| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
No map location |  |
Predicted Genes from contig_50116
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_65419 |
10 |
6142 bp |
MLOC_65419.8 |
Available |
Available |
LOC_Os08g14850.1, FRAME:-3, EVALUE:0.0, 13108.m01586 protein resistance protein, putative, expressed |
| MLOC_65390 |
1 |
2124 bp |
MLOC_65390.1 |
Available |
Available |
LOC_Os01g20980.1, FRAME:+3, EVALUE:0.0, 13101.m02230 protein pectinesterase, putative, expressed |
| MLOC_65434 |
6 |
2360 bp |
MLOC_65434.2 |
Available |
Available |
LOC_Os03g59450.1, FRAME:-3, EVALUE:0.0, 13103.m06526 protein transporter-related, putative, expressed |
CDS Structure of MLOC_65419
CDS Structure of MLOC_65390
CDS Structure of MLOC_65434
Contig Sequence (6803 bp)
>contig_50116 6803 assembly3_WGSMorex_rbca.fasta
ACAAAGGTGTCACAGAACCCCACTTTCANNNNTAAAGCTTTCCTCTTATATTTGCAATAC
CCAGATTGCAATCTTAGTTTCTTGCTTGTTCTGTTTGCGTGCAGGAAACAGACCCTCNNN
NNNNNGTTGATCGTGCTCCGACGTGGTCAATGATCTCTAGGAGTTGGTTTAGCTATTACT
AAGGCACGACGTCCTCACACGTTCNNNNNNNNNNNNNNNNNNNNNNNNCCACCAAAATGA
TAACCACCATCTCATCGAAAGACATGGACAACTTTGCCTCTATCAAATAGGTTTAATATC
CTGGATCAGAAGCCATTCCACCCTTACCCTACCCAGGTCAAGCTTGTTCTTGCATGTTGC
ATATTTACAACTGGATCCTGCAATGGAGAATTGATGAACTAGTGCCGGAGGAGGAACTTG
TGACTCTTGATGAGGTGATCATTTTCGACCATGGTGTGAAGGCGTTTGACAATGAAGCAT
GAAAGAATAAAATGTTGGAATAGACTCAGGTAATGTGAGATAACAAAGGTCAGACAGGGA
TATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGCAGCAACACAAGAAGAAGAA
GAAGAAGAAGAAAAAGGCAGCAACACAAGAGAAGAAGAAAAAGCAGCAGAACAACAAGAG
GAAGAGGAAGAGGAGGAGGATGAACTTCCACCCAGTTAGAATCGTTAAAATTTCCTAAAT
TCAGCCATATTAACTTTTAATAACTTGTACTGGTATTTGCTAGTAGTTAGGATAGACCGC
TATTTGTTTCCTAGATAGAACAAGACAACGTTTGTATGCGTGGTAAGTCATCACTAGCAA
AAAGTGATGATCTCATCTTTAGCCGTTTGCAACCAAACAACATGTTGTTTGTCTAACAAC
AACGACGCAAACAACCAAACATCGTGATAACTAATTGCTTTTTTCAGGCACGAAGCCTAA
TGCAGGCAACCAAACTACATGTAGGCGTTGATTTTAGTCTGAATTAACTCAGATAGACCC
GACCGGGACAAGTATACAAAATGCCCTGCAACGAAAATGCGAACCAAACGCGTCCTTGTG
TTTCCATGGACTAATAAGTTGATCGGCGACGGGCAGCTAGCTAGGAATGCTTGGCATGGC
AGCTGCCATTTCGTCCAAAGGGGTAGCCGCGGAAACAAGTGAAAAACTCTAGTAGCAGTA
CACGGTGAAGGAAGAATTTCAGTGTTGAAGTATGCACAGCACAGTCGCCTCGTCCACCAC
TAGATTTCTAAGACCGCATGCTGTCGAGTGTCGAGTGCTGCTGGGGTTTGATTTCGTGCA
CTACAAATGTCTGCAATCCTAGCTACTGGTAGCATGGCGGAATAATAATAAACCATACAC
AAATTGTAGACCACACCACTCTCTTCTTCTTCTTCTTCTTTCTTGGCGATCAGAAACTGT
GCATCACTGGAGGCCACCTAATCCGTGGCCCGAACGACTCAATTCAGTCTAGTTAAACAC
ATGGTCGACGCCATAGCTAGCGTTCCAGTAGGATCCATGCATGCTCGATAGCTACTAGCA
CGAGTTACTTAGCCACCGGCCGGGCGCCAACACGTCCACTAAATCCACTAGCTAGGGCGT
CGGCCCTATTCATTCCATCTGCTTAATTAGTGGTTGCCTAACTGCGTGGAACGCACGATC
GACGCACAACAGAAACAAAATGTGATTCTTGTGGCTGTAAAATCTCAACACTCTCGCGTT
AGTAGGTACACTGGATGTGTGGATATCGTTGTTTCTTGATCAGCACACGGTGGAGTTCGT
TAGGTTCAGCTTCGCACTAAGCAAAGGGGGTTTAGTGTTTTTTGACGGCGCCACCAAATC
TTCGAGCAAGGTGTTTTCTAGTACGAGAAAGCCATCTAGGATCCAAGGATACTGACTTGC
CGAGTCAAGGAAGAGAGTCTATGGTCGCATGTATGTTCATTAAGAAACCAAATATTTTCA
AAAAGTACATTCAAATTAATCAGATGAAAAAAACCCTATAAAAGTATAGTTTCTACTAGA
AGATTAAAACAATTTTCTGTAACATCCCAGAGTTGTAACATCCGAGAGTTTGTAAACCAG
ATATTATTGCAACATATACATATAATAATTCAATTACGCATTTTCATACCATCATGCCAT
TTAAAACTTTGACTCAAATAACTATTGTGTTAAATGTCAAATCTCGAATTTGAGCCTTCT
TTATATTTTATTTAAATGCCTTTTTATTTACTTCCAAAGCTCTCCAACAAAACCTCATCC
CTTTTCTACTCAATGCTTGGCTCCCAAACTCTGCCCATAATTTTCATATCATTTTCCCAA
TCTCCACCAAAAATTTCAGCCTTTTTGGACACTCCTACCTCCTAAGTATAGTTCAAACTT
ATTTGAAGATAAAATGGTTCACAAAAAAAGAGAGTTTATGAATGGTGAAGTTTCTTTCTG
CGTGTGTGTGCTTGGACAAATATTAACTGAATTTTGACACCACACCCATTTTACATTTTG
ATCCTAGTCTATTCTTTTTATTTTGGTATCCCCGTCATCAGGGATATATCACCCATCCAT
ATAGGATTAACACCCATTACACATTCCCCACTAGTAAACACACACATTGCACATGTTCGA
TGAATCACCATACATACATACATGTTGTAATTAGTTACTCATAATGCACATATATTTATA
CTATCATATAAGAAGAAGTGTCATTTGAATCCTACCAAACCAACCCATACAAATGTCGCC
TCCCCCGTGTAATGCATCACATGCATCTCCAGCTCGAGGGTTTGACTTGAGCAGTGCTTT
CTTTTTTCCATGGGTCAGTCGTCACCGCCACTCCATCTATCAACGTCCAAACGCGTTTCT
TAGGGACCGCAAAGACCTGCCAACCTTCCAAAAACGCCATGAATCCTACCTTCACAGGCT
TATATAAGGGACACAATCGCCATCTCAAGCAGGACGCCACACTGCACACTCGATCACTTG
ACAGCCTCGATCGACACTTGCTCAACACAGCCTGAGCGCGTTAACCAATCATGGCGATGG
CGGCATACCACCCTGCCGCGGCGCTCTCCTTCCTCCTCGTGCTCTCACTCTTCCTCCTGG
CCCGCTCCGACCCGCCACCATCCACGCCCGTACCGCCGGCCACGGCGTGCAACGACACGA
CGGACCCTACATTCTGCCGGTCCGTGCTCCCGGCCAACGGCACCAACAGCCTCTACACCT
ACGGCCGCTTCTCCGCCGCCAGGTCCCTCTCCAACGCCAATAGGTTCCTCGGCCTCGTCA
ACCGGTACCTCGCCCGCGGCAGCCTCTCCGACGCCGCGGTCGCCGCGCTGCAGGACTGCC
AGCTCCTCTCCGGGCTCAACATCGACTTCCTCTCCGCCGCGGGCGCCACGCTGAACACGA
CCAAGTCGACGCTCCTCGACCCGCAGGCCGAGGATGTGCAGACGCTGCTGTCGGCAATCC
TGACCAACCAGCAGACGTGCGCCGACGGCCTGCAGGCCGCCGCGTCGGCGTGGTCCGTGC
GCAGCGGGCTCGCCGTGCCCATGGCCAACAGCACCAAGCTCTACAGCATCTCGCTGTCGC
TCTTCACCCGGGCGTGGGTGCCTCGCGGCAAGGGCAAGAAGCCGAGGGCGTCGTCGTCCA
CCAAGCCGCCTCGCCAGCACGGGAGGGGGCTGTTCGACGCCACCGACGACGAGATGGTGC
GCAGGATGGCGCTCGAGGGGGCCGCTGCGGCGGTGTCTGTGGCCGGCGCGGTCACCGTGG
ACCAGAGCGGCGCGGGGAACTACACGACCGTCGCGGACGCCGTGGCGGCGGCGCCGAGCA
ACCTTGGCGCGAGCAGCGGGTACTTCGTGATACACGTGGCCGCGGGCGTGTACGAGGAGA
ATGTGGCGGTGCCCAAGAACAAGAAGTATGTCATGATGGTCGGCGACGGCATCGGCCAGA
CGGTGATCACCGGCAACCGGAGCGTGGTCGACGGCTGGACCACCTTCAACTCCGCCACGT
TCGGTGAGTTGCTCAAATTTAGTTTCCTTTTTCTTTACTCTGCTTTTGGCTTCGTTTGAA
AGTTTGGCCGTGCTATTTCTACAGTACTCCTACATGGTTGAAATATACCTACCATTGACA
TGACACGACTACCCAACACTTTCTAGAACTTCTATTCTATTGTGCGCTTGACTACACTTT
GGTTACTGCCTTGCATTTGCATGATGAACATGCTGCGCGCGTCGCGCCTTACATTTCGCC
CTAACTTTCAAGATTCGGGCATGCATGCAGCTGTGCTCGGGCAAGGGTTCGTGGCGGTGA
ACATGACGTTCCGCAACACGGCGGGGCCGGCGAAGCACCAGGCGGTGGCGCTCCGGAGCG
GCGCGGACCTGTCGACGTTCTACCAGTGCAGCTTCGAGGGGTACCAGGACACGCTCTACA
CCCACTCCCTCCGCCAGTTCTACCGCGCGTGCGACGTCTACGGCACCGTCGACTACGTCT
TCGGCAACGCCGCCGTCGTGTTCCAGGACTGCACGCTCTACAACCGGCTCCCGATGGCCG
GCCAGAGCAACACCGTCACGGCGCAGGGCCGCTCCGACCCGAACCAGAACACGGGCACCA
CCATCCAGGGCTGCTCCATCGTGGCCGCGCCGGAGCTCGCCGCCAACACGGCCTTCGCCA
CCGCCACCTACCTGGGGAGGCCGTGGAAGATGTACTCGCGCACGGTGATCATGCAGTCGG
ACGTGGCCGGGATCGTCGACCCGGCGGGGTGGATGCCGTGGAGCGGCGACTTCGCGCTCA
GCACGCTCTACTACGCCGAGTACGACAACTCCGGGGCTGGGTCGGACACGAGCAGGAGGG
TGAACTGGCCAGGCTACCATGTGCTCAACAGCACCGTCGACGCCGGCAACTTCACCGTCG
CCAACATGGTGCTCGGTGACTTCTGGCTGCCGCAAACCGGCGTGCCTTTCACCGTCGGGC
TCAACTGATCCACGATCTGACTTGGAGCACCATATATTACAACATGTGCAACACATATAT
GTTGAAATAGCTAGGTATATATACAGAGAATAAGGTTCAAAAGATATATACCATGCATGG
AAGCAAATGCTTTAACTCATGGGTCTTTCAATTCTTACGTGTAGAATTGACAGATTCCAA
CTTATAACTTATGGGTAGTAGAATGACATTTTACTCACATTTTCCTTGTTCGTCCGATTA
CAATCTTGCTCCTGGTTTTGTCTTCTGTTGAACACAAGTGACTGAAAATAATGTAAGTTT
CAGCCAATCTGTCATTTGTGCCTGCTTTTTCGAATCTGCGCTAAACGTGGGAAGAACTCA
AAGTTTGAGTCGATCTGTTGCATGTGGTCAATGTTCTGAATTTGTGTTGGGATATCCTCT
TCATGTGGGCTGTAAGGAGATGATCATTTGAGCAGAGGAGAAGCCAGCAATATGGCATGG
TTTGGCGTACGCCATACCTAAACCATGCTGTACATACTAGGTATATGTACTACTAACCCA
ATACATATGAGAAAACTCGAGGTGAGTTGTGCTTGCCTGCTGGGCTAGGACGTCTGGTTG
GTTATCGGCCGTGCTGGTAGCGTGACGTTGTAGGCTTTTTTACTTTGACTGTACGCCTTG
CGGTGACGACGCAGCTACTGCTCCTCTAGCTATGATCGTGCACGATGGAGGCGGCAAGGC
ACACTGATGGCGCCACGGCCAGGCCATGCAGCCCGCAGCCCGCAAGGGCGCAGGGCACTA
CAGCCACTGAGTAGAGAGCGGCAGGCCGCGAGCATCTTCTGGTGGCCGCGACCAGTAGCA
GTGACCAGCGAACGAGGCCGTTAGGGTATTTTTGTTGTCGTCAACTGAAATAAGCTATGC
TAATCTACTTGGCAGTCTATTCTGGTGTTCTCCCATTGTTGAATGACAAATTGATTAGTT
ACCTCTTGTGAATTTGTTGTACAGATTCAAGGATTGTTTTTGCCAAAGCCAGCCAGATCC
ATCTTTGAACGTAACTGTTGGACAATGAGAAGAAGAGCCCCAAAATCAAGAGGGTGTGGG
GATTGAAGTTCCAGTATCTTTCCTAAAACAAGAATAGCTTTCTAGAGATGCTTGATTTGT
ACAAAGCTAGAAAGGAGGAAGTGGAGATTACGTTTGATGAGCTATGCGCACAAAATGCCC
AAATAAATCCTTGAACAATTCAAAAAGAACCTGCAAAAACTTGTCCAATGGTTGGGTCAA
CGACTTGATGGTTTGCTACATCGAGAGAGTGTTATTTAAAGGAATTGATGTTGCTGAAAT
TAAGAAAAAAATCAGACCAAACCAAGAAGAATGCCATTGTCACATTCTACTTCATGAAAG
TAAGCTTCATTATAGGTATGCATTCTATCTTCACCTTTCATAATGTGCTTTCTATGATTC
TATCCTTCTAGTTACTAGTTCACGAGTTATATTTGTTATTATATTCCATAGATCATCTGT
GTGTCCATCTAGTTTATATGGACGATAAATCGGTAACCGGTCATTCATGTAATCTTCATC
TAGTGAGGTATTTTGAGTGTCAATACTAAGCTTATGGATTTCTTTTGTATTTTCTGAACA
TAAGGAATACATGGTTTTCTCCTTCATAAAATTCGCCACACCTAAAAACTATTCCTGGCT
TCGCCACTTCATTTGATGCGTCAGCCCAAAAAAGGTGCACAAGCCCACTACCCATTAGGG
TTATGNNCTAGGGTCATTTTGGTCTTTGCACATGAGTGGATGGGGATGCTTTACCCTCCA
TCCAGCAGCCCCCCCCCCCCCCC
