morexGenes - Barley RNA-seq Database

Contig contig_50179

Source Contig contig_50179

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_50179 (6650 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location

Predicted Genes from contig_50179

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_65431	4	1574 bp	MLOC_65431.2	Available	Available	LOC_Os03g60720.1, FRAME:-2, EVALUE:4e-166, 13103.m06667 protein expansin precursor, putative, expressed
MLOC_65430	1	525 bp	MLOC_65430.1	Available	Available	None
MLOC_65432	1	595 bp	MLOC_65432.1	Available	Available	None

CDS Structure of MLOC_65431

CDS Structure of MLOC_65430

CDS Structure of MLOC_65432

Contig Sequence (6650 bp)

>contig_50179 6650 assembly3_WGSMorex_rbca.fasta
AGTCTACGTCGTTTTGTCGACGAAAACTGTAAAAAAACGGTTATTTTTAAGGTTTGAGGG
TTCTACCAGAGAGGCTCTCACTGTGCTACCTCGTGCCTGTGTAGTTTCACTGTAACCCAG
AGTCTGAACCTGTTATCGAGCGAGGGTGGTAGTCTGAAAATGTCGTGCGCATGGTTAAAC
GGATGTATTTGTGGCATTGAATTCTTTGACACTGGAGGTCATGTCGCATGCTGACTGTCG
TGCCTCGTGCCTCTGTGGTCTTCACTGCATCTAACTACTCCTATATATGAAAGGCATATC
CGAGTGGCGTCCCCCAGTGGCTGCCGCCGTGCGTTTTGACCTTGACACATGTGTGGCGTA
TGCGTATGTGATCCTGCCGGGCGTCAGCCGATATCACCGGTGACAGCGACGCTGTCATCG
TCTGTTTGACTCGGGCCCGGCGACGATCTGCAAGCTTGCTTCTGCCTTTCCCGGCGACGA
CATCAGGTCAGACAGGCAACGGCAAGTGGCAGCACGAGGACGGTGCAAACCCATGATGCC
GATGGTGAAAACGGCATGCATGGTCGGTGCCGCGCCATGGCTCGTCCTTGGCGCCATTCC
CGCAAGCGTCCGAACAAAAGCAGCGTCACTCCGAGTTCCTAAAGCGCGCCCTCGCTTTTC
TGCTCCGCTTTCATACGATTTCTCCACGCGTTTTCAGCGATCAGATTCAGCGTCTGCACT
CTCCAAGAGGAGCCGGCAAGACTGATGGCCACGGCGGTGCAGATTTGCTCGATTGAAACT
TACACGCTGATGCACAAGCACATACTAGAATAGAGAGGCGATTGCACATAGCTGATAGAA
CATATATAAATCAGGTCCATGATTGATTAATTGATTGATTGATAAATACTCGTAGTAGAG
TAGAGTAGTGGTAACAGCAGCGTGCCATGGAGACAAAGATGACACGGCACGGGAAGGACA
CCGGAGAAGCAGCAGCTGCGGGCTCCCATCTTTCAGCCGCAGCTTTGCAGCCACTTCAGC
CACCACTCTCCCCACTTCACCCTTCTAATTAAGACTAGACTTTTGCTACCAGTACTAGTA
GTAGTACGTAGTAAGTATGAACCTGCTTGCACCTTGCATCTGCATTCACAGGCCACGCAC
CACCAAGGACGGGAAAAACAACACACCAACCTTGTAATTACTCACTCACTCACTCACTAG
TCGCTAGTATATGTAGTAGTAGTAGCAGTCGTTTATATATGTAAGGCGGGCGGGCGGCCG
TTGCCGGAGAAGAAGATGATGGGATCAGACCCTGAAGTTCTTGCCCTCGAAGGTCTGTCC
GAAGCGCCAGTTGTTGGGGGCGGCGTTCCAGGAGGTGGAGGTGCGGCGGTCGCTAGCGGT
GACGCGGAAGGAGAGCGTCTGGCCGACGAGGATGGCGTTGGACTGCCAGTTCTGGCCCCA
GTTGCGCGACATGGGCATCCACCCGGTGCTGGACCCCTTCACGCTGGCCCGCACCAGGTC
CCCCGCCCCCGCCACGTTTGTGATCAGCACCAGGTTGAAGTACCTGAACCCGTTTATCGT
GAACCGCACCCCTCCCGACTTCCGGCACGCCACCCTGCAACACACACGTTAGCCAAGCCA
TCAGCACAGCACAGCACACAGAGACACACAGATGCACAAACCAACTACTGCTCCTGAATG
AATATTAAAGGCTAAACGTGACGAAAACAGTGTGCCCACTTTGATTGAGACGGAGACGGA
GACGAAAGAGACGTCGAAAGCACATGACGCCGCCGGGCCGGGGAGCGCCGTTTCCAGCTT
CGTTCCAAGGCCGCTTTTACTCGTAGCAGGTAGCACCACGCCACGAACGGGAGTAATGGC
GGCTGGCCGGCCGTCGTGGTGCGATCTTCGCTACTGGTACTACTCCGATCATACTACCAC
GTTCCGCTTTTATTATGGCAATGCATGCGTCCGGTCCCGGTGCACATTCGCAGCCCCATG
TTCATCGCTATCCCCTCCCGGCCGTATACATTCAGAAACGAAATATTTCATGCTCTGCTG
CTGCTACTGCTGCTAGAAGCACCGAGATTTATGGGGATTTATCGCCATGCCGTGCCTCCT
CTATACTATTCCACGTACTACGTGTCACCGATATCTACCTCAATTTTTATTTTTTGGACG
AAAAAGAAACAGCCCATGGTACCGTATCAATTTCTACAGTACAGGATAATATTTAGCAAT
GAATGAATGTCGATATTATCCATTAAGTTTTTTTATTATTATTCCCATGATAGTACGGTG
GACATGACGGCGAGGATAAATAAAGAGAAATTAATTGACGGAACCCGTCCGGATTTCTTT
CTCTTTTTCCTGTGGACGGTGCAGGACGAGAGCACCGCGTCTTAAAAGACGCGAGGAAAA
AGGAATCGTTGTTCTGCGCCGGGTACAGAGGAGCGCAGTCCCTCCCATTGGCCGAAAAAA
AAAAAAGAACAGAAAAATGGATTCAACCAAGACGAATGTTTTTTTTTTACTATACTATGA
CCACCAAGAAACAGCATCCCATTGACTATGGACGCCGGAGCAGTAAAAAAATTAGGCAAG
CGAGAGGATAAGAAGAAGGAAAGTTGGCAGGAGATTTGGGAGCGAGGTCGGGGTTACCGG
CGGTAGGAGACGGGGACGATGCCGGCGCGGTACTGGGCCATGTGGAGGAACATGGGCATG
GCGAGGTCGAAGTGGGGGCGGGGAGGGTTGCACCAGCCGCCGTCGTCGGAGGGGAGCGCG
TAGTTGGGCGGGCAGAAGTTGGTGGCGGTGACGACGATGGACGGCTTCCCCGGGAGGCAC
CACGCCCAGCCCGGCTGGTTCACGCACCGGATCTCGAAGCACGCGCCGCAGCTCTGCCCC
TCGTTGAACAGCGCCGTGCTCAGCGCCGCGTTATTCACCCCGTACCCCTGGCTGTACAGG
TTCCCGTACCCGCACGCCCCGCCTGCCACCCCACACCATCATCAACAACGCACAGATCAG
ATCGGTTTTAGTGGACGTCATCGCCGGCGTATCCGGAGCGGAAAGCGTACCCATGGTGCC
GGAGGCGTCGCTGCCGCCGTAGAAGGTGGCGTGCGCGCTCTGCCAGTCGCCGCCGGTGTA
CACGCCGGGCACGCGCGCCGCGGCGGGGGACGACAGCAGCAGCAGCGCCGCGAGGAGGGC
GAGCGGCGGCATTGCGGCGGCCATCGTCGCTCCGGGCGAACGCGCGTGCTCGCGGTGAGA
GAGCAGGTGGCGGCGAGAAGGCGATTGGACGGCGGAGGCGCTGGGGAGTGGTGTGGGGGG
TTGAAGTTGGGGAGTGGGAGAGAGCGGGGCGGGTATTTATGGAGTGGCGGGAGGGAGACC
AAATAATGGCGCCGAGGGGAGGGTGAAGAAAAGAAGATGTACACAGTCGAGCGTTTCTTC
TCCGTTGGGAGATGCGTGATTATTGCTGGTTTTAGCCATTGATGGCGCAGGCCTGGCCGG
CTCCGTGCCGTGGCCGAGCTCTGATGGGAAAGCACCGTGGACAGTTGGGAGGGGCCTCGC
CCTTTTTCATTTTCTTTCTTCCTTCCTCCCTCCCCTGCCCCTGCTACCTGCCACTGTTCG
GGCTTCGGTGCAGTACTCTCTGCTTCACAGCGCCGGCCATGCCAGAGCATGGTAAAAATG
TGATTTCACCACTAGTAGTACAATTGCTTAATAAGTTGCTGGTGCAAATCCGGATTATTT
GCTGCATTCAAGTACAAAATCCGGGCGCATGATCTCTGCGATCCCAATCTACAAAAAGAC
CAATTGCAGACCTGCTTGCAGTCTTGCAGGAGTACTGCTGTAATTGATCGCGGTAAATGT
TGGATCTACTACTACTGCGATTGATTGCCAGCTATGATTGTGTCGTCCGGGGTGGGCCAA
ATCGACAAATTTGATCCCTGGACACAAAAAATTCGTAAACTAAACTTTGTCTGAAATTTT
TTCCTTCAGCTGATCCTTTTGTGTGACGTCCGACACTTAGACGACGCACTATATTGTGTG
ACGTCTAAGCCATAGGCGCCACACTACACTGTGTGACGCCTAAGCCGTAGGCGCCACACC
CCCGTCCACGCTGGCGTTCGACCCCACCACATCTCCCGGTAGTGTGACGCCTAAGCCGCA
GACGTCGCACTGCCACTTAAATTTTTGGCCGCCTACTGGCTATTGCCGAGACGTCTCTAA
ACAGGACCCGTGGAATTGATCTGACGAGGTGCTTCCCTTTTTAATTGCATATAATCATAT
GAGACAGATGCAGAGGATGATCATAACAGTTACAAAAAAGATTTGTTATTACAGGGGAAA
AAAATTACAGGAAAAGAAACTAACAAAGCATTTTCTGAAAGAACCATTGTTCTTCATGTC
CATCTCGATGACTTTATCGATCAGCTTCCTGTCCCACGCACATACTCCCGGTGTGCATCA
GGTATTTCCATGCCACGGACATCGAGCGAGTCTAGGTAAAGAATCTGTATTTTGCAAAAT
AGAATAAAATATGTTAAACTAAATTTAGTTTGCAGATAAAATAAATCTGTAGCAATCATT
CATATTCCTTTCTTTCATGAATCATGGTGCAGAATGCTGACCACGAGATAGAAAAGGCAG
CCCCCTGCGCTGTTCTTCTTGCCAAGGGAAGAAACGCCCTTCTCGAGCTGCTCCACAACG
AATGCTGACCACGAGAGCACGAGCATTATGAAAAGTCCGGAGGAAGTGCTCGTCCGCTGA
CTTCATCAGCTTGATGGACTTCTCCAAGCTCGTCATGGACGCCGTGCTTGTCCAGCACGG
AGGCGATGCTCTCGTTGTCCAGCCCGTACACGACGTCGTGGCCGCGGTTCGGGGATGCCG
AGCACCCGGTGCACGCTGTTGACGGTGACGGGAATAGCCACAGATTTAAGTGGCAGTGTG
ACGCATGCGGCTTAGGCGTCACACTGTCACGGGTGCGGTGGGGCCAGAACCAAGCGTGCA
CGCGGGTGCGGCTTAGGCGTCATAGTATAGTGTGACGCCTAAGTGTCAGGCATCACATAA
AAGGGTCAGTTGAGTGATTTTTTTTAAACGTAGTTCAGTTTATGAAATCCTCTTGCTTCT
GGGTTAAATTTGTCAATTTTGACTCCGGGGTGAGGAGCAGAGAGAGCGGACGGCCGTGAT
CACGGCGGGAAGATACGGCGATATCTGAAGGAAGGGCGATTGGACGAGAGGGTGGGGGCG
AGCGCGGGGAGACCAAAAGCGGCGCACGGCTGTGGCATGTTGGTAGGCAATGGATGGAGC
ACGGCTGTCCGCTTCCGCCCCCCTTTGCTTCCATCGCAAGTTGTGCCATCCCTTCTCGTT
CCCCTGGTCCTCCCCCGGCCCCGCCGGTGGCTGACGCCGCCGGTCTGGTCGGTGAGCGAG
CGGCGAACTATAACCCCGATCCATCCATCGGATGCAGCTTTCACGTACGTACTGCTCTTT
AATCTCGTTGCAGCCGGGCCTTTTGGCTTTCGCTTTCGCTTTCGCCCGGCCGGCCACCCG
CTGGTAGAATAGATAGAAGCAGTGCTGTTGAAGTTCCGATGCGCCGGCGCCATGTCTGGT
TTCGAAATTCGAATGAAAGGCAGGCGCCCGCCCGCCGGCCGGCGAGAAATACGGCCATGC
GCTTTCGTGATTCCGTCCGTCGTCGGTATGGTCTATGGTGGGATGCCCGTGGCCGTGCCG
TGCTATGCACCGCCTTCATTGTATCGTATGACTGTTGGTGTACCGTATGCGTACGTGGGA
GTTTTACTCGGGCGAGCTGCGTGGCGTGTGGACGAGTGATGGCATGCATGCATGTGTGCT
TGGACAAAACCATGAGCGCGCCATCATGCTGTCTGTGATGCTCGTATACCAGTACTACTG
TATGTTATCCACTTATCCTCCCCCGTGAGAATTTTACGTATTTGTTTGTACTTTTTAGCG
CTGCACAATCTGGTTTTTGTGGGAGCAGTGTTGCTCAATCATCAGGCCAGTCAGTAAAAA
ACTTCGATTGTTTTTTACCTACTACTGGCACGTTGGTGTCCTTCCTTTCCACGCGAATAT
ATCTTGAACAAATAATTGTCGTGCGTACGTGTGTTCGTGCTGACTGCAAAGTCTGCAACG
TGTTCCCGGCAGCCCATGGAACCAGATGAGATGCCACGCTGGCATGGAAGGACCTTTGTC
GCGCCCCCTGCCATTTTATGTTTTGCGAAATGGGAGCGCCTAGGCCTTATTCGACTGAGA
AAACTGTTAGGAATAAATTAATTAGATTAATTAAAGGGTTAATCCCTGCTATGTCGGTTG
CTACTTGTAGCAACTGCCTCTTTGTAACCGCTTTTGTACAGGGTATATATACCCTCAAAT
TCATCAATGAAAGTAACTGTCCCGTCATTTGTTCCCTTCTCTCTCGTTTTACTTCCACGC
GTTATCAGCACGCTCTCCGTAAAGCCACCGTCAGCCTCATGCAGCGACACGGAAGAGCAG
CAGCGGCGACCCGCAGCGACGCCCCCAGACGGAGGAAGCGGTCCCCGTCTTGCATCTGGG
GCAGATCGCTAGCACTCGAGGCCACTAGCCTCGGCAAGCCCTCTGCAGTGATTCCTTGGT
CACGTCGCTAGGCGAGGCACCTGCGTTAATCAGCGAAATTCTACAGAGCG