morexGenes - Barley RNA-seq Database

Contig contig_50239
Source Contig contig_50239
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_50239 (8339 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_50239

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_65474	1	553 bp	MLOC_65474.1	Available	Available	None
MLOC_65475	16	2760 bp	MLOC_65475.4	Available	Available	LOC_Os06g04330.2, FRAME:-3, EVALUE:1e-47, 13106.m00387 protein expressed protein
CDS Structure of MLOC_65474

CDS Structure of MLOC_65475

Contig Sequence (8339 bp)

>contig_50239 8339 assembly3_WGSMorex_rbca.fasta
CATGAGCGTCGGCCCTTCGCGTCTCCAACAATGCTCCATTGCAACGCCGCACTGGCACGG
CAATGCTCCAACACAGCACCGACGACCCATCACAGCTCCGACGATGCTTCGTTGGAGCGG
CTGCTACGGTGAGGTGGGTTGGATCACGAAGAGAGAAGCATGCGCAATCATGGCAGGAGG
CAAGCAGTGAAAAAGAACGACTGGAGGAGGGCGTCTACCGCGCGGAATAGATAAGGTTGG
CTGCATGGAGGGGAAAGCGGTGCGTGACCTACAGGGATACATGAGGGAGAGAAAATCAGC
CGGTTGATTTTAATACTTTTCCAAAAGACAATCTAGCAACTTGGATTTACGTCAGGCTAG
ATAAACTTGCAATTCGTCCCACTTGCATATTTGGATGTTGGATGTACGTACCACACATGC
TAGAAACCGCTGATCTAGCTACTCGGATTCAAAGACATGCAAAATAAAATTAACTGTCCC
ATTGCTACTTTTTTTAGACCATCAGACAGTAATTACAAACTGATAAACAGGCAGGTCCAT
CTTCTCAAACCTTCAGACGCATCGGCGGTACAACGTACTTCCCCCACTTTCCCTTCAAAC
CAGCAGCAGGCCTTCCAGCATCCGGTTTTGCCACATCACGGTCCTAAACAAATAAACCAC
TTGAGTGACGTTATACTAACACAGTACAAAGTGCACCACATAAAAACATACCCCGTATAC
ATATCTAATCCTTTCCTTGTTCATCCTAGCATCAGCAGCTGGGAAGCCCCTTCTTCCCAG
CTGGCTCTTGTCCAAACCGTCAGCAGCAGCAGTTCTTCCAGCATCCGGTATCAACACATC
AGAGTCCTAAACAAATAAACCACTTGAATAGTGACATAACTAACAAACGACCCACGGGAT
AAAATACATACCTGGAATTGATATCTAATCCTTTCTTCCATAGCTTTCATCTTAGCATCA
AAACCCTCAGGCAAATCCGGTGGAAGAACCACGCACGGTCGTTGTGGCCACGAGGGATCG
TGGCCACCTTTGTATTTACCAGCATCAATGGGGTGCTTCATACCAACATTAGCTTTTTTA
CAACCATAGCATGTACCTTCATATTCATTTAACTCTTAGAGATATTAAAACATACTCCCT
CTGTAAAGAAATATAAGATCGTTTATAGTGATCTAAATGATCTTATATTTCTTTACAGAG
GGAGAATATGTAGTGAGCTCAAGCAAGGGAACAAGCCAAACAGCTCTATGGACAAAACTT
GCCGAAATCTAAAGCCAAGACTGGTACCGTTATCAACAGCAGGTTCAACCATATGGAGAC
AGGTGAGCTTGAATTGTAGTCCTCTATTCATTCTCAAGACTTCGGCAAAGAAGAGATTGT
CGACGCCACCTTTAGTTTTTCTAGTACAATTCAGATGATAGTACCAGCCACCTTTGCCCT
CATAAACTTCTTGGAAGCTCACGACCTTCTCAACATGATATGCATCATCCTGAAATCAGA
TTGCATCAACAATTAGTTGGTGTAGTACAAGACAATCAAGGTCGCATCAACACATTCAAC
AGAGTAGCTACAGAGGTAAATTTGCAACTGATGCAAGTGAATCCCAGGAGTGTGGGAGGG
AGAGCAAGCAAACCTCCAAAAGATTATTCTCCTCATTGTACTTGTCCAACAAAGCTTGAA
CCAGTAGCCCCATATGATCTTCGTCCGGATTGGATCTTGAAGAATACTTTCGTGTGCCAT
CTGGCCAGTGAAGAGCATCTCGTATAGCAATCTCCGAACTGGAAAGCCAGTCGTTTGTGC
ACCTGAGAAACAATGAATGGAAGCTAATTAATGAAACTTTAACCATGTAAGAGAGCAAGA
CTGAGAAACCTTGGACACGTCAGAGGAGGAATACACCTGCTACTGGCTGCTGTTTTGATT
AATTAGAGAGCGGTCTATTATGTCCAGTTCATAGTTTAACTGGCCAACTTGATTAAGTAT
TAGTAATTGCTTCTTATTTTCGGAAAGACTGGGAGCTAAGAAGAAGCTTTACATTTTTGG
ATCACGCAGTTTATCAAGGCGGCAGAGTATAGCCTTCTTAGCTTCCTCCAAGCTCCGGAA
CGGCCCACCCAGCTCAGGATACGTGTGGAAAGATCCTCCAAGATCTACTCTTATGAAAAA
TTGATGATTCCAACCGGCAGGTTTCCGAGCCAAAATGGGCGGCGTCAGCGAGTGAGTCAC
CTCCTCTGCCCGGGTGGAGGAAGCGTCCTTCGACGACAACATACCTGGCTGGAATCTGGT
TTCACAAGAGTAAAGAAAGAAGAAACAACAATCAACTTAGATCTCTTCATCTCAATACCA
CTCTGTTGATCAGTGTGTTTCAAAACTGGCACGGGCAAGAGAGTAATGAAAGTTGGGCTA
ACTGGTTCAAATTGGGCATTGAATTCATTTAAGATTTATTTTGACTACAACATAAGCATA
CAGATAAGAACAAATGGACATACTACCCCGAGGAGAGAGAGAGAGAGAGATTCATACGGT
GTAGGCTGTGGCGGAGAGGAAGTGTTAGTGATTGACTCCAGTGTTGTAGTGTCAAGCAGC
TCCTTAGAGGCCAAGACATTTGGTTCTCTGTCCTCACGCCTGAAATAAAAAACAAAGAGG
GAGATTGTAATGCAGAAAAAACAATCTAGTTAAATACCGCTCCGTTGACCAGTGTGTTTT
GAAACTAGCACTGATGAAAGTTGGCTAGCTGGTTCAAATTGGGCATTGAATTCATTTAAT
AAATTTGATTTCGACTACAACATAAGTATGAAGGAAATATACCATTAAGATCAAATGGAC
AATACATACTACCAACCACCTCTCCCCAAGGAGAAACAACAATCAACTTAGATCTCTTCA
TCTAAATACCGCTCTGTTGACCAGCGTGTTTCGAAACTGGCACTGGCAAGATTAGATGAA
AGTTGGGCTAACTGGTTCAAATTGAGAGAGAGAGAGAGAGAGANNNNNNGAGAGAGAGAG
AGAGAGTGAGTGTGAGAGTGAGTGAGAGAGTGTGGTTCAAATTGAGAGAGAGAGAGAGTG
AGTGGGAGAGTGAGTGAGTGAGAGAGTGTGGTTCAAATCAAGCAGCTCCTTAGAGGCCTA
GACATTTGGTTCTCTGTCCTCACGCCTGAAATAAAAAGCAAAGAGGGAGATCGTAATGCA
GAAAAAACAATCTGGTTTCAAGAGAGTAAAGAAAGAAGAAACGACAAATAATTTAGATCT
CTTCATCTATATACCACTCTTTTGATCAGTGTGTTTCGAAACAGGCACAAGCAATAGAGT
AAAGAAAGTTGGGCTGACTTGTCCAAATTGGGCATCGAGTCTATTTAGTACTCCTCCCTC
CCAAAAGATAAGACGCACTTTATTTTCGCTGGTCAATGACTTAAAACTTTCACTATGATT
TGTAATTCATTATATGTCCACAAAAATATTATGTAGATATATGAAATGAAAGAATTTTGC
AAGAAAAATGCAACAACACCATTTATATACATTCAAAATTAGAAATCCAAATAATTCGGT
ACATACTAGTTGTCAAAGTCATGGATTAAAGACCATGCAAAGTAAGGCGCTCCATACTTT
GGGACTAAGGGAGTAATATCTAAGCGGCAATTAGGGTGTGCAGAGCTATAATAACAAATT
GGATTTGTTTCTCTGTCCTTGGTGTGAGGTGCGGTGGCAGTGCCAATGGTGTGGTGGCAC
AGCAGTATAGGCTGAGGCTAAAAATGTCAATGGACAAAACGACTAAGATTTGAATGCGTT
GATGATCGATTGATGGTAGCTAGCTAGCAAAACTGTTTATTAGAAACCCATCAAAGTGTC
CATCGATGCACAGTTTTATAGTCAGGTATCTGATCAACAATCTATGTTTTTTATAAGTTG
GCGCCTATTATGGGTTACTTGCAGCTAATTTAACAGAAATAGGTCGGATGGAGCGCATAC
CTTTGAGCCAGCTTCAGCTTGTTGGCAACAAAAGCTCTGTTTAGCAGATCATCGATGAAT
TGAGATATGGATGGATCAGGGCTTGGAGTGACCGTTTGTTGAGGTGCAGGCTCATCTTCC
TCAGCGGCATCAACAACCCTAACCAAGCAAGTTAGCTCAGGATTCAATAAACACCCCTAA
CCAAGCAAGTTAGCTCAGGATTCAATAAACACGACAAGACAGGATAACGAATAACCACTG
CCAAAAAAAAGGTCACATACGGCGGTGGAGGATCGCAGGGCCTCATCCAGAGGTGGTAGA
GGACTTCCCTGAAGACATCTTGGACGGGCCGTGTCAACCCTTTCGTGTCTTTGGTGACGA
GAAACCCATACATATCATTGTAGGCATGAATTATTCTGTCGTCAGGAAGAAGACATAGGA
GAAGAAGGGGGTTATGGGGATCGCCACCGAGGCGGTGGCGTCGGACGGGCTTCTTCGCCA
AGGTGGGTGGTGGACGATAGTGGGGCAGGTCGGAGATGACTTCCCTGAAGACATCCTCGA
CACGTCGTGTCGACCCATCCATGTCGTCGGTGACAAGAACCCCGTGCCTATCACTGTAGG
CATGGATTATTCGCTTGTCAGGAAGAATACATCGGATAGGGGGGTGGGGGGCATCTCGGC
CGCGGTGGCTCCGTCGGACGGGCTCCGCGATGGGAAGACTCGTCTGGAGGTCGTAGAGGA
CTTCCATGTAGACATCTTCGACGGGTCGTGTCGACCAGCGGAGGGCATCGGTGACGAGAA
CTCCATGCCTATCTTCGTAGATAGAGATTCGTCGGCCGTCGGGAAGAAGAATTTGGTCGG
GACGACGAAATAGGGACGTGGATTGGTGGTCGCCTCCGGACGTCGGAGGAGGGGAGCGGA
GGGGAGAGGGGCGCTTTGGTCGGTTGTCGCGGTCGCGACTTCGGATAAGCTGCGCCATTG
TGGGGAGAGGTGCGGCAGAAGACGTGCTAGGTTTGGAGATTTCGTTGGGGGCGAAAGGTG
CGCTGTGGTTGTTATCGCTGGGGGCGGTGGAGGACGTGCTAGGTTTGCGAAACACTTATA
TGCAGTAGTCCGATAGAAAACATTCCTCACACGAGTCCTGCGCCGTTGATACTCTTTTAA
TCACACGGTCTATATTCTAAACAAACAACCCGTGTTAATCCGATCTCAGGAAATCCCGGG
AGATCGCCGAGCTCCATCACCGTGTGGGCTACCTCCGCCACCAACCTGTTGTACACCAGC
AACTCCCGACGGGTACAAGTGATGCACACGGTGGTGCGCCGTCCCGCCCTTATCTGCTCC
GTCGAACGCTACTTTCACCGTCGATCGCGTCACCCTCGTCACCGGTCCAGTTCCCCGCCA
GAGCCTGGCCCGTCATCAAACCCTACCACACCACCCTGCTATGCCTTGGCTCGGCAAATA
AGTTGCACTGCGGTAACATAAATTAGGTATGATTCATTTTTGATGTATTGATTTGATTTG
CGTTACTTTCGATGCAATGCTTGCTTCGATGAATTTTGTGAGTGTATCTCCATGCTTGCT
TTGATGTGTTGATTGCTATGTCATTTGACAATTTTGGTTAATCTCTTATGCAGATCACAA
TAATATGATTCTCAATCATGGCGGTAATTTTAGTTTTTGACATGATTTCAGAATTCCATG
CTTCCATACAAGTTTATCGTGTACCCAAACTAGTATGTTCGTGATTCTTAGTTCTGTAGT
GTGCCTCCAAAATTTCAATGTGCACATGTTCTCCGGTAGGTGGGTCATATTATGAAATCA
TTTTTTTATGTTGACGAGTGATCTTAAATATGTCGAGATAATATAAAATTATTGCTTTCT
CTAACCTAAGTTGCATGCTTTTGATATACACATGTCTTGTAGCACAACATCCATGTTTTT
CTATTTGGTATATGTGCTTCTATGGTACAGAGTTTCTATTGCTACATGATCTCTTTATTT
CTCATCTATGTCAGCAATACATGTCACATGCGTGAATTCTTTTTCGAGAAACAATGCATA
CATGTTTTCACATATGCAAAGAGACAACATTTAGGATTTTTTTCTTCGGATATTCATGCT
TCCACTCATTAGTATTTATGTAACTACACCTTGTTGTTCATGATTTTTAACCATTTGCGG
TTTTACACTATAATATGCATATGCTTCATAATTGTATGCATCTCGACCTTTATCATAATA
TTAATTTTCGTTAATTTTTCAAATTTCCATGCTCCCATCCCAAGTTACCATGTCCATGTG
CTTCTTTTTATGCAGCATCCAAATGGCAATATAGATGCTTCTGAACAATATACAATCTGA
ATCATCTGAAGCAGAGTGCATGCCGAAGATCCGATAGGTTGTCATTTGTATGCTTCTGAT
AGGCCTCGCATGTGTTGTTATTGCAAAAAAAATCCTACAGACATTTGATACTTCATTTTT
ATCCAAAAGTGCTTGTACGTGCACATGGATTGGCAGTACAACTACACTTTTCAGGTTTGG
CATCTCTTCTTTCTATTATGTTGAATTATTTGGAATGATCCCATAAATATTCGTGCTTCT
GCATTTCATAGAGTTTCCGGCATTTAAACCATGCTTCCATTTTTTATACTCATGTTTGAC
GTGAGATAGCAAAAATTGATGCTCGCAAATACCAATGCTTTCTGTGTTGTACTTCAATCC
AGAACTCCAGATAGGTTGTGTCGAATGTTCACAATTAGCTTGACAAATTTGTTTCTTTCC
TAGAAGTAGGTGCTTACGCTTAAAAAAACAACTATGTGCTTCCTTATTTCTCACATAATA
CTTCCAATGTATAGAAACCTGCAACAAAATCCGAATGTGCTTCTTTGTTGCCAACAAGAT
GTCAACGATGTTGCAATGAAGTTAAGTGCACTATAACCGAGATAAACCAGTCATTGCTCT
AAGTTGTCGGTTGTACTGGAATGACGATGGAGAGCTCTAGGCACACGCGGATCTTGCCCA
TGACCATCTTGTAAAAAGTTGTGTTGAAATATGATTTTATATAGTTGCAAAAAAAGTGTT
GTAATATTTTTTCTGTATCTTATTAAATTTGTTTCAACCCTTGATCACTCTCTTTATGAT
TCCCCATGATTTCTTTGCTAAAAAATACTTTGTTATACAACAAAAAAAAGTTTCCTTGGC
ACAAAAAGAAGCTTTCAAATCTTCTACAGACATAAGATAGATCAAATCCTTCTCTTGAAC
AATATTTTCTGTCGCACTACAAAGTATATTCTACCATAAGTTAAAGGGAATGCTTCCATG
AAACAAAAGCTATGCCATTGTCGCATAAAAATACGTCTCAGAGAAAACTTTGTTATTGTA
TTGTATTTCGCCTTATTTGAAATGTATGCTTCTGTTGGTTCAAAGTAATGTCATCATGGC
AAAAAGATGCACATTATCTTTTGTAATTAGTGGAAACGAGGTCGTTGCCCGCAAAAAAGG
GAACCCCCACAGGGTCCATGCATGCATAAATATTAGCATGGAGTAGCCAACTATTGCTTC
AATCCCGAAATCATGCATGAGACTTTCCTAGTTAATCTGACGACTAGCATGCAATGAACC
GGAGGGCTATGGACTAGTCTGGTAGGAAGGAAGCATCAGTAGTCTGATGTCTAGTGCTCC
GCTAGGTTTTGGAGATTTCGTTGGGGGCGGTGGAGGGCGTGCTAGGTTTGGAGATTGGCG
TGTGATACAAATTAATCGACTGATTTTCTCTTCTCCCTGCACCGCATGAGTCACCTTTGT
TTTCTTCGTCTAGGCCATCGCTGCAAAAGCATCACGTCTGCCATCAGCAAAGCACTGCGT
TGCAACATCGGAGCAATCGTTGGCTGGTGCATTGTAGCTCCGAGAGCCACCGACGAGAGC
TTCATTGGAGCATGAGGAGCTGCCGATGAGAGCTTCATTGGAGCGCCGAGCTGCTGCATT
ACAGCTTGAGCCCGTCAACAAGATCGGGAACCGCAGCGAGAGCTCCACCGAAGCACCAAG
CACAACACTTCAGCTTCGAGAGTGCCCGCGAGATCCATTGAAGCATCGAGTGCTGCAACT
TCGACAACCGCCAACGGCAACACAACATCCGGAGCTGAAAGTGCGCTATATCGACTAGAG
GGGGGTGANNNNNNNNNNNNTACAATTTCATCACTGAGGAAATTCATAGTGAGGAAAGTC
CTCAGTTATGAACTGAGTGCGGCGGAAATAGAACTAGATCAGGAGCGCAAAAACGTCTAC
TCCAAAGTACTTAGCGAGATTTTAGAGATTCGGTTTGCACAGGTCACAAGTATAGGATAA
GCAGGTGATGATTAACTTAGGTGAAGAATTTGAGGTTGAGGAAATTCAGAGCAAGTATT