morexGenes - Barley RNA-seq Database

Contig contig_50306
Source Contig contig_50306
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_50306 (5999 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_50306

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_65534	10	2152 bp	MLOC_65534.7	Available	Available	LOC_Os07g09720.1, FRAME:+1, EVALUE:0.0, 13107.m00982 protein phosphoacetylglucosamine mutase, putative, expressed
CDS Structure of MLOC_65534

Contig Sequence (5999 bp)

>contig_50306 5999 assembly3_WGSMorex_rbca.fasta
TGATCATCACCATGGATAGGTCTTCCGTGTGCGTAGGATTTTTTTGTTTCCCATGCAACG
TTCCCCAACAATGGCTTCACGACGGACGCGATGCGACGGCACCCACCGCCGAGGTCGACC
GTGGCGCCATGAAAAGGCCGCGCGTGAGACCGGTGCTTGGAGGAGCACCGACGAAGGCGA
AGCCAAAGCTCTTCAAGCTAGGGTTTGCGACGACGACGACGGCGGCGGCAGCGGTGGGGT
CGCGGGTGCAGGAAGGGGTGATGAGGATGTTAGCGTGGCCGTTCATCAGGCGAATTCACC
GGCGCAAACGTGGGTGGGGCGAAAACGGCACGGCTGGAGAGTGTGCAGCGTGCAAGAGCG
AACGCATGAAATAAACAGTGTGCGATGCCATTTCATTCTGAACACTGAACCGTTTTTATC
ACGCTCGTATTTTTTACGTCTTAACTTGAGCGTTCGAAATGGCTGCGCAAAAACTGTATT
TTTCCAGAGCACGGCCCTCATATCTTGAGGGTTTTGGAGATGCTCTAAAGTGAACCATCA
ACTGATCAACATTCGGTTCACCTCTTCCGAGTCAACTTCGACTCCGACCTTCCCAGCTCC
AGTCCAACCCAGCCAGCTAGGCTCGCTGCCCCGTCGCATCCCTGCTTCCCAACGCCGTCC
AGATCCGCCCCTGCCGCCATGGCCGACCCAGGAGACGAGCAGCGCGCGGCCCTGATCGCC
GCGGCGTCTCTCTTCCCCGTGCCGGACGGCGCGACCTTCTCCTACGGGACGGCGGGGTTC
CGCGCCGACGGGAGCACCATGGCCCCCGCGGTGTGCCGCGCCGGGATCGTGGCGGCGCTG
CGCTCCGTGAAGCTGGGCGGCGCCGCCGTCGGGCTGGTCATCACGGCGTCGCACAACCCC
GTCGGCGACAACGGCGTCAAGATCGTGGACGCCGACGGCGGCATGATGTCGCAGGCCTGG
GAGCCCTTCTCCGACGCCCTCGCCAATGCCCCCACCCCCGACGCCCTCCTGCAGGTAGCT
GAAAGATCAACTCAGCTGAGTTCTATACAGTTCTTCCTGCTCGTGCATACTTGCTGTATC
TCTTACGTTGATTTGAATTCATAATGCCTCAGTTAGTTGGATAATAAAGAGGTCTAGCGA
TGCTAATTGTAGTATTGTACTGATGATGTTTGAAAGCCAAACCAGGATAGGATGCCTCGA
TTTTAGCATTGGATTGGACTAGTGGGATGCCTAAGATGTTCAGTTTATTCAGATTACTAC
TCGTAGTTCCTACCAACCTTCTCCTTCGTTATCACATTCCCTTGGGTCTTTGTTTATTTG
CAGCTGGTGCTTCAGTTTGCAAAGGATGAAGGGATCACACTTGGTGGAGGTCACTCGGCA
CAAGTGCTGCTGGCAAGAGACACGAGGCCTACCGGAGAGTACCTCCTCGACGTTGCAACC
AAAGTATGGCATTAACCCCCTCTGTTATGTTTTAGTAATAGTACGGACATATCTGTTGGT
TGAGTTGATCTGATTATACTTATCTAAAACACTTTCGTGAAGGGTATAAGCGCAATAGTA
GGTTCAGTTGCACTTGACATGGGGATCCTGACAACTCCACAGCTACACTGGATGGTTCGG
AACAAAAACAAAGGATTGAAAGCCTCTGAAGCAGATTATTTCACACAAATCACCGAGTCA
TTCAGGTCGTTTGTCATTCCTGCACGTGTAATCAGTCACGGAGAACACTGCATTATTTGC
TGAACAATTGCATTGATTGGCACAACAGGCATTTATTGGAATTAACCCCTGATGCTAAAG
GCATCGATGAACTAAATGAGAAACTGATTGTGGATGGCGCAAATGGTATTGGTGGGTTGA
AGTTGGAACAAATAAAGCCAAATCTGGCCAGATTAGACATTCTTGTGAGAAATTCAGGAA
AAGAAGGAGAAGGAATACTGAATGAAAGGTGTGGTGCTGACTTTGTTCAAAAGGAGAAGG
TTCTTCCTCTTGGGTTTGGCCCTGATGATGTTGGCGTCAGGTGAGTCTTGATTACTGTTT
AAATTTGCTGCTATATGTTCATAATGATGGATACTTATGTGGACATTCTGATATAACATT
CAGGTGTGCAAGTTTTGATGGAGATGCAGATAGACTTGTTTATTTTCATGTTACATCGCT
TAGCAAGACTAGTGTTGATCTTGTCGATGGCGATAAGATATTATCACTATTTGTCCTCTT
TATCAGAGAACAGTTGGATATTATCAATGGAAAAGACAACAAAGGATTATTGCCTACAAG
GTTTGGTGTAGTTCAAACTGCTTATGCCAATGGAGCATCAACAGAATTTCTTAATAACCT
TGGTCTTGAAGTTGTCTTCACTTCAACAGGAGTGAAATATCTCCACAAGAAAGCTCTAGA
ATACGATATTGGTATCTACTTTGAGGCCAATGGACATGGGACAGTGCTATTCGCTGATGA
GTTTGTCTCGCGTCTAGTGTCTTTGACCGCTAAGCTTTCTGAAGCTGCAGGTGAGCTGTT
CATGGCTTGTACAAAAGCTTTTTCATTCTTTTTTGTTAGTTCATGTATTGTTTTCCCCGT
GTTGATCTAAATTCTCTTCCCTTAACTCTTTCCTCAGGTTCTCCACAGCACCAAGCTGCC
TTGAGATTATTAGCGACAAGTCAATTAATTAATCAAGCAGTGGGTGACGCTATAAGTGGA
ATGCTTTTGGTGGAGGCTGTTTTACAGCATAAGAGATGGTCATTCCAGAATTGGTGTGAC
CTATACACTGATCTACCAAGCAAACAACTCAAGGCAAGTTGTTACTTTTGTAATTATAGA
ATGCACTACTCCAAGTTGCTATTTTGCCTCCATAATTGTGACGGTTGTTCAGGTTAAAGT
GAAAGATCGGACTACTATTGTTACAACCGATGCAGAACGGAAAGTTTGCCAACCATCTGG
CTTGCAAGAATTGATAGATAAGGAAGTCGGTGAGTAATATCTCATTTGTGTGACATTTTT
GTTCGATCTAAAATCTGAACATTGATGAATGAAAATGTACTAAAACTTATGTATTTTATT
GCAGTTAACCACTCTCACGGGCGGTGCTTTGTGCGACCATCTGGAACTGAGGATGTGGTA
AGAGTATATGCAGAGGCATCTACCGTGGAAGCAGCAGACAGCCTTGCAAAATCTGTAGCA
CAGCATGTTGAGCGCATTCTTGGGTTTTGCTAGTTGCGTTCTTCTTTTATCTTTCATCTT
TTTCTGAAACGTGTAATTTTCAATTTTAGCTGACCCCCCTACGTTTTGAAGAATGTAGAC
ATATATGTATTTTGTTTCTGTGCAATTGCTGATTTTTTATTGTACTGTACAAGTATATGC
AGAGGCATTACTTTAAGGTCGATTGTTTGTTGCCCGCCAAAACTGGCGTCCCCATTTTTA
AAACACATGAATCATCGAATTCAAGATTCTTAAGCAAGTGGACTGAGCTGATTCTTGTTA
TCTTGTGATTGATGTGTTTCAGAAAGTTAGAAATGAACGGATTGGAGAAAATTCAACTGA
AAGGTGTACTCAAATGGGGAAAAAGGCATATACCGCTTTATATCTCCCCAGGACATGATT
CTTGGTAACATGTCCGTGTCAAGAATGCATGCAGTCAAGATCTCAAAGTACCATTTTTGC
TGTGCTGCATATAAATGGACGGCTATGTAACACACCAGGCAAGGCAAGAGCAATGATTCC
ACGAGCCTCATAGTGACACAAAATTTGGAGTAGCTACCCAATGCAAAGATGTAGAACTAG
AGGGAAAGTACCCTTTTGAGCTCGAGCTCATTTGAAAGTAAACTAGAGGTCCTTTCTCGA
TGTATACTGAGGCACCAACAACAGTGGCCCACACAGCCACACATCCTGTAAGCTGAAAGG
ATTTCAAAATATAAAGTGATATTCTGAATAGAGGATTAGCATATTTATCCATTCCTGGCG
ATGTATCGGGGACTTGATTAAAAGTGATGCCAAGGGGAAGTCGGAAAGTTGGTAACTACT
CCATCTGTTTCTAAATATAATTTTTTTAAAGGTTTCATTAAAAACTACTCCCTCCGTTTC
AAAATATAAGTCTTTTTAAAGATTGCACTAGAGGACTACATACGCATGTATATAGACATA
CTTTAGAGTGTAGATTCACTCATTTTTTTTTGTATGTAGTCCTTTAGTGAAATCGCTTAA
AAGACTTATATTTAGGAACGAAGGGAGCACATACAAATATATGTAGACATATTTTAGAGT
ATAGACTAGATTTATTCATTTTGTTCTGTATATAATCTCGTAATGAAATCTTTAAAAAGA
CTTATATGAAGTATTTAGGAACGAAGGGAGTACTTCATATTCTTTACAATCAGGAGAAAC
TTTCCTGGGTGTGCGTTCAGGATTTCAATGAGATCATGTTTAACTATTAGAAGCAAGGAG
GTGTACCTTGTAGTCCAGCCTGTATGCAAAACTTCGGTGATGTTTTATCTTTTTGTGACC
TATCTATAACCGGACTCTTTATATCCTTCTCAAACGTTCGAAATAGTTATCCCGGTCAGT
GTCCAGTCAAGAAAGTTAACCCAACCCGATTTTCCACTTCTTATCTTACCTAATAATAAA
GTAAATAGTGCTTTTGTGCGTCCGTCGTGAAATTTGCTCCTAAAGTTCGCAGGAATTACC
CACCTATGTCACCGATAAGTGAAAAAACAATTTGCTTTTTCTTATCTTTTAAAGTCGGCC
GTTACTTCTGATTCAATAGGCGTCAGTCCCTCAACGGATCACAATTGTGCGCTTGTCAAA
CTGGTTGGTAGCTTGCGCTTGCACCATCAAGACCCAGGTTTGATCCCTCATTCTGCCACT
TTTTCATCCACTTTTTTATATATTGTGTCGGCGGGAGGCTGCCTGACTGGGCCGGTGGCT
TTCAGCACTGATTTTGTCTACTTTTCTATATTTGCTTTTTTTTTATCTTTTGACTTTATT
TAGATATACTCTGAATATTTTAATCATAAAAATCTTCTATATGCGAACTATCACCACCAT
CGAAGCTGTCCATCGACGAAGAAGCACCACTATGCCGCAGTCAATCGCACCTCGTGGAGA
CCACCGACGGTCGGAAACCAGATCAGCATCACACGCCGCCGGAGTGCACATCCTCGCCGC
CATGGACCTCGGATCTGCGCACCCCAGGGGCGTTGAGGCGATGCCACACCGCATAGACAC
CAACCGGTCGCGTCCCTCGCAGCAGAAGCCGCCGCCCAAGCGCTCGTCGTCAGATCCACG
ACAGCTCATCGCCCCTCGAACGTCCCTGCCGTGTGCCGAGCACCCGCCAGGCCCCTTGTC
GGCTGCATGCCTCGACGGAGGCCCATGCACCCACACCACGCCGCCCACCACCTCTGCGCC
ACGTCGCCACTTCTTCCATGTGCCACCTGCAGGCCTGTCGTCGCGTCGGACTGGCACGCT
CGACCAGATCCGGACCATCAAGTCCTCTGGCCGCCGAGATGCCGTTGCAGCCTATTGCAC
CCAACCACACCGCCCACCAATTCTGCTCCGCGCCGTCACTTCCTCCTCCCGCCACGTGTA
GACCCGCCGCCATACCAAGCCGGCTCGCGGGACCAAATCCATACCACCCAGTCCTCCAGC
CACCGCGACGCCGTTGCACGGACGCTCGCCACCGCCTCGCATCCACCATCACACAGCAGC
ACACACGTAGCAGACCGCCGCCGACCATGGCTAGATGCGTCGATCACCCTGCGCCACGCA
TCGCCACCCGAAGAGAGATGCCCTGCCACCGCCGTCCCTGGTACCTGCGCGAGCTTTGCC
GACGGGAGCCTCTGGCAGCGGCAAGACTGTGAGGTGAGGGGGAGATGGTGTAATGACTAA
GATGCGGTCNNNNNNNNNNNNNNNNGCGATGCCCCAAAATGGAAAGAAGCACATCTATGC
GTTTCGCAAGCAAGATAAACATAGCACATACATAACTAAAGAATGACAAATAGGGAATC