Map Locations of contig_50235 (8694 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_50235

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_65469 2 2071 bp AK354222 Available Available None





CDS Structure of MLOC_65469






Contig Sequence (8694 bp)

>contig_50235 8694 assembly3_WGSMorex_rbca.fasta
TCGCATCTTGGGCGTGACACCTGCGTGGAGGTTGGTGGCCCCGAAGAGCAATGGCGGCGG
TGAAACGATCCAAATCCGAAAGGAGATCTGGAGCCACTCACCGACATGAAGAGCCATGAC
ATCGTCATGGTCATAGAAAAAAGGGTCGATGTCGGGGAGCATAAAGGAGAGGAGCGGCGA
TGAGGCCGAGAGGGTAGGAGATGCGATGCGGGCAGCGCCGAGCCGTGCTTAAATAGCCAC
ACCCAGACGAACAGAGGTGCAACTGGATTCAACACGGCGCACTAGCCGGAGTAGGCTTCT
CGAGCGCCTCACTGACATTGCATTGAAGCTGTGTCGCTCGCCAGCTCGTCTGGTCGTGTC
ACTCTGACCGACATCAATGTCGTCGAGTCACGTCTTCTCTGAAGCGACCTCACCAACATG
AATGCGTGGTAACCGTTTCTCGCGGAGAGGATTTTAGGTTGGGTGTGGCAAGTGTGGCGG
TCAGGCACGTACGTGGCAGACATCCATACTCCCACAAACCTCCCCGGTTTGTGTCCGCTT
TGCGGGAATTCAAACATGCGTACACGTCCATCGAACGATGCGGCACCATGTTGGACGGCT
TACAACAATTGGACACCTCGATCCGAACATTGTGGGCGTTATGAGGGTTCGCGTTGAAGA
TTCTCTTAGAAAATATTACAAAGGTAATTGCAGAAGCATGAACACGAAGGGCTACCGTGA
GTGAAATTGCCCAAAATGCGTTAAAACCATTAGGGGTAAGAAAGGGCGAGCAATCAACTA
TGCCAAGTGGCACCTATTGGTTGGCTGTAGTGGGAACATATTTTTTTTCTGAGAAAAGTT
TTTCTTCCTGTGAAGATGGAAGTAAGGCTTTTGTTTTGGAATACACTTTACATTCAACTA
CTAATTCCAGCATAATTTTAGGTCGCCACGTGCCATCATGATGGAGATGTTTGAGGGCAT
CATGGACAAGAAGGAGGAGGCATGTATCAAGCACATTGACATCAAGGAGAAAAAGATGAC
AGAGAGGGTTGTCATCTTCACAATGGTGACAGAGAAGAAGATCAACCTAAGAAGGCCAAA
CTCGTAGAGAAGAAGAACAAGCTCGGAAAGAGAAGGGTTGTGTTCTTAGCCATTTTGAAG
GAAAGCAGAATATTGATCATAAAGATGGATGAGTTGGATCCCAATGCAGAAGAGATCGTG
CATATTCCGTCCACACATAGATGGTGAAGGGCTTGGCGATGGAGATAGAGGAGATGGAAG
TTGCGGAGGAGCCGGCAGGGAAGTGATGAGGAAAGAGGCACGAACAGGGCAAAATTTACA
CGGACTAACACTTTGGTGAATGGGTGCACGTAAAAACTCATGAACAGTCGCCGTTTTTTT
TGGTTGTGAAGAGTGCATATATATGCACTTTTATTTACACGGACTCTCGCTCGTTTCCTC
ATCAGATCTTCGAGGACAAGGATCGTGGACTCGGGACCTGCATCAAGCCCGCACCGTTTT
TTAAGAAATTCAACAGTTGGACCGAAGAAGAGGCGAACCGGTGCTGGACGCTCAAGATAT
TCTCCCGTAAGAGCGACCAGGCCTTTCCCTGTCGCTCTTCACGACGTTGCCGCAAACGCC
AAGCCAGTGGTTGCCGCCATCCGCATTTGATGGATCGGCTTTCATCCTACCCCCCTCCTC
CTCTCTAGATCCAGCCTTTGCCCCCCTCTCCCTCCCTAACGCGTGTCCGATCCGATCGAT
TTGCGGACCCAGAATCGATCGATGGGATCCTTCATCTCTTCGGCTGCCGGTGCCGGTGCC
GCGGGCGAGGTTGAGGTTGATCATGCCGCACGCTCCTTCCGCTCTCCTACCATAAAGGAG
ATGACCCGCCTTCTCACAAACAAGGAGCTAGCTCGGTTAGACGGATACGATCCAGTAAGC
TTCCAAGAACTCGTGGCTGGCGACCCCACGTTGGCACAAGAGTACGCTCGTCCTTCCTAC
CTACACACTCATTACGTACCCCAGTCCCCAGCTTAGTTAGCTACTCCCTCAATTCACAAA
TACTAGTATAAAATACACACGGATTGAAATGAGTTGCCAAATACACTAAAATGTGTCCAT
ATACATCGATTCAGGAAAAAAGATATTTCAATACCGACTACATAAGGACTGAAATGAGTT
AACAAACACACTAAAGTGTGTATATACATCCGGTTCAGAAAAAAAAAGCTAGTAGAACAT
CTTATGTATTTTTCTGAATGGAGGGAGAACCTAGCTAGTTTCTTCTTTCCTACACATACA
TTTATCTGAAGAATTTTGTCGGATAACGAACGAAAGGTAGGATCATGTTTCCTTTTTTGT
TTTGATTTACAGCGAGGCCGACTCCGCCGCCGTTTGTAAGCTTGTACAACGCGCCCTCAA
ACACTACAACTCCAAAAACCCGGTAGGTACTCTGCCAACAACTCAGGGGACCTAGCGGCT
TCCCAATTCTACAATCTTGGGTTTCGATCCTCTTGGATGTGCATCATGTGCTAGTACTGG
CTTGATGCAGGGCGCCGACTTCCAGTATCCCGCCGACCTGACCACGGAGATGAAGGCCAC
CCATATCAATTTCAGGGAACGTTTCTGGTTCCACGTCGGTTTCTCGGCGCGCCGGAGGAA
TGCCGGCGCCGACGACGAGCTGCACCACTTCTTTGCCGAGCTACGCTTCAATGAGTGGAC
CCGTAGACCAAATGTTCAAACATGCATCATCTTAGGTACCCACTAATCTATTTATAACCT
AACCCTACCAGCTAACCGTGTTGCATATTGTGTTATATATGCAATTCTATCAACCCTAGC
TAATTCTCTGTATGTCGTTCCCTATTTATGTCGACAGAAAAGCCGTTGTGTCGCTTCAGA
AGCAGGTGTGCTTTTTGTACAGATGGTTCTAAGATTTTGCACCCAAGCGATACTGAATTT
GAGTGTGGAAAGGAGGGGCATGAAAAGGAATTCTTCAGCAAGAAGGATATGCTAGTGTGG
CCGATTGATCCTACGAGACATGCATCGCGGACGTAGGATATTTATGGTTTTCTTTGTATT
TTTCATCCTTGTTGTTTAGTTTCCTGGATCATAAGAGAAGTAAATTATTGTCCGAGCTTC
ACCGTGCACAGGATCCTTGCTTTTTGAGCACGAATTACATGATCTTTACAGCAATGTAAT
TATTTGCCGTTGATCTTTCATTTCTTGCCCAGTCCATCATAAGAGCTTGCCTAGTTGATC
TTCCATTATGATGCGCTGAATTATGATGATGTTTGTTCTGGTTGCAGTATAGTGCATGCA
ATGCTTATCTTCAACCTCTCTTGTCATTCATTATGAACTGTCGCCCTTCTGAATTGTTGT
TTTGTGACTTTTGATGACCTGGTATACGATCTACAAGGGGAGGAAGGACTGTATGATTCA
TGGCAACTGTGTCATGAACAACTGTTTTCAAAATAGTAGCTACAGAGGAGGCTTTAAAGT
GATAGAAGGCTAAGGAGGGACTGGTGAAGCAAGTAGTGGTTTAAGCATGTTATTGTCATG
CAGTTTATAACAACTGTGACCCTTTTTTTTTCCGGAACATGGTGTATGACCACATGTTCA
ATGCAGTGAGAAAAGGAGTGAGTGCTAGATCTGAATGATAATTGGGTTCGTAAGTTCAAA
ATATGTGGTGCAAAGCGACTACATCGGGCAAGTTCACGGTATGTTTATTTAGGACTTCAT
GCAGGCAACCAACATGCGCCCATTGTTTTTAAAAGAGAAAGGAGAAGGAAAAAAAACTCA
AGAAAACTTCAATGGAATACAGAATTTTAATTCGGCGCAAAGGTTCAACGAGATCGCTCT
ATTATTCACACTGAGAATTCAATACAGTACCATTATTGTTCTCACTGAGAATTCAGTAAA
TTTTGTCACAACAGATTATGCCTTAGGATAGCTCCATTATTGTTCTCAAGTGAGAATCCA
GTAAATTTTGTCACGACAGATTGTGCCTTAGAATAGATCCATTATTGTTCTCACTGGGAA
TTCAGTTAATTACTATTATGTCGCAACAGATTGTGCCTTTGGACTGCAGAACCAGCACAC
GTACATTCTCACAGTGGACAGGTCTCCAAGCACTTCAACTCCGAGTTGAACCTGTAAACT
TGACCTGGGGAGGTACTGATCATGGCAGAGCGGTCGCCATAGTGGACCCTCGCAAGCGAA
TTCCCGCTGCTGCCAGACCATACAAGCGCTTCATGCAGGCTACCTTCTTTCCAGCAGATG
TTGACCGTCACCCCGCCTCGGGCCCTCAGACCTTTGACACTGCCGTGGGGCCACTTGTTG
CGGGGCAGAGCAGGGAGCAGGTACAGATCACTCCCGGTGCTCTGCACAAGCATTTCGCAC
AATGCAGCTGGGAATCTGTAAGAGAATACACCCATTGTGATGTTTGCGAATCGATCGTGC
AATTAAGTAGCACGGCCACTATTGTTAAACCTCTTTTAAGTGGTTAACAGTTAACAGCTT
AGAGTCACCACGGGGTCATGCCTACTGCCTTACTGGCTGTGGTGAATTGGATGGTTTTGT
CAAATGGAGCTGTAACTTCGTCTCTCACAATTCAACAAATCGTACTATGGTAAACAGGTT
GGATCGAAATGATTGATTAGTCTGAAGATGATCTGGCTTACCCGAAATTTGCATCAATTT
GGAATGGTGGATGCGCCGTGAACAAATTGCTGTATAGACCTCCTTCCTTATCACGCTCGT
GATTCGGATCTATCAAAGTGATTAGCTGCAGAATCATTTTGTATGCATGCTCACTGTTGT
GAAGATGAGCCCACAGGGCCATCTTCCATGAAGTAGACCACCCAGGGCCTTTATCACCTA
CACAACAGAAGAACTCAGTGCCAAGCAGAAAATGCAGAGAAAGTGATAGGTTACAGCCCA
TCCTTGACAGTAAACGCAATAAATTTGACATTCTTAACAGTGCCATGCGATTGCTGAAAA
TAAAAAAATATGCGTTACTTTTCAGATCAAACTGAAAGAGGAGAAAAAGGAATATAACAA
CTGGTCATGGAAGCAAACTGCATAAGAAAAAATCAACTTAATAATACCACCAGACTGTTT
GCCATTTGAAACAAAATGTCTGTGGGAACAGAAACCTTTGTAAGCAGTTTAAGGAATTCT
GACAACATGGACAGAAATAACTTCAACATATTATAAGGAACACAAACAACACTAAATTAT
CCTCCTGGAACAAGATTAGTGCTTATTTCCGTTTTACACGAGAACAACAGTAGTTGATCC
AATCCTATTATACCTTGTTATCCTTCTACTACGAAATTGTCGAGTGCCCAAGCTGATGCC
AGTGTGCACAAGTGTATAACTAACATCTGTTTTTAAGAGGTTCTCAAGTCGCTGTGAGTA
GTTTGTATTTTTGCTCTACTGAAACAATTGTGTCTATACATATACTGCTTTTGAGAACGC
GGTTACAGTATGTCACTGAATGGCCTTCCTCCTTTTTTTCCTTTTTCTTTTGTGTTATAT
GCCCACTCCTCTTATCTTTAACAGTCAACCCTCAAAACCCAAAAAAGGCTGAGATCAGCA
AGAGGGAGCTTATGCAAGACTGAGTAGCCATCACGGAAGGAATCTCAGGAGGTCATCATC
TAACTATAAGTTCTTTGAGCTCATAATTTAATTTGAAACAAACCTAAACTAAAGACTGAT
AACTTCAAACGGGGATCAAATTCTAATACTGCCCTTTTGATATGCAAAAAAGGTACCTCT
TTTATAAAGAGTATTGGCAACAGCCTTGCAGAGGTCAGGTGTTTGCTCAAGTGTCATGGT
ATGCCCAGGATAAAGACCAAACAGATGAGATACATGTCTGTGGTGAGGCTCAGCATCCTG
AAAATCTCGTGCCTATGTGTAAAACACAAGTATTAGGAAATTGAACGAGCCAATGCATTC
ACTTGAGAGACAAACAAATAATAGTATATACTGACCCACTCCATGATTGTACCATCTCTA
CCAATTTTTATTGGTGGGAGCCTTGGTAGTGCCGCTTTTATCCTCTGAACCACATCAGTG
CTGGATTTTCCTAAAATCTGATAAGACATATGAATACTTCAAACACATACACATTCAAAT
AAATACATGCTCAAATGCCAAGACTTAACTATAACTCTGGTATATAACGTTTAAATTCTG
CATGCTTCATTCATATTATCACCAAAGTATCTGCATATTCATGAAACCTGTCTCTTTCAA
CAACAGTAAATAGAAATGAAAACTTACATCAGCAGACAGAAGAACAGCTGAGAATACTTC
TCTAATAATTGACATGTCCATAGTTGTTGAATAGCTCACAGATGCTCTTTTGCCATCCGG
AGCAATAAAATAATGCTCTGGGGAAGTAGAAGGATTGGTCTCCAGATAGCCTTCTTGGCC
TTCAATCAACCAGGACAACAGAAAGGAGGCAGATCCTTCCAAAAGTGGATACGCTGTTCT
CTCCAAAAATTCCTGCAAAAAAAGAACAGAACGTCACATCTGATGTAACTTGATCTTGTC
TAGATTACATTTATGTTTCTCCAATTTCCAGAAGGTGAGCTTGCACTTGCGACAAAGCTA
TCAGTGTGTAATTCACCATATAATCACAACATCATTATCCATCAATCAGAACACATGAAA
AAGGTAGATGAACCAACAATCTATTCAACAGGATAGTTAAACACTATTGGCCAGTCATTG
CTGCTAAACATCGTTATCTTTTAGTACAGTTAACCAGTTTGTCTAATCGAAATTTGTTAG
TGCTTGCCTTATCCCTCATATTTGGTTTAAGTCAACATTTTACCATCAATTCTTCAAATA
AGACAGTGTAATCACATAAACATAAAGGGAGATTAGGCTGATAGGCTCCAACATAAGCAA
GCGGTGACAACAATTCTCGTATCTGCCTATGATGTATGATCAAAATCTGTGCTTAAAGGT
GACACAAGAAAGTAAGACATACAAGTAGTGCATGGCATTGCATTCCATGCCCATGTCATC
ACTCACTCTGTCCATTGTAAAACTGTAGTGTTCCCACAGGTGTGTAGCAAGCCATGGCCC
ACCCATTGGCCATAGAGCCCATGAAGGATCACCAGCATCCGGTGATGTTTTTGCCCACAA
GTCTGTGACTTGGTGACTAACCCAGCCACTAACTCCGTAATTCACCTGTCAAGAAAACAT
ATCATTACATCAAGTTCCCATGAAATGCAAGGTTCCAAACTATACTATAAATCCATTTGG
AAAACCTAAACTGAATAAAATAAAATCTAATAATATGTTTAAACACGTCGTAGAATTTGT
CAAGAATCTAATACACACAAACCATTAGATAGATATGTCCAAATGATTCATCAAGAAGAT
GCACAAAGTTGCAATTCTTTATCCTTGAGTGATCAAGGGCAAGTGCCTCTCAAACTTCAA
ATTTTGTATTCACATTTACGTTGTTGCATTAATAGTCAATACTCAATAGCCGATACTCGG
TGACACTAAGAATGAAGTGAGGAAAGACCCTATCATCTAGATATGCTTGTATTGTTGTGG
AGTAAGTGGTGTCGTGGTACTGTAGCATGCAGTATCACGTGGAAATCAGATATTTGAATA
ACTAATCGCCTTGTTAGATTGGTCTGTTTCCATCCTGATATATTCCATGTAGTAGCGACT
GTCGACAGAACGATCTTTGTATTGATATTGGGCCAAAGGGACAGATTATAGACATGTACA
TATGCAATCAAAATCCTATAGAAAGAAGAAACTGCACAGCTAACTATTGCCCCTTGTGCA
AACTGGCAGGCCCCAGGCTTCTAGTAGCATCACTGATACTCCTACGTTGTCAGGCCTCAG
TGATGCTGCTAGGAGTAGGATCCAAGGCTATGGGCCATGGCCACAAGAAATAGTATTCAT
AAAAGTTCAATGCACTAGAAAGTAGAAACATGTTGGAATGCTCAGGAGTATATAGGGTAG
AGAACACACAGTTTCCAGAGACGCTCTTTTATGAAAGCAGACTTACTTTTGCCGTCTTAG
CCCCATTGACCGAAAGGGATCTAATGAAGTCGAATAGTGGGTCTTGGCATTCACTAAGGT
TGCAAGGAAGTGATGGCCAGTAATTCATTTGTAGATTTATATTTGGATGGGGAGCTGCAC
TGGAAAGTGAAAGGAATGACATATTGTTATCAAACTTGGACTGCCAGAAAATAGTGTAAA
TAGGACTATCATCAATGTACTCTCAAATAACTTACATTACAAACATTAATGTATTTGCTG
CAGAAAATTCAGCATTAAGTTGCTATAAATGGCAAGAGAAACAAGTATTACCCACAACAA
AATTTACTTGAATAAAAGATGGATAACCCCTTTAGTAGATTATTGTTCAGAACGCACCAG
AAATTAAGGGAAAATATATTAAATTATCATCTTACTCAAAATTCAAGTTACATTATTTAT
ATAAAGAATCCCAAAACCTATATTTGAGAAATTAATGCGGGAAATTAAAAAAAATTGTGG
CTTTCTTCACATGTATTCACTGTTTTGTCATGCTGTGTCAAAGGAAAAAAATAGCGCGCT
ATTTGAAATAGCGCAACCTTCAAAAAAACGCTATGAAGGAAATAGCGTGCTAATAGCGCG
CTATTTTGCAAAATAGCGTGTCACAAAACATTGTTCAGATTTCAGCATATAGCA