morexGenes - Barley RNA-seq Database

Contig contig_50040
Source Contig contig_50040
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_50040 (8153 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_50040

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_65318	2	2004 bp	MLOC_65318.2	Available	Available	LOC_Os06g16400.2, FRAME:+2, EVALUE:1e-162, 13106.m01810 protein helix-loop-helix DNA-binding domain containing protein, expressed
MLOC_65319	4	6744 bp	MLOC_65319.1	Available	Available	LOC_Os06g16410.1, FRAME:-2, EVALUE:0.0, 13106.m01811 protein armadillo/beta-catenin repeat family protein, putative, expressed
CDS Structure of MLOC_65318

CDS Structure of MLOC_65319

Contig Sequence (8153 bp)

>contig_50040 8153 assembly3_WGSMorex_rbca.fasta
GCCACCGCCATCGCCGTCCCCGCTCCGCCTCGCGGCGTCCCTGCCGCCTCCACCCCGCCC
GCCGCTTCGGCCATTGGCCTCTGAGGTATGCGCATTTCGCCGTCCAGCTATCACCTGTAC
CCCATTGACCTCTAGAGATTTTTTGGCGCACAATCTAGATCCAGACCTCGCGCTCTCGTT
GCTTTCACTGTACTGCATTTGTTTATTCGTAATTATTATGCGAGATTGGATTTATTCGGC
TCGCCGGATTCCCTTTTTTATGTGCGGCTGGTGGATTCGTGGCGTCGAGGGTTTGAGGTC
TCAAGCAGCGCGCCGCATCTCATACTAGCTATCGTTGGCGTCGCAGATTTCGGGCTTCGG
GCAGCGATAGAGGCGAAATGGAGACGAATGAGAAGAACGCCGCTGAGTTGGAGGAGAAGA
ACCAGCCCAGCGGGCACGACCAGCAGCCGAGCTTCCACGGACCCGGGTTCTCGCTCTCGC
CAGAAGCTCAGATGGATTCTTCCACTAGCGCGCTGGCCGCCATGGGGAACCCGTTCCCTC
CTGGCTTATGGAACCCACCTGGCCAGAACTTCGGGTTGGGGGAGGCCAACACGAACGCTA
TGCTGAATGGACACCAGTTCTCCTCGTTTTTGGGTATGCTGTCAGCAGCGACGCCCGCAT
ATCCCGGCGCCCCGTCGGGGTTCATGGATTGCGGAACGGGGTTTCCTGGCTTAAGTGCAA
ACAGTCTTGGAGCCATGATGGATCACCCTTTTTCTAGGAACCCTCCTATGGGTAGTTTCC
AGAACGATATTGAGACGTCTAGGGAGATGAATGTGGACGAAGGTTGCAAGGATGCATTAT
TAACCGGTGATAGGCAGCAAGGAGACACCGAGAGTTCACATGGCGTTGATGCCTCCAGCA
AGGAGTTAAGCAAGCCGGAGTGCAGTGGTGGTGCTGGTCAGGATGAAGGGCCTAGTGTGT
CTTGTCCCAAGAAGAGGAAAAGACCAAGCCAGGTACTTGTTTAATCCTCCCTGTTATAGA
GCTGAATTTGTGTCGATTCGGATGGAACTTAGAATGCGATTTTCTCATGAAGGATCGTGG
GGTGAAGAATGTACAAGAAGGAAGCCAGCAATTGGCAACTCTGGCTGCAAAGCAGGAGAA
AGATGATGGCGACAAAGATGAACCGAAGAGGCCTATTGTGACGTCCAGAAAGTCCAACGG
GAAGCAAACTGAGGATAAATCTGATGCACCGAAGGAAGACTACATTCATATAAGAGCTCG
AAGTGGCCAGGCTACAAACAGCCATAGTCTTGCAGAAAGGGTAAGTCCCGAGTTATCCTC
CCTGAACTTCCTTTATCAAGTGGTATTACTAGCCATTTAGCTTCAGTGTTATTGTTTGTA
ATACAGGTTCGAAGGGAAAAGATTAGTGAAAGGATGAAATTTCTTCAGGACCTTGTTCCT
GGTTGTAGTAAAGTAAGCACTTCTTAACTATCTCCACATTATTGCCATGGGAAAACTTAT
TTAGCATGCTAAATTAGGAAGTCAACACTTCTTAGCTGTATTGCCGTTCACTATTTTCAC
AAATAAAATTGTAAACCAGGTCATTGGTAAAGCTGTTATGCTGGATGAGATAATCAATTA
TGTTCAATCACTACAGCGGCAAGTCGAGGTATGATGTCTGCTAAACTTGTAATGTTGCTT
GCAGCTTTTGCTCTCTCCTGAACTTATTGACGCTGTATGTGCATATTGGGCAGTTTTTGT
CGATGAAACTTTCAGCTGTCAATCCAGCACTAGACTTCAACATAGAACGCATTCTATCTA
AGGATGTATGTAACCCCTTGCCAGATGTATATGGTTCATTATTGTTTTTTATTTTCCTTA
TTCTGATATATGCTTCATACATACAGTTATTTCAGTCTCAAGGAACTGCATCGTCTACCT
TCGGCTTCTTACCAGACATTGGTCATCAATTTTTGCATCCACCAAAACATTCTCAAGCTG
CGTTGCACAGCATTGTAAATCCCGCTGATGCATTTGGAAGGGTAACAAATGCTCCGGTAG
GATGTACATTCAAAGAAGCCACACATCAGGTTTGTCTCATCACTTACTGTTCCTTTTCTC
ATTTGGAGCCCTTCAAGCAAATGCTTGATTAATGGACGTTAATAGGAACATGCAGTATAT
GTTACATTTCTACAAGACCTACCACAGTGTTGCATTGTGTGATAGTTTACAACTTTTGTT
GGAAAGAGAAAAGAGAGTACCTGCTAAGATTTCCATAAGGCCTAACACAGTTTTGTATTA
TGTGGTAACTCAAGAATTACATGGTCATTAATATTGTTACTAAAAACTGGCACAGAAGAT
CTTAAAAACTCGACAGTCCCTTCCATATTCCCTTAGTTCATTTGGATCAGATTCATCCTC
TTATGACTTGAGCATTGCACAGGTTCCCAATAATTTCGATGGAGAGTTCCACAACGTCAT
TGGGATGCCTTTTACCCTTTTTAACGACCAAGAATCAAATGGTAAACCTTGAGCAATAGA
TTCCGCAACCGAAGCAAGAGATCATAACGGGCCATGAGATTTCAACAGAACAACATGTGA
GCTTGTTGACACTCTTCTACCAGCTCGCATTTGAGCACCGAAGTATAGCCGTCCAAATTG
CTTAACTGTTGATCTCCCAATACTGGAATCAGCACTTGATATCCTATAGAGGCCCTTTCC
TCAGATGTACCATCTGCTATTGGAGGAAGCTGGAGATCCTGCAATCGGGACGTCCACGTG
GAGATTTCAAGCATTACATTCTCCTCTGAAAATTTAACTATTGGTGATTCGGCAATCTTT
GTGTCATGATGGCGAGTTCCATTTTGCCAGAAGGTGGCCGTCTCTGGGTACCGTCTAGTT
CAGACCCAGTAATATTGTAAAATGCTCTCTGCAAGATTCACACTCTGCAGTATAATATAA
CAGCGTTCAGTTTGTTAGTTGCTAGTATTGTGAGACTGAAAAAATATTCTTTGTTCTACT
TCCGAATGCAACCATATAGAACTGTGTACTGGTTTTCTATTTGTTGAGAATAAACGAGGC
CTGAGAAATGGTGTATTCTCAGCGCGTGATAATGTGTGGAAGAAACAACATAAACGTTTC
TTCTTCCAGATTTCTAAAACAAACCGTAGGTATCTGTGCTATTTGCATTGTGTTCGCCAC
ATCTGAGAGCATCCAGGAAACTGTGAATCTCGTTTTGATGAATTTGCTCAAGGAAAGATC
ATGAGCGTAGTCAATCGATTAGAACTATAAATCAAGCGTGTTGAACTGCATAGTTCTGAT
TTCTCAAGCCAGTTTGAAGTGAGCACAACATCTTAAACTGCATCTTTCTCAAGCTGAATC
TCAACTGGGTACCCCACCCGTGCTGGATGCATATGATTTTGCTCTGGATACACACAATTT
TGAAGCACATCTTTCCGGAGAAAAAAACCAAACCAACCAAGACAATCTTGTGTTAACGAT
ATCATCAAAGCCTAACCTTAATTACACCTAAGAAAACAAACAGGAACGAAAAACTATACA
TATTATCGTACCCACTATGACCCTTTTAGTTACATTGCATCTGCAGAATTCCATTTTACC
TCATCTTTCTCTGTGTAAAATCTAGTTACACCAGACAATGCACCAGCTGATGGACGGTAT
GAAGCCAAGAAGACGGCAAAAGGGATGTTTGCTACAGCTCGACGGAGACGTAGGTGGCCG
AGTAGTCTGGCATCCGGTGCAGGCTCCGGAGCACGCTCTCGGCGACCTGCTTGGTGGCGG
TGTCGCCCTTGTGGAAGGCGCCCACCAGCGCGCTCGGCAGCGCGCGGTCGGAGGTCACCT
CCCTGACGCACCGGTCGCCGCCGTTCTCGAGGAAGCTCTCCAGGGCCCAGAAGCACCGCC
GCAGCACAGCGCCGCTGCCCTGCTCGTCGTTGCGGTGCTGCCGCACCAGCCGCAGCACGT
GCCGCGGCGCGTCGTGCTCGGTGAGCACGGCCACGCCGCCAACCACGTCCACGCCGTCGT
CCATGAGCGTGCAGAGCGCGCCCAGCGCAGCCTCGACCACGTGGCTGTTCTCGTTGCTCT
CCAGGACGCCGAGGAGGCACTCGACCGTGCCGGCCTCCACCAGGCAGAACGTGGCGGCCG
GAGAGCACACGCCGCGGTGCACGGGGCAGAGGCGGCCGTGCGCATGCGGCTTCCGGTTGT
CGTGCACCCGGCCGGTGCGCAGGCGCCGGAGGATGTTCTTCTTGGGCTGCTGCTCCTCGG
ACGGCGGCTTCGACCGGTTTGCTGACTGCTGGCTGAGATTCTCCAGGCCAACCGCCGCGA
GCCGCTGCACCTCATCACTGCCCGACGATCGGACGAGCAGATCGGTGAGCACCGAGGTGA
AATTATGGTCCATGGCCGCCTGGAGCACATCCTGATCGTGCAGAGTCGTTGTCAGCCGGA
CGAGCGAGCCCACGAGGCCCTCCATGTATGGCTTAGCATGGCGGCTCGCCCGCATCCCGC
CACGCTGCATCTCCTCTATCTTGGCCAGCATGGTCGGCACTGCGTTCTGGTGCAACAGCG
CGAGGTTGAGTGTCAGATGCTGATAGGGCAGCTTTGACAGGAGCGTCGCAGACACGGCAT
GCCGCTCCGTGATCCGCCCCAACTGGCTGATGCTCCTGATCAGCCTGCCCAGCTGCCCAG
GCACCTTGCAAAGCTTCTCGGCAATGGTGTGCCCCATCTGTGGCGACAACGCAGTGAGCA
GCTTTGTCGCGGCAATGCCAAGCGGCTCGCTGGGTGAACCCATGAACTCGATCACGGTCT
GGCTGCTGTCTTGCTCCTTCATGACGGACACCACCGTGGCGAGCGGCCTGGGGAGCGCAG
TGAGCGAGAGCAGCACACGCAAAATGTTGAGGTTGAGATCGTCGGGCATGGAGCACCTGA
GCATGTGTACAAAGTTGTAAACCGAGTACTTGGAGGTGATAACATGACCTTCCTTGTTGA
CAACAATGGCCTCCGGGTTCATGCCAGATTTGACGATGTTCGCAAGTACTGCTGCAGCCT
CGGTCTTGGATCCCATGGGCTCATCATCGATCTTTCGGATGAAAAGTGCCTCAACCATGA
CTGGAACAGCCCCTGCGTCCACAAGGGTCTTGCCGTTGGGCTGGTGAGAAGATATTTGGA
CCAGGACATCAAGCGCCGCCTTGCAGATACTAGCATTGCCGTTGTGCACCATCTTGATAA
GTATCTCGGACGCGCTTCCGGCAATGTTGATGGTCATCTCCTGCTTCTGGACTAGCTCGC
CGAGGTAACCAACCATCTCCATCTGCACATCTTCCGACCCTGTTTCGTGCATATTTATGT
TAGCTAATGATGTTTGACACAAAAGGTTGCGAACTTGCAAGTACAATGAATAGTATGAGA
TGTTTTAGGGAACCCCCCAATTCAGTCACCAGTGTACGAGTTCTACTTTGAGCTCGGGAT
TTAGCTCACTTGTTGCAAAACAAATTTGTACTGACGTACTGTTAGATTGTTGAAAGATAG
GCAGTAACTCCTACTATAGCGGTCCTATTTTAGAAACTGTTTGGATAAAACTATTCTTAT
TGCGGCAAGGGAAATGTTCTCGCTTACCTATCCATAATATTAAATTGGATTTTGACAAGA
CAAAATTGCTCTTTTCTATGTTTCATGTGGAAGAGTAAAAAAATGGAGGAGGTCAAGTAT
GTTTCTGCATAGGTAAAATATATTACCTTCAACGAGATGCCTTTGGAGAGGGTCCAAGTA
TCCACTTTCAGCCATGTACTTGATATTCTTTGGGCATTTCTCCAGGTTCTGGAGGACCTC
TCCGGCCTTCTCTGAAGTAATCGGATCATCGGAGTTGTTGAATTTCATCGTGATCAGAAT
TAATATGCTTCCAGCAGTTGACCCAATGTTTTCTAATAGTAACTCTGATTTTGAAAGCTC
TAGCAAGAAACAGATAGCTGCATGTCTTTCATCCGAACTACTACTAGAAAGCAGCTTTAT
TGTCCTTGAGACAGCTCTAGTTTTTGCTATGATTTCCTGCATGCCACGAAGCAACATTTG
AGTTGTTAATCTAAGATGCATGACAAATACGAATTGAAACTGGACTCTACGAATAATTTC
AGCATTTCATTAAGTTTCACATGGTGATTTTGAAAACTAATTTTGACATGGCCAGGCTAG
GATGTCACGAAAGCTGAAAACATTTCAGACTTCCTTACCTTTCCTGCCTCATCTTCGACC
AACAGGCAGAGGAGCTCCAGTGAGTCGCAGCGTATCAGTGCATCCTTATGCTCTAAGAGA
CGTGCAAGGAACTTGGTTATGCCAATCTTGTGCATCTGCTCCCTGTTCTTTCTCCTCGTC
CTGGCAAGCAGCTTCAGCTCATGTATGGCCTCGAGTATCATAGCTTCCGTGGTTGCCAGT
GAGAGAGCAGTACGCGCGATTCTAATCCGTGTTGCTTCATTCCTCATAATCCATTCCGCG
ATTGTGCTCTTGAGTGGAACATTAGTCCTCAGAGTCTTGCTCTGCATTGCTATTTTTGTT
ACCGGGCAGATCACATGTTCAGAATCATCCGTTAAATTGTCAAAGTACTCCTCAATGGTT
CTCCTGTCATATGTTACTCCGCTTTCGGTAGTCACTGGATCAACCATGACCTTATTTGTC
AGTGGGCAGAAGAAAGAATCATACAGCGGCTCAACATACTCTGCGACTTCAGGGAGTGAA
CTGAACGACTGCCCACCAAACTCATGAGACTCATGGTACATTCCCTGCAGGAAGTCCACC
AACCTTGGCATGTCACCGTCGTGCAGTGCTCTTCTCTTGGGCCTATCATTTGCAACAACT
ATCGTCATATCACCCTCAGAATAGCCATCGCAGGAACGCTGATCACTATGATGCTGCCCG
TTCCCAGTAACCTGAAGGTGCGTGCCGGCTGCTGCATCCGCACACCTGTTGCTCCCAAAT
GCTGAAGCAGGTATCCTGCTGAGCTCATGGCCGATGTTCTTTATCACATTATCAAGGTCC
TCGGTTATGCTCTGGAGGTCTTCGTCCATGAGCTGCTGCGCGACGGCGCTGCACCTGGCG
ACGAGGTCCTTGGCGAGGTCGACATTGGCAGCCAGATATTCGGCTATGTGCATCACGTTG
GTCGGGGAATTCTGCACCCTCTGCAGCTCCATTGTCGCCGGGGTCACGCGCTGAAAACGG
CTTCCTACGTCCATGAACTTCTCTTGGCCGACATCGGCGGAGGCCATTGTCGACATGACC
TCGGAGATTGCCGCTATGGACTCGGCCAGTGCCGCCTTCCGGGCTTGTCCCCCGCTTCTC
TGAAAGAAAGTACACGTCAGGCACTCGAGCAAATGCATCCATCCAACTCCAAAGAGGAGG
AGTTGTTCTCGTGGAAAATGACAGTTGAGGGTTCACACCAGCAAACAATAAAGAATTAAC
CGACAGACTGAACACAATCTGAAGTTGACAAGGAATTGATTCTACAACCATGGGAGGATA
CGATACGGGACTGGCCACTTTCCCCCAACTCCCGATTGTTCACAAATGGTTTCAAGAAGC
GGCATCTCTTCTAGTGGTATGAACGAATAAGAAGTGTTGAAATTCAGTCTACGAATAAAA
AACAAACAGCCAAATTAAAGACTTGTACTGTGAAGCGGTTGGAAATGGGAAACCCGCTGG
ATTCTTGGGGTACTCCTTGAAAGAAGATGGAAAACACCCCGAAAGGGGGAGAAGAACTGA
ACGACAGTTGAATTTGCTCATTTGAGCATCTGGAACGGCCTCGGCTTCGTTCCCCCGCTC
ACTCCGCCACGCCGAATCCACACAAAACCGCGCAGGTGCGGTTTATACAGAGCTAAAAAC
CCATGGTTATTTTCCCTCGGACGAGGCTTACCATCCCAGCACAAGGCGGACATGAACAAG
CACAGCAGAGGGACTGGAAATCGTCCTGAAAAACCTGCGCGAGGCCTGGCGGTTGACACC
GCACCACACACCCTGAGCCGAATTGTACAAAACAACCCAACAGCTCGTCACCGGAGGAGA
AGAGAGGAGAAGGCAACCCAGCAGCACATACCTGCATCCAGTCCAGTCCGGGCCTCCGCT
TCGTCCGCCGACCACCTGCCCGCCCCCGCCGCGCCGACGCCGACGCCGACGCC