGCCGGGGAACTGGGATGCGGGTG
GAGAAAAGAGACCTTAGTGGCGCCTCCAGGGGGAATGCAGCTCACTTGTGCATTGCTGCT
TCCATGGCCGGAGCAACTGACCAAGGGTTTCCCCCTGGTCTCAAGCCTACACAATGAACT
CCCCACTTTCTCCGTATCCGGCAACCGACGGCCGCTAACAGGCAAAGTCAGCGGGAGTGA
GCTACGTAGGAGAGGACCGTAACTTTGTGCTCTGGAGCGATAGAGAGAAAGTCCGAGTTG
CGACCACTGTCTGTCTATCGCCTGCCGCGGAGACAATGTCGGCTTGCCAGACGGGGCTGC
CGCCCTGGCAACCAGAGTCATTTCTGAAGAAATAAAGTAATGAGCATCTCACCACGACCT
TCATCGTTGTCCGCATTGGCTTGCCCGGCGACCACCTTGGGTGGCGGCAAGGGAGGAAGA
GGGTGGAGGGGGTGGAGCCGCCGGGGAAGCCCTAGTCGCCCTTGGGAGGACGACACGAGG
GCCCCCGAAGCGTCCAAGAGGTCACAACGGAGTAGTACACTTACCACAGTATGTATTGTG
CACTACTGCAATTTTGTTACTTACCAAGAGCTCTGTTGTATTTGTTACTATCTTGTACTC
CAAAAATAAGGCGTATAAGTTGTCCTAAGTAAAGGTTTTCTGTGTTTGACCAGGTTTATA
GATGAGAGTGTCAATATCTACAATACCGAGTAAATACGTTATGAAAATATATTTCATGGT
GAAACTATTGATGTTGATTTCCTATTGTAGGTATCTATATTTTTGTAAGAAACTTCGTCA
AACTGGGATTATATGTTAATTTGGGGTTGGCATTTGCATCTAGACTCAGTAACTGATACA
ACTCTAGAGAAGCAGGAAATACCTCGGTTTTAGAAATCATCGTCTTGTTGCATAATTTAA
TCAGATTAACTGATTATGGCATGGCAATTTTCAATGTAGGAATACCTTATATATTCTGAT
GTCTTTTGTAATGTGAAGCACGTTTCATAAAAAATCACTGTCATATCTGTTAGAGAAATG
CACTTCATTTTACAATCCTACAAGTTTAACCTGAATATGTACTCATCAGTTTGGCACTAT
AGTACTGTTCTTGAAAACTGCCTTCTAGCATTAGAGCTTACCTTCCTTTCTACATGGTTT
TAGGGCTTCTTTTATTCAAAGGATTTTCAAAGGAATAGTGGAGGATCAGAATCCTTAAGA
ATTATTTTTTTGTTGGTTTTTAATTCATAGGACTGAATCCCATAGGAATTTCTCTAAGGA
TCGACTACGCTACATTTTAAAGGAAAATTTTACATCCACTCCAACCTCATGTAAATAATC
TTTTGTTTTTCCTATGGTACAATCAAAGACACTTTGGTGCGGACAAAATCCAGTAGGATC
CGGGTGGGCATGCCACTGCAATCCTACGTTTTCGTTCTATATATATACACATACACATAC
ATATATATATTCTGAGATATTTTGTCGAGTAGGAAAAGTTGTCTGAGATAGCACTGTTCC
CTGTTTGCTTTGGTTGTTAGAGGTTGCCTCCACTATCAACAGATCCAAAGAGGTGCGAGG
CTGCATTTGTTGGGAACACAATTGGTCAGGCAAATGGGGTGTATGACAAGGTGCTTGATC
TCCGGTTCTGTGATTTCACAAATGATAAAAGTAATCTTAAAGGCAAGACTCTGTCTGCGG
CTTTGATGTCAGGCGCAAAGTTTGATGGTGCTGACTTGACAGAAGTTGTCATGTCCAAGG
CCTATGCTGTTGGTGCAAGTTTCAAAGGTAACAGAAACATAAGTAAACACCTTAATCGTT
TGTTACCACGGTGTATTATTCATTGTTGCATGGCTTCCAAATGCTTGACCTTTTCATATG
CACCTTTGCATTGATCATGGCTACCTTATAGGCAGGGCGTAAAATGCTTGTGTTATTCAC
CACACTAATCCTGGTTGTTGCAGTTGCTCCCAAATACTGACCATTTTCATATCTACCTTT
GTGTTTTCACATCTACCTTTGTGTTATCATGCTACAACTACAATATGAACATACAGATAA
ACACTTGTCTTTGAAATTCTTTCAGGCACGAACTTCACAAACGCAGTGATAGACCGTGCC
AATTTCGGAAAAGCCGACCTGGAAGGTGCAATTTTCAAGAACACTGTCTTGTCGGGATCA
ACCTTTGATGAGGCTAATATGAAGGATGTGGATTTCGAGGACACACTCATTGGCTACATT
GACCTTCAGAAGCTTTGCAGAAACACCAGCATCAACGAAGGCACAAGATTGGAGCTGGGA
TGCAGGTGATTCAATCACAGCTGCTGCACTTATGGTAGCATCGACGTCCATCGTCCGGTA
AAGATTAGTAAGTCAGGTCTGTTATAGAGCACGAGCAGGATGACAACCCCACCCCCACCC
CCCTCTCCGAACATATGTATACCGTAAATATCATACCACAGCTGCACTTGATCTGTGCAA
ACACAACTTACAGCAATGGAAGAACCTTATGCATTACATGTTTTTTCCCCTTTATATATA
GATAGATATCGTTCACAATTCAGCAACAGCATGCTATCACTGATGATGCATGAGCTGGAT
GGCGCATGCATGCTTTATTCCAAATCCACACATGAATTGATGAGACCCTAGTTTACTACG
GAGTATATATATGTGCGCTTGCTTGACAACATCAACATTATTCGCCTCCCCCTTGGGTTC
AGCTCCTGCATGCCATGCTCGCACGCGCACCCTAGTATGTATGACATGACCCCTACAAGG
GCCGATGCTACTCACGGACAGTGCGCAATATATGCCTAGATGCACCATCTAAAACGGCCG
GCAGCCTCGCCGGCACGGCCGGGCACCTGCCGGTGAGGTCGGTCTTTAATTGTCTTTGGC
TCGAGATGAGGTCGCGGGTGGCGCTGCTTGTTCCGGCGATCGGTTTCATTCGGTTTCGTT
GTTGCTGCCGGAGTTGTTGCCGGAGTCGATGACGCAGGTCTCCACGCCACCGGTCATCCA
GAGGAACCACGCGTAGCTGCTCCGGTGGTGGCTGCTGTCCGGCTCCTCGTCGATGGCGCC
CGTGAACATGTCCTCCGCGCCGGCCAGGTCGCCGCGGGCTTGCCAGAGGAACACCGCGTA
CCTCCGCATCGCCTCGCCGTCGGGCGGCTCTATGGCCACCGCACGCTTGAAGTAGTCCTC
CGCCCTGCAGTGGTCACCGAGGTCGATCGAGACGAGACGGCGGGTAAGGACCATGACAAA
TTAAATTAAACGGGTGCATCTTATTCTTAGCAGAATGCATGAGAATTAATCAATGTTCAA
GACCATGCACGGCGACGGCGCTATATATTTACCTGTCGAGATCCTTGTCGAACTCGTAGA
GGAGCTGCGCGTAGTTGGAGAGGATGAGCGAGTTGGCTTCGGAGGTGGCGATGATCCGCT
CGTACGCGGCCTTCCGTATGCCGGCGCGGGCGGCGTCGATGGCCTCCTGCTCGTCGTCGT
CGACGCCCAGCGGCATGTCGTCGTCTTCCTCATGATGGATGCCGATCCTGGCCCAGAGCT
CCTTCTCCACGTCCAGCCCCACCAGCATCGGCAGATCCTCCTCCGCGTCGTCTTCGCCGT
CGTCATCGTCATCGACGGCGGTGGCCTTGGCCTTGCTGGCCGACTCGTCGGCCTCCTTGG
CCCTAATCCTTTCCATCTCCATCTCCACGGCGGTGCCGAGGCAGGACGCGACGATTCCGA
GCAGTCCCACGGCGAGGTCGGGCGACTCGAAGTGTACCTTCTGGAAGACCCACGCCACGG
CATCCCCGGCGCCGCGCGCGGCTCCGGATGCTCCCCCGACCCCCGCGCCCCGCCCCCCCC
CCCCCCCCGCCGCGCGGGGCCCGACACCTCGCGCAAATGACTGTCTAACGCACTATTCTC
ACGATACAG