Map Locations of contig_50062 (10747 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_50062

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_65342 2 1256 bp AK361845 Available Available None
MLOC_65344 1 226 bp None Available Available None
MLOC_65343 3 2922 bp AK363697 Available Available None





CDS Structure of MLOC_65342






CDS Structure of MLOC_65344






CDS Structure of MLOC_65343






Contig Sequence (10747 bp)

>contig_50062 10747 assembly3_WGSMorex_rbca.fasta
ACTCAAAAATGACTCAACTTTGTACTAAAGTTAGTGTAAATTTAAGTCAATTTTGAGTCA
CTTATTTTGGGACGGAGGGGGTATATTATTTGTTATATATGACTCTTATTAAATTGGTCA
AATTGACGATCTAGATATATGTGTCGGACTTGTAAACTGAGACACAGGGAGTAGTTGAGG
AATATACCTTTCAACGATTAATCCCATCTTCCTAGATTGTGACAAGTGGCGCACTATATG
CGTGCCATTTATCGCAACCTGGAAGTTTTTCCTTTTTTCTTAGATTCATATTTTAAAAAT
GTTTTATTTTCTAAACCATGCGTTCAAATCCTGAACTGTTTTCACCGTTGGGTTTATCGC
GTTGAGATTTTTAAAACTAGATCCCATGTTGATAAGTTTTGACAAACTTTTTTTTCACGA
AAAAACCGGACAAAACAACTGCCGTGCCTCTCGCGATAACAAAATCGTGCCTCTCGCGAA
AGCAAAACCGTCTCTCTCACGGAAAAAAGAAAGAACAGAAAAACGTTTTTCTCCTTTCCG
AAAGGCACGGGTGTGCCTCTCGCGATAGCAAAACCGTGTCTCTCGCGGAAGCAAAATCGT
GCCTCTCATGAAAAAAAGAAAGTGAGAAAGCAAAAAACACGTTTTTTATTTTCGAGAGGC
ACGGATAGCAAAACCGTGCCTCTGGCAGAAAAAAGAACAGAAAACGCGTTTTCCCCTTTT
CTGATCGTGCCTCTCACGATAACAAAACCGTGTCTCTCGCAAAAAGAGAGAGAGAGAGAG
CAGAAAATGGGTTTTCCCCCTTTCCGAGAGGCACGGCCGTGTCTCTCGCGAGAAAAGAGA
GCAAAAAATGCGTTTTTTTTCTCTTTTCGAAAGGCACGGCCATGCGGAAAAAATTAATCT
AAAAAATCAAAAACACGTACTAAAAAATAAAAAAAGTAAAATACGAACAGAACGCTCAGA
ACACGACACGTGGCGATGGCTAAGAACGCATCAAGTGACGACGCGCGAGAGTGATTGTTG
GGAGGCTCGAGTGCTGGCTAACTAGTTGTTTCATAGGCTTTACGAGCTTACATGGATAAT
ACAAAGATCATGTGGGCTTAATGTACTTGTGTTTTACGCAGATCTCGACGAAGCGCCGGC
CCATATGATACACGAGAGGGGTTTGGGGTTGGTGGTGGAACCCTGGAGGCAGCAACTGAA
GAGAAATATTAGCGGAGCATCCGAGGGGAGGGGATAATAAACAACCAATCGAGGAGCTCC
GCCTATCTCTTCCTCCTCTTCCTCCTCCCCTACCCCAACACATCGAAACACCTGAACGGC
GGGATGGAAGGGATGGGGCAGAAGAGGCGCCCGCTGGTGGTGATGGCCTCCTCGTCCACT
ACGGCAGCGCAGTCCGCGTCGCGGGGCGGGGCCAACCCGCTGGCCGAGCTGACCGACCGC
TTCAGGTCGCTGGAGGTCGGGGTGCGCGAGTGGATGGCGAAGCAGCCCACCCACATCGAG
GCCGCCGTCACCACGGCGTTCGGGGCTGTGCAGGGCGGCGCGCTCGGCGGGCTCATGGGC
ACGTTCGCGCCCGAAGGAGGGGCGGGGCTCCCCGTGCCGCAGCCGCCTCCCGGTCTCGAC
CCCAAGGCCATGGCCACCTTCAAGCAAGCGCAGGTCTCCTCCTCGCCCATGTATACCAGT
CCTTTCGTTACAGATTTAGATGGAGACCATCATTTTCGGTTTATTTTCTGGGATATTTAC
TTACAACATAAAGCAATTGGTCCCTTGTTCACACAATACTTGAAACGTCGAGTGTCAAGG
TTCTTTTGTTCGACTTAAGACTGGATTTGTCATTTGGAATCGGACCAACTTTGTTAAAAT
CAAATCGAGATAGCTAGTACGCATGTGATGTCTTTTCCTTTTCGTAGACATCAATTACTT
TTCCTTTCTCGTTTCTTAAAGCAATCATCACTCTTCCTTTAGTTTTAGTGCAGCAAAGTC
TTTATTGGTCCTCAAGGCTGTCTGACATATACTAGAAACTAAGAACATGCAGAGGCAACG
ATTACATTCTATCGATCATGTACATTCTATCGATCATGTACTAAGTACAACATTATCCTG
GTTGATGCAAATCCAATCATCCTCTAATCCTTCAGGTTAACGGTATCTTTTTTCAATTAT
TATAGGCTTTGGCAGGCGGGCCACTGGTGCAAGCTCGAAATTTTGCAGTCATGACTGGTG
CAAATGCAGGCATATCTTGTGTTATGAGAAGGGTACGAGGAGTGGAGGATCTCCAGGGCA
GGTGAGGGTTCATAAGTTCTTGTTTCTTGTTATGTGAATATTTGCAAGTAACAGGAAGCC
AACAACACATTTGATAGAATAGGTGCATCTTATTCTGTTCACATAAGATGCTCTCCTTTT
ATTTCTTAGCTATTGGTCAGTTGCATATCAGCTGGCTAGGATATAAGGAATGTTTGGTTC
CAAAGAGTATTTGTTCTACCTGATATAAGGAATGTTTGGTTCCAAAATACTAGTAGTTAA
ATGGAACCCCAAAACCTAAGTGAAAAGACCAATATAACTGCAACACCGCAATATGTTCTT
GCATACAAATTGTATATATGTTTCCTCAATATGGAAGCCTAGTATTATATTTTGAGAAAA
TTAACCAATCAGTGGCATTGCCTAGGCTGAATAAAATAAAGCAAATGTGGTATCTAAAAC
CAATGTGGCAATAGGCACCTCTATGAGTGGGCCTAAGGTGTAAGCTAGTTGATCGTGTCA
GCCTGTTAAGTGCTGAAAATCACGAAGTTTCATGGCATGACCCAGCGACATGCACAATTA
TTTTCAAACCACAGTAAAATTGTGCAACTGGGGTCGAATTAATGGATAAAAATGCAATCT
TTCTCTCTCTCTCTCTCTCTCTTTCTCTCTAGAATGTAAAGGGGGAACATACCATTACGA
CCACTAGCTGGATCCATTTGAAGCTGTAAAAATAACATGTTTCCAGACTTATATGTCACT
ATTTGTGCATGACGAACAAATCAGAGTGTACTTTGTTAGGTAATTGATAACTAATTATTG
TAATGGTGTTGTATTAACTAAGAGCAAATAATACCCTTACAATCATGCTGGACAACCGCT
TACACGCAGGGTGAGATTGAACTCAGCAAAACATCACAACTCGACTCTTCCCTACAGAAT
CAAGCCAGAGAATGTGCCACTTTATTTCCATTTTGGTTGCCTTTTACCACCCTAAAATTT
GGTAATTGCCGAAGCAACTTCAGGGTCTCTGAAGTGATTCCCACCATTAACCGATACCTA
TTTTCTACATGATTGATTTCATACGGTTTCTCTAGTGTGTTCATGATTATCTTCTGAAAA
CAATGGCATATTGTAAGATAAACTTGATATTCTAAGGACTTCAGCAAATAGTAAAACATA
ATACAAGGAAAACGGAAGGTGATATCACACCCTTCATCCTTTCAGTCAATCATGATTGGT
GTTACAAATTCAGAGGACCAATTGTTAATAAGATGAACATATTTGGTATGTATTTTCAAC
TGCATGATTGATCAACACTCTCTTTTATATAGCATGACAGCAGCTTTTGGTTCTGGTGCT
CTATTCTCCATTGTGAGTGGAATGGGAACCCCGAATCCAGTTGTTAATGCAATTACAACT
GGTATGGCTTTTGCAGTATTTCAAGGTGGCTTTTTCATTGTAAGTAAGCTGTACATGCTT
CCTGCAAATGAAAGTCATTTTGTACTTGAATTATGTCTCTAGGTTTTAGTACTGAATGTG
CTGGTGAGCCTTCACGCTGCATTGCAACTTCACTGTTATATATCAGTAGGATAGGGCAAT
GTATCCTTAATTTATCTATGGTTGTTGTACTCTTCTAATTCTTGGGATCAATCTTATGGT
CAATCCATCTAATTGTAGGTTGGGCAGAAATTCTCGAAGACAAAGACGCATAATGAAGAT
ATGAACTATTCTCGTGGAAGAACTATGTTGAACCAATTGGGCCTCCAAAACTATGAGAAG
AATTTCAAGAAGGGTCTTCTAACTGATGAAACACTGCCTCTTCTCAATGAAAGGTACATT
TTGTAATATTTAACTGAGTCCCTGCAACGGCCGAAAAAATCAATCTTTAAATTAGTAATA
TGCTTACTGAAATTTACCATTCAGTTGTTGAAAATTCACATTTGTGTTGCATTATCCTCC
AGCGCACTCAGAGATGTGAATATCCCCCCTGGTCCAAGACTTGTCATACTTGATCACATT
AAAAGGTTTGGAATTATTGCATGCATTTCCGGTTTCTGGTGCGCCAGTTTCTTTTATGAT
CTGATAGTTTGCAATTTTGCAGAGAACCTGGGTTGGCGAAATCAAACTGAAGTGATTGCA
TTGGCACCAGTTTTTCCCAAGTTGCATAAACTATGGTCTGGGAAGTCCGTCCAGTCCAGT
CCAGCTCTTTCAACGATGATGAGCTCTTTAGGCAGCAGTATGATTGTAAAAGATAACTTA
GTAAATGTTTTGTAGTAATTAGGCTGATTAAATTACATGGATTATCTGTATTGAAGTTTC
AGTCGAGCTACTTTCTGCTGTTGTCATGGTAGAAATTTTATTTCCAGAACACGTGAGCTT
GTTCAGAGTTATTTTTTGAAAATTATTCAGAGTTATTTGTGTAAAGACAAGATGGAATGT
CTCAGTCTGGCTGGAACATGTTAATACCCCTTCCTCCTGTTTGCCAATCAGATAGTTAAA
TGCTGCTAGTTGTAGCAAGGATAAGTGCAGGATTGCCGTACGCTTCAACATGGAGAAGTG
GCTTCAAGCACGCACAAACTCTTCCAAGAACGTATCTTAACGTGCAATATACAATCCCAA
AATAGTTGTGAAAACCACAAAATTTACATAGTGAAAATAGTTGCGAAAGCCAGAAAATGT
ACATATTGAAAAACCTGATTCAGCAAAAGCAAAACAGAAAATTGATAACAATTGAAAAAA
ATCCTGATTCGGAAAATCCCGATTAAAAAAAGTAAAATGGGAAATCTACAAGTATCAATT
TTTTTTCATGAAATCCCGATTAAAAAAAGAGTAAAATGGGAAATCTAAAAGTATCAAAAA
AAATCAGTAAAAATAAAAAATCGCTAGAAGGAGGGCTCGAACCTCCGACCTTGTGGTTAA
CAGCCACACGCTCTGGCCAACTGAGCTATTCCAGCTTCGTTGGTGCAGTTGTAGTTGGAG
TCTAAACATACTTGAGCAGAGAGAGCAATGCACTTCTTCATAATATTCCATGTATATTAC
CGTTTTATTTGGCAACTGGATAATAAATAGAGTTCTTTTTTGCGGGCAGATAATCAATAT
AGCTGTTACACCGTGCATGTTAAGGTCTTTCTGTATAGTATCCAGCAATATGATGGTGAA
TGCAGTGAAATACGATAGTATAAAGTTTGAGGCCTAATCATATATTCCAAGCCTTGTCAT
ACCATATCACATATTCACTTTACAAGATCTAGTGTTTAGTCTAGTTGATAAATACTCCCT
CCGTTTCAAAATNNNNNNNNNNNNNNNNNNNNNNNTAGGAGACTACATACGAAACAAAAT
AAGTGAATCTGTACTTTAAAATATGTCTATGTACATNNNNNNNNNNNNNNNNNNNNNNNN
NNTAAAAGGTCTTATATTTAGGAAGGAGTATCATATTCTTCAGAAACTTGCACCGAACCT
GATTGACAAAATCAAATTGGAGTGATTCACTGTCTGTTGGTCAGCTATTTCTTATGTTGA
GTGATGGGTGTTCCCGGAAGTCTGCCAGTCTACGGCAAAATTTGTTGCTCAGAAAGCTTG
AGATTTTTACTTTGAGCAAGTAGGTGCTTATTCAGAAATCTTACTCAGAGTGCGTCTGGA
AATAAGCAGCAGGTGTTCAGCAAGATATGTTGAAGCACAACACAATCACAGTATGTACAT
TCCAGTCTGACGTAAACAATGTACACATGTTAGAAATGCAGCAGTATGTACAGGTGATGT
AAGACTTCAATTTACATTATATTCACGGAGAAACTCCAGCATCTGGAGAATATGTACATG
AACTACGGAACCTATACCGCTATGCACGAAAGAATCAACAAGCTTATCCACAGCGCAGTA
AGCCTCGCTATACACTGGTGCTCAAGCCTTCAAAGCGTTGGTGTTGGATCAGAAACTTGA
ACAGTCTGATCATTCAACCGGCTCAAGCAAGGTTTTCCCTTGTCATCAGTGTCCATCATT
ATGGTATCACCAGGTTTGTACTGCCCAGAGAGAATTGCTTCGCTGATGACATCCTCAACC
AATTGAGTGACGGCCCTTCTAAGTGGCCGTGCACCATAGCTCTTGTCGTATCCTTGCTGA
GAAATCATGTTCTTCATGGCATCAGATACTACTAAGCCGATACCGAGGGCCAAAAGCCTA
CCCTTCACCTCTTCCATAATTATATTAAGAATAGCCAGCATCTGAAAAATGTCAGGAAGT
GTTAGTGCATCATTTGCGATACTTAGCATGATTCCATAAACTACATGTCAGAAGGTGTAA
TGCAACAATTTTTTCCAACAACAACAAAAAATCTGATGTACAAAATTTTACTAGGTAGTA
GGTACGTAGGTGCAAAGAGGACAAGGGGTTGCAGCGCAGGTATTGCGTAATGGCGCACAA
ATGGACCAGTGGTTTTAGTTTTATAATGAACTAATATGATATCTAGAATCACATGATAAT
AACTAAGCAACCTAAATAAATGAAAAAACAGACCTGAGTCTTCTCAAGTGGACGGAACAC
AACCACCTCATCCATTCTATTGAGCAATTCAGGTCGAAAAAATGCCTTCAACTCTTCCAT
TACCAAGGATTTCATTACAGCGTATGTGTTCTCTTCTGTATCACTTTGCGTCTGGAAACC
CATGCTCATCGTTCCTTTGGAAATCGATGTAGAACCAACATTTGATGTCATGACAATTAA
TGTATTCTTGAAGGAAACCCTGCGGCCCTGTAGTTCAGAAAAAGATAATGATGGTTTCAT
TTCACTAAGATGGATCCAGGGTCTTGCCTCATCTTTCTAAGAGAAGTTCACACAAGATTT
AGCAATGCACATGAGAATGAGTCTCATAAATAGGATCGCCCTTCTAGGACAAGTCATGGG
TCATAACAATGAACAAATAGCTTGTTGAGTTTGCAAAAATAGCTAGCCCGACTTTCGAGG
TGCAAAGTACAGTATGAATTTTATTTATCTACTGCAGAAAGTAATATCACGAATGTCAGG
ATCTAGCACCTGTGAGTCCGTCAAATGACCATCTTCAAACACTTGGAGAAGAATATTGAA
AATATCAGGATGAGCTTTCTCTATTTCATCAAACAATACCACAGTGAATGGTTTTCTCCT
GACTGCTTCTGTCAAAGTACCACCTTCACCAAATCCCATGTACCCTGGAGGAGAGCCTAT
AAGCTTGCTCACAGCATGCCGCTCCATGTACTCACTCATATCTAATCTAACCATAGCTGA
CTCCTGTTAAACGAAAGAAATAACCTTTTAAGATAAATTCCATATAACATGTTCTTTAAG
TTGAGGAATAATTATAGAAAGATATAACCAGGAAAGAGTGACCTACAGATCCAAAGTAAG
TTGATGCTAGAGCTTTGGTTAATTCAGTCTTTCCAACTCCTGTTGGACCACAGAAAAGTA
GAGTAGCAATAGGTCTGTCGGGATCACTCATGCCAACGCGTGATCTCTTCACAGCTCTTG
ATATAGCCACAACAGCATCATCTTGACCTATGACACGCTTTCTGAGTTCATCGTCTAGTC
CTACTAGAAGCTTTCTTTCATCTGCAGTCAGCTGCTGGACTGGTATACCCGACCACAATG
ATGTGACTCTTGCGATTTCCTCTGATCCAACCACAGATGGTCTGCATCATTAATTGTGTT
TTGAAATTTAGATGCCTATATTGTGAAATGCGAAGTCTACTCAGGATGAGATCATGAATG
AGAAAACCTACTCATCAGCTGAAGTTGACGGTGTTGTTCTTGGACTTGTCTTGCTATCAT
CCAGTACTTCAACATTAACCTCATTCTCTTGGTCATTTTCATTTAGAGAATATTTCAACC
TGTTAGTTTGTGCCTGAAACGTGTTGTGAAATGAATTGAACATCTGCCAGCAGATGCCAT
GCAAAAATGTTACTTGGAACAACTCTATTTAAATATTCTATTACCACTTCATGCATGGCC
TGGACAGCTCTAATCTCTTGCCAATATTCATCTGGTGACTTCAAAATAATGGAGCACTGC
TCTTCCTTCTTCTTTTTAAATGATTCCATCCGAGCTCTGCTACCGGCCTCATCAATTAGG
TCAATAACCTTGTCAGGAAGATGCCTGTCAGGGATATACCTCATTGACAAATAAACTGCC
GCATTAATGCCTTCTAAGGTGTATTTGCATTTGTGATAAGTCTCATATTTTTCACGCAGA
CCAAGTAATATCTTCACAGCATCCTCCTGCAAAGAGAACGAAGGGAAATTAAAAGAAGCT
AATAAGGAAGAGTACCAAGCGGTTTTGAGAATTGAAATTCTGCACTACCTGACTAGGCTC
ATTTACAAATACTGGCTGGAATCGGCGGGCCAAAGCCTTATCCTTTTCGAAATGCAAACG
ATGCTCATCCAGAGTTGTAGATGCAATGCACTGTGAGTTCAGACAAGTATCAGCACATGG
AAAGAAAAATAAGAAAAGATGCTATGTTGCAGTATGTCAGCAGATGAGATATATAACTAC
TTAATACTATTACCTTCATCCCAAATTAGCTGTCTTAGATTTGTCTAGATACGGATGTAT
CTAACACTAAAGCATGTCTAGATACAATGTATCTAGACAAATCTGAGTCAATTATTCGGA
TGGAGGGAGTACTTTGCATGGAAACATTCCATGTGGATCATGATGGCTGATTAGCACAAA
TACTTCACAGGTATTTATAAAGGGACGTCACTCAAGTGACACGCTACATAGTACAACATC
AGGAGTATGCGCAGCAGTAACAAATCAGTACAACATCAGGAATAGCCATAGAAGGAGTTC
CTTGTGTGGAAACAATACCTGCAATTCACCCCTAGCAAGTGCAGGTTTCAGCAGATTAGC
GATATCAAGACCAGCTCCCTTATTTCCTCTTCCAGCAATTCCAGACCCAATAAGAGTATG
AACTTCGTCGATGAAGAGAATAACATCATCTACATGAAATAGGGAGCTATTTGTAAGATC
AAAAACTGAAACAAATGCTTAAGTGTTCCATTTATACTGGTACAAATAAGATAAACCTGC
TTTGCGCACTTCACGTATTAAACTAGTAACCCTGGCTTCCAATTCGCCCCTCTCTTTTGC
ACCAGCCATCAGTAAAGCAACATCTAGTGACAGTATACGCTTTCCCTACATAAACAATGT
GAATTAGTCATAACTATAAGCTACTGTTTGCAAGCATTTTTTTTTCTTCATCAAACGTGA
TTGTTTATCTATAATTGGTAGTGGAAACTCACCACAAGGAAAATAGGCACATCTCCATTA
GCAATTTTAAGAGCCAACCCTTCAGCAATGGCAGTTTTTCCAACACCTGCTTCACCCAAA
AGAATTGGATTGTTCTTTGTGCGCCGGCATATAATCTGAACTACTCTTTCAATCTCCTTT
GCACGACCAATAACAGGATCAATAAACCCCCCACTGGCTCGCATAGTCAAATCTATACAA
AATTGAGCTAGTGCGCTCTTCTCTGAAATGACAAGTAAATAAGCTCATTCTTTCCACACT
CCATATCATAAAGAAAATTAATACAAACACCCACAGAGCAGCTTAATCCCTCACCTTTCT
TTTTATTGGAGTATTTGGCAATTCCAGTCCTCCCATTTCCAGCAGTGGATTTATCACGCA
ATTTGAAAGAAGACAAACCCAGAGGCTCTCTGCCATCCTTCGCTAGCTCCCCTTTGACTC
GGGTAAGAGCCTGCTTTGCTAGCTGAGCTGGAACTACTCCTAAGCTACAATGAACATCAT
TAATTAGCTAGTACCCAGTTAATCGGATTCCCATTTAATTACAAGTGCCAGATGGACAAC
ATTTTTTAAATTTACAGTTAATCGGATTCCCATTTCTTTGAGGAGTTCACATAAATTCAT
TTGCATTTCCCGTTTTGAAAGTTCAAAAAATCGAATGTTGCTTATTGTTTAGACGATCAA
GAGAAAGTTTGATGCGTTATTTAGCTGTTGACATTTTTGCCGACATGAAACCACAAATTG
CAAGCTCTTCTGGAGAAATGAAGCAGGAAAACATCAGCACCAACCTCTTGAGGATGCTGT
TGGTTGTCGGATCGTCCAGGTCGAAGAGGCCGAGCGCAATGTGGTCCGGGGAGATAAAGT
TGCACCCCATATTCCTGGAGAACTCGACGGCTGCGACGAACACGCGCTTGCTGGCCCCAG
AGAAGGGCACGTCCGTGGCCAGCCCCGTGGCGGCCTGAGCGGGCCCGCCCTTCCCGACGG
CGGCGCGGCACGCCTCGCGGGCTCGCTCGATTCGGACGCCCGACGCGAGGAACCCCGCCG
CGGACCGGTCCTCGGCGACGAGGCCCAGCAGCAGGTGGTGCGGCGCGACGACCTCGTCCC
CCATCCCGCGGGCCTCCCGCTGCGAGAGCACCACCGCCTTGACTGCCCGCTCGGTGAACC
GCTCGAACACCGCCCTGACGACGAGGCCCGCGGCCCCGCGCCGCTGCTGCCCCCGCCGAG
GCGGCGG