Map Locations of contig_50245 (7744 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_50245

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_65478 2 1673 bp MLOC_65478.1 Available Available LOC_Os01g22600.1, FRAME:-1, EVALUE:0.0, 13101.m02396 protein mitochondrial carrier protein, putative, expressed





CDS Structure of MLOC_65478






Contig Sequence (7744 bp)

>contig_50245 7744 assembly3_WGSMorex_rbca.fasta
TGGTCATCATATAAACTCATTGAACCCAACAGATGGACTTCAAGAACTGCCTATGAACAA
ATCCTATAAACATAACTTAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTACCAAA
ACCACATATGAAGAGATATGCTCTAATAAGTATCAATATCAATCTCATTGAAAAACTTCT
TCTCAACGCATTTAACATCTCTTGTGGCATTGTAGATCTCATGGTAGCTCGTCAATATTT
GAACTTTGAAAAACTCATTTCGGATGATGCCGCAATCAAAAGTTATTGGGTTCAACTACA
TTGGATTATTCATAAACATATTCGAATTTTTAATGAGTTCAACGGCCTTTAAGTTATTCG
ATAGTTCCGGACAAAAAGACGGTTATTGCAAATTATTTCTCTTCAAATAGCTCATCTAAT
GCTGAGTTAAATGACATAATTTCTAAGTTAAGTGTTACGTCGACTTTGCCCAATGGATCA
ATGTATGCTATGGAAATTTCTGAATTTATCAAAGAAAGAAATTGTTATCCTAATACTTCT
ACTGCATATTAGATATTATTTACTATGACTATGACTGTGGCATCAAAAGAAGCTTTTCAG
AGTTGAAATAGTTGAAATACTACCTGAGATCTACAATGTCACAAGAAAGGTTAAATGACT
TGGCAACTTCATGCATTGAGAAAAAATTGTTGAACAGATTAATATTGATACTATCATTAG
TTATTTTGCATCTCAAAATTTTAGAATATGTATACATTCCTTAATGTACACACCGATTTT
GGCTGCACATACTTTTATTGTTACAGATCGAGCGCGCACACACACAATAGTGACACCAGT
TTTGTGACTTCTAACCCGGAGGACAAGCTTCTCACCAAGAAGCTCGAGAAAGATGATTTC
ACACAAGACTAAAGGACTCGTCCACTTCCAACTTATCTCTTGCGCTAACAAGCCGACCGT
GACGATTGCCGCACTCAGCAGCCGAAAAACTGGTGTAATCACCATTGCCAGTGCAGTGTT
TGGATCAAACTCAAAGCCACAAATCTCAGACGACGTCCTAGCTAAGGATTTCAGGTGGAA
AAGAATACAATAAAGTGGCTCCAAGCTCAGTTTTGGATGGACTTATGTACTCTTGAGATA
ACAGCAATATATATATATATATGTATGTGTGTGTGTGTGTGTGTGTCTTTCACCAAAAGA
AACGTTAGAACAAGAATGCCAAAATCAACAAGGTCTAGACTGCAGCCTACCACCTCACCG
ATGAGATTAAATTGATTTGGACGTGCCACATCTCATCCAAAGAAGTGAGCTACAAAAGTA
ATGCAAAATTCAAGCTTTAGTAGTACTATGTTAACTTAGATGGGAAGACACAAAACTCTC
TTTCCGAATTTTTTTGCTCAACAGCTACAAGGTGGTCCAGTACCCAGATCAAGCCTCTGA
CTCTCATCCTGAAACGAGCACCCTTCAGAACTTACAAGGAATTTTTTGCTCGACAACTAC
AAGGTGCTCCAGTACCCAGATCGATCCTCTGGCTCTCATCCGGAAACGATCACCCTTCAG
CACTTGGAAGTATTTACATGCCGGTAGTTCCGTACGGAAACATGTTAGGCTTTATAAGGG
GATTTGCATCGAGAATTTAAAGATCGGTGTTACATCTCAATCCCTGTACCAAAAAGAAAT
TAACTAGATGGCCAAAACGGAAATGAGGACCAGCTAGGTAGAGCAGAAGCCAAAAGGCTC
ATTGTTCCGGTTTCACAGAAAGTCTCTCTGCAATTTTAAGAGGAAAATTAGTTAAATCAA
CCAGGGAGACTAAAGAGGGCAGGGATGATAATTTCAAGAACTGGGCTTACTTATCAGCTC
GTACGTGACAATCATTGATGTACCCCAAAGAGACATGTTAAGAAAGCGTGGTCCAAACCC
TCGGTATAAACCTCTCCAGCCATCCTCTCGCAGGAGCAGCCTGGTAGTCTTCATGACGGA
TGGCCTTCCACTCCCGTAGTTGTCCATTACCTGAAATAACACATGTTAGCACCTGACAAG
TCGCCAATGGAACTCTGACAAAAATCTATTGTGATTCCAACCATGTGGATGACATTAGTA
AGCTGTGATCCCATGTCCCAGACACTTCATACCATAATGATAACAGCATATAATTTTGAT
CCTCTACTACCTAATTGCACCTACCAGTGAGGGACTGTTCAAGGAGCAAGTCCCCGGCAG
CCCAGGTTCGAGTGCTTAAGGACGTGAGTTTGGGTTATTATTATCAAAAGCAAAACGCTG
TAGGGGTATCCCTTTACCGCTTTCCTTTCCAAAAAAAAGAAGAGGGGCTATACACAGATC
TGTTTTTCTTAACCATTGATTGGAACCAATGGAACTCAAAGAGGAAGCTGTGGTAAAGAT
GAAACTCATTTCCCAATTGGAAGTAATGCCCAGCAAAGAAGTTGACAACAACCAAGGTTC
AACCATTCAGTGGCCCTTCGAAACAGGAAAAAATGCATATCAAGAGAAAGGAAATAATAA
ATTACCTGAAGCCGGGTCTTGATGGTATCTATTGGTGTAGTGATAATCGATGAGCAAGCT
CCAGCAATTGTTCCAGCTGTTGCTTGCACAGCAATAAGTTCTGAATGGGAAGGTTTCTTT
TGTGTATCAATCCCGTAGCCCAAGCTCCTAAATAGGGATTGCAGGAATATAAATAAGATG
TACGAGTACAAACATTAGACACAAAGGAAAGGGAAATTATTATGTAAAGCTGGCACACCT
CCAGATAGCATGTTGAGCACCACCATATGAACTCCACCAAAGGGCAGAAGCTGGTGATTG
AGTTAAAAGGGTAATTCCAAAACCTCGGTAAAGGCCCCGGAGGCCTTCACTCCTGACAAC
CTTATTTATCACATCAAATGGGCCTCTATATGTTTGCATCCCTGGCAATCCTTGAACCAT
GAGCCTCTGACAAACCTACGAGCACAGATACAAAAAGGTAACATGTAAACTAGAGTAAGA
AAAATGCAATGTACCACTCAGCAGAATGCTACTCCCTCCGTTCCAAATTATAAGATGTTT
TGGATATTTCAATAGTGTACATAACCTAAATGGCAAGTTGTTTTCTGAACCATCATCCCT
TGTCAGATACAGAAATGAAGATGCAAGAGCTACATGAAAATAGGAGGGTACTCCCTCTGT
AAACGTATAAGATCTTTTAGAAACATTGTAAGAGGTCAGAGACATTGGAAACAAATAGAA
AGGATGCTTACCACATCTAGGGGTACAGAATATGAACTTGAAAAGATACTTGACACTAGG
CCTGCTACACCATTAGCAACAGCAATCCTTGATGCGTCGGACATATCGAAATGCTCAGAG
TATTTAAATGCCATTTCTTTGGACATCTCTAGTGAAGTTAGAGCCAAGATTCGTCCAGGC
AGAGCTCCAACTGCACTGGTGCCAAATCCTCTGAAAACACCAGGGATGCCATCACTCCTC
AATATCTTTCTAAAAACGACAAAGCCAGACATATGTGAAAGTCCTCCTTCGGCAACCTGC
ATTCTAGTCTTCACAACAGCTGTTGGGTGCAGAACACCTTGCTGGGCCGTAAATAGGAAT
GCTCCAATGACATGAAACTTTGTCTTGTCCAACCTACAGCGTTATACAAAAGGTCAGCTA
TTTTGATCAGAAGAATATGTACTCGCAAGTTGGTGATGTACCTAACCCCACATGTATAGT
TACACGGAATTACCAGTTACAGTTATAATCCTTTCAAGATAACATCCCATGTTATCAGAA
TCACAATTCTGTCGTGTGATTCTACAATCTAGGATTTTATGACTACACACAATCTACGAT
TTTATGACTACTAGTTATGGTCATACGATTTGCTACACAGAGGACCGATCCAGTTCCTGA
TGACATCTGATTCTGCAAGGCTTATAAAGAAGAATCGATAGAATAGGCACAACCACTGCT
GTTCTTACAATAATGGTATAAAATAAAGTGGACTCACTAAATGAGGAACATAGCAGCTTG
AGAAGAAAGTGAGATTGGCAAACCCTAGTTTGCAGCACACTATACCAAATGCCCAAACTG
TAAGTTTCTGTTCCCTAACTCCTGCAATGGTCGATATATGGGATAGTAATAACTCTGCAC
ATTTCAAAACCGGGCCAAAAAACCATACCGAGAAAAACTGAACCGATCCTGAATTTCTGG
TTAAAATGGTTTTTGGTTTGCAGTACGGTACATAATCTAAAAACCATACAGAGCTTGGCA
TTTTGGGTATAGAACTGAAATTACCGATTAGATGCTCAGCCCAACCCACCACAGCACTTC
AGTCTTTACCAGCGCAGCCCACAACTACGGAACACCAATCACCACATGGGCTCACCAAAA
AGTTAGCCTCACGTCCACACCACACGCACCAGACAGGACCCTAGCGAGCGACTACGAGCC
GGAGCAGCTGGGCACCACAGCCGGTAGCGTGCTAGCCACCCGCTCCTCCGACGCCACACC
TCCGAGTCTCCGATGCATGACCTGGGTGCTCGCTGCCTCTCCGCCCCCAACTCCGGCACC
CTGGACTCCTCACTGCATCCCATTCCACAGGCACCGTGCTATCTTTTACTATATGAAATG
TGTAGATGTAGGTGATGTTTTTTTCTGCGCAGATCCCTGCCACTTTCACGGATGTGATAA
GAATGCAGTTCACAGGGACTAGGGACACCAAAGCCAGACTTCTATTCTTTTTGATGCGCT
GATCCTTGCCTCTTTCACTGATACAGAGTCACTGCTAGTTGAAATTAACATGGCTAGAGT
AACAATTATACTTATGTTCTGCTACGATTATTCGGCTGCGTAGTTCTAATGCAGCTTTCC
TGATTAATGGAGAAGTGCTAAAGATTGTCTTCATGACTTTGCATTGCTCAAAGTTGAAAC
ATAACTAAAAAGCTGTTGCCTCACTTTTAAATTCGTGTCAACTTTGGTTAATTTGATACA
TACCGAAATAATTTGGCATATGGCGAAACATTTCATACCATATTTACTGAAGCATGAATA
CCGTGTATACCAAAAAACCGTGCTTGAAAGCTACTTTGCATGCACAGAAAAAGTGTAAGC
ACTAAATTGGATGGATTCTGAACTTGAGTACTCTTCTGGACTTACTACATTAGAGGTTGA
ACAAGCAGTCCATTTCTATTTGTTTCCATTCAGAAAATGGCGGAAGCCGTAGCCGAGTTG
GCGTTCCCTGCAACAAAGTTTCAGCGTGGGCACGCGTCCAAATTTCCGTTGCTGTTCAAA
CTGACTGCTCCCATAACCCAGGACAAAAGTGCGCTCGTGAATCGGCTTCCCTTCAACCAA
CACGACCGCAACGAATCCCCGATTTGCCAGACTGTAAACCCGAATCTCGCACCGCATCAA
GAAAATTTAACCATGAACAAAACGAACTGGGGCTAAACTACTGCTCCGAGTTGTATTGGT
CGCCGAGTAGCTAGCATACGAGTTAACGGAAGTACGGGACACGACGCCGCAGGCATCCTC
GTGGCGGTATGAATGAGCACAAGAAGAAGTATGTTTCGGGAAAGGGCGGCTACCTCTCCC
AGTTGATGCTCGCCTCCGAGAGCGCGAGCCCGGTCGTGGAAGCCGCGGAAGTGTCCGCCG
CCGCAGCAGCAGCAGCCGCCATCGGCCACCACACGCACGGAAGAGGAGCTGACGGCGGGA
GAGAAGGCAAAGGAGGCGAGGGGAGGAAGGGAGGGAGGGGCTCGGTGGTCCTGCACGGTA
GGTCGACTGTGGTGGGTGGGTGTGCGGGCTCTGCTGCCTGCTCTTCCGGTCTGATTTTAT
GGCGGATACGCGCACGGGGGGGAAAGGGGGCGGAGGAAGGAGACCGGAATGGCGGCGCAG
GAAAAATGCTGGAGGGGAAATAGGGTTCGTGGTCGAGTCATCTGGGCAGCTGGGGGCTGG
AAGTTTCGAGCGTTCGGTCGGCACACCACGTGTAGCGCGGAGGTGGATCCTCAAGGCATG
GTGCTACAGTACCCTGCGAAACAGAAGAGGCAAGTCAAAGATCACTGTGGTCTCCCCTAA
GCCTAGTCGTAACGGGGAGTATCATATAGTAGTATCATGCATAGGGTAAAGTTTGAAATT
AACCCTGAGGTTGTAGAGGCCGACACTGATAAACCCTCACCTCCAAATCCTTGAAGTTGG
TAGGCTGACCTATTTGATCCTCGTCTATCCTAACCCTAGGTATGTTTGGCACACCGGAAA
AAGTACAATCCTGACCGGGAACTCGTTTTTCTCAGTGTTGCGCGGGTCAACACATGATAG
TTATCTTCTTCCTCGCTCCCATCCCTTTTGTCATGTCTCCTTTCTTGTCAGATCCATCAA
GGTCAATAGGGTAGGTGCTGCTTGGGAGATGGCTACATGATACATCGACGGTAGGAGATG
CAGCCGAGGCGAGCCTGCTGCCATATAGTGAGCACCCTCTGAATGACAGCCAACGCAGCA
GAGCACTTCGGTTGGCGCGCGACACTCGAGGCCTAGGCGGGGTCGTACTCGCACGCGGCG
GCGCTCTGGGCTTGGTCTCGAGATATGTCAAGGACCCCATCTTGTTGCAGCGCTACTCTT
ACTTCTCTTTGACACAACACTGAGTCACTGACAGCTCAGCACGAATGGACACGGGCGACA
AGGGCGACGATGATCACACCGACCGAAACTTCTACTGTATGCAAGACGATATCTACGACC
ACTGAATGAAGATTGAAGCACCGCTGAAAAACACGGACGTAAAGGGTTGGTTTGATCTAT
TCATGCAAGCACGAACTAGTAGTACGTGAGTCTGAGTCTGGCACTCTGGCTTGATCGATT
AGGTGATCTCTTCTGGATACCCGCACGCGAGACGCCGGACACCGATGGTTTGCAATAGAT
CCATGCCTGGTATTTTTCTTGCCTGGACGAGCAGCAATCGCTCGCCAGGATGCATCGAGG
AGCTCGTCTGGGATGGCGTGCACGGCCGACCCGACCCTATCCGACGCACTCATCAGACAT
CGGGACATCTTCCCGAGGCGAGCCCAGGATCGGTTTGGGAGTGAATTTGTGAGGAAGAGA
TCGGGGAAGTTGTGAGGAAGAGATCGGGGAAGGAGATGTATATGACAGATGGATGCAGAG
GCCCGGGGTGACCCTCTTTTTAAAAAAAATGACAAGTGGGTCCATGTTGTAAGTGATTGT
AGGAGTCAATCCCGGCTGGGATGACAACTTTCCTATTACAACAAACAAGATTTTATTCAC
ACAGGGCTCGGTTTGATTGGGATCTGTAAATACAGGGTACCAATTTTAGGGATTTGAAGG
TGAGGGTTTATTTCAGTCGACCTCTACAACGTCAGGGTTTGTTTCAAACTTCACTCTCAT
GCATATGATACTAGTGTATGATACTATATCCGTAATGCATAGTATCATGTACTACTCCCT
CCGTCACGGTTTAGAAAACACAGTTAAACTTGCGTGCGTTTTCAAAATAGACAAGGTTTA
AGGCGTGAAAGCAATTACTCTCATTAATTAGTACTAGTACTACTCATGCATGCGCCCTCC
TAATTTGATGCTCACGCATTAGTACTAGTATTTTCTCAGTTGATTAGTCGCATTAGCATC
TACACCTACTACATCTCACAACCAATCGGTGACTACCTTGGTCCAAGATATTTTCCAAGC
GTGCATTCTAAACCGTGACGGAGGGAGTAGTATCATGCAATAGTTCATTTATTGCCATGC
ATGA