Map Locations of contig_50038 (6960 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_50038

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_65317 2 1879 bp AK374349 Available Available None





CDS Structure of MLOC_65317






Contig Sequence (6960 bp)

>contig_50038 6960 assembly3_WGSMorex_rbca.fasta
GGAGTGAGGAGGGACAAAGTGAGGGGAGTGCGGGGAAGAGGATAAGTTCAAGGGCGCTAC
TTAGCAATAGCGCCGGGACGGGGAGGGCCTCCGTGTTGGGAGGATGGACGGGAGGAGCGC
CGACGCAAGGGAGAGAGTGGAGAGGGAGGGAGTGAGGAGGGACAAAGTGAGGGGCGTGCG
GGGAAGAGGATAAGTTCAAGGGCGCTACTTAGCAATAGTGCGGGGTGGCGAAGGGCGCTA
CTGCTATGAAATTAGTAGTAGCGCTGGTTTTCGACCACCGCTACTATGACAGGTAGTCCC
TGTCGGTGGCGACGGGATAACTTAGCAGTAGCGTCTGGTAAACAGCCCGCGCTACTGCTA
CATGAATACATGTAGCGCCGGTTGTGGCCCCGCGCTACTACTACTTGGCAATAGCGCGTC
TAGATTATCCCGCGCTACTGCTAAAATTGTATCTATAAGCTTTCTCCTAGTAGTGAAAGT
TCGATGTTACAAAATCAATTGATATGCCTGTTAGATGAAAAAAAAAGTGGGTAAATGATG
ATGTCCTGCTAGGGACTTATCCGTACCTATTTGGTGTCCCGACCCAATATTTTTGTTGGA
TTGAACCGACAAATCGATGTGTATTTCATGGTTATGTTCTTTTTATGAGCTGATAACTTG
ATCCTTGCAGGAACAAAGGTAGGTCAACCAATAAGAGCTCTCTCAAGCTGGAGCATCTAC
TCGGTTCTTTCGATGGTCTCATGAAGTTGTGCTATTTGGTTGTATTATGAATTTTTTTTC
ATAGAAATGAAGAATTATGTGGGTGGGGTTATTGAATGTAAGTTTAGTAGGATTGACTAT
AAAGATTTATAGGAATTCTAGCATTGACTGCAATAGGAGTAGTCTGCTTCCGGGGAAGGT
AAGATCTCCTATGGTTTATGCTTTTAGGAAAACGGTTTACCAAAGCACAATGAGCTTTTA
GAATATGGTAATTTACGATGAGCTTGTAGTTGTTTTTAAAGATGTGTGGCCGGTTTGAAA
TGAGACTATAAAAATAATTGCTCTGACTATATTTGACAATGGAGAAATGTATGCTGGTAA
TGCTCGTCTCAATTGTTGGGTAGTTGACAGCAGCTAAACTGAAGATTGCATCCTGTTACA
ATTGCAAGGCCTCAAAGTAAATCTTCGGTTTGTTTGTATCCTACTCAATTCTTCTAACTT
ATAAGCAATATAAGTATGCATTGTGAAGTATTGAATGTTCAAATATTCAAGTCCATTAAA
GTTCAATATATTCAGGTGATTGTTTAAAAAAAAACTACATACTTGTTGGTTTGCAAAAGC
TCCACTCTCAACTGGGCTGGGGAAGTCCGAATTATCAGACTACACTTTTGCTCTATGATT
CCTCCCTGTTGCTTCAGTTGCCCATACTCGTTCGTGGCTCTTTCTGCAAGGACACCGCAC
ATAGTATGTAATCCACTGAAATAGTTCATGGCAGACCATGAACTATTGAGGTGTTGTGAA
AGATTCCAGAGACAAGCTTTATGCATGGTCAGCAGCAGACAACAAATCAATGCTACTCAC
ATCCTGGGCATCCTGGAACAGAAATGGGATGTCTCTTCTCCCATAGCACAAAAAAAAATA
TTCTAAAACGATAGCACCATGGGGCATAACATCAGCAGAGATATAAAAACCAGAAAAGTA
GGCCTGACACAACATGATGCATAAACAAACGATACGGAGAAGAGGCGCGTACACATATAG
CTGACAGTTGAGCTTGCCTGATCGTGCTTGTTTCAAAGGCATAAGGAAATGAACCGCAAT
TGTGATCGACATGGCCAACACTAATTATTAATCCGAGCAAGTCACCGTGTCCGCATACAG
AACTTAGATAGTAGACAGGTAAAGTTTGCAAATGAAGCGCTTAGAGGGGCAAATTCACAA
CTGGCCAGTACATAGGGCTAAATTCCAAGACGAGCACATAACAGACCCCCCGAACAGCAT
ACAAATCGGAAGAACCAACAGCACACAAGCCATTTTCTGCATCTCGGCCACCGGAATGTA
ACCCTAGATACCTGCAGACCAGCCGATTTCATCAGTCAAAGTTAAAGTGATGTATCTCAA
CACATTCAGGGAAAAAACGGTTAAGTTATGGTATCTCAATTTACAGTACGACTCAAACAC
TACACATTAACTTCACTGGTATTGCGGAAACCGTGCCACATGCTCCGAAACTGGACCGTC
TCAGCGGTCAGCATCCCATTACAAACAGAGAACCGCTACAGGAGAACGATTCATTTTTTA
TCACCACACCTTCGCCTCTTATTGTTAGCATATTCTTTAACTTTTGGGCTACATCTGTTA
TTCTATTCTCAGTGAAGCCAAAAATTCAAATAAAATCAGTGGTCCAAATAATTCCATTAA
AGGGAAATACTGGACATCCTAGCTTTTCGAATCATTTGAAATAGTCCTTGTTATCATGGG
CACACAAGGGGCTCATAGGGCAACAAACTCAAACCATCTGGTTTATAGCTCATAGACATA
CTTTTAGTCGCTCACAAATCAAATTTAATTGAACTCATGTAGTAGAAGCCTCAACTAAGG
GATTGTGCATTGTCTTATTAATAGACACATTTCCTTCGGCCCAAAATAGATGCATTATTC
TTTCTTCACAACAACAAAAGCAATGCTTTGACCACTAGTTTACTGATAATATTAAAATGT
TAGTAAAAAATGCAATTTGTGACAAAAGCAATGTTTACAGTGAATCTGTTAGTCATGCCA
TTTCGGTCATATGTTTATAAAGTCTTAAACACTTAAAAGTGACCAAAAGTGCAGAAAATA
GACTGCCGGCAAAGCATTGATACATATAGCTTGGACCAGACAACTCATGTTAGTGCATAA
TGGCAGATTACATATGCAAATTAGATAGACACTGAGAGATATGCTGAGATTAAAATTTAA
GCAAACTGCCTTGCACTAGAACAATCATCCATAAAACTGCAATAAATTGAGCAAAAGGAT
AAATAGAAATACAAGAATTAATGAAAACATACTCTTCGAGGATTCTGACAATCATCAGTT
CACTAGGTACAATAAGGACCCAAAATAAGCAGCCGTGTGAAATGATATAGCTATCCCGGC
CCGTTTATATGAAGGAAGTATGAAGCAAATGGTCATGCATAGCTATCAACTACTTACGTA
GAGGTAACACCATATGAATCGCATTAGGATTTGATAGGTCCATAAACACGAAAAACTAAT
AAAAGGCATGTAGCAACTAGTAGAAGTAAAACAAATAAAAAATATGTCCATGATGAACAC
AAAAGAGGACGTATTGATTATGTTACCACTTAACATATTCGCAAAGAGGGGAAGGGCAAT
GATTTTTGAGTCATCTAGGAGCTAGAGAGAAAAAAAAACCTGCATTATCAGAAGGAACTG
GGGGAGTACTAAGGAGGAGGTAAACTGAAAGCATGGCAGTTCGATTGAACAGGTAGGCAA
TCGGAAGTATTCACATCCAGTAGAGAGGGGATAGAACATCAGCAAATAAAATAGAAGCCG
GGTGGTTAAAGGCATAAGGAAGAGAAGCAGGGCCTGGAGGAAACGTCATAGATGCAGTCT
GCCATCAATGCAAGGAGGTGACCGGGTAAGCAAAGAGTTGTGGATGATAATAAACAGATG
AAGACAGTTTGCTAGCTCTGACTTGAACAACAATAATTACAGAAGTGAAACTAAACAATA
GACCAATTGCAGGCCATCGCCTGGCTGCAGAGAATATACAAAATCATATAGCACTAACAG
ATTCTTTTTTTCTAACATAACAAATCACAATCATTACATACAACACCACCACACAAGAAT
CAGAACAGAACTACTATAAGAAAGAATCGATATATGTTGAAGAGGTCATGAAGCAGCAAA
AGGAACAACTGATATAGTAGTATAGTACTACTTAAACTGGTTAACTAAACAGGAAAGGAT
CAACCATATATATGCCATGAACCAATAATCAAAATTTAACTTGGTTTTGTTACAACGAAT
ATGTGAAGACATGCTTTACCTGCAGCGTAGACACTTCTGAATGGATGATAATGAGAAAGG
GGGTAGGTTCCAGAAAGCTTCTTGAACTTCATTGACTCAAGATGGACCATAAAGAGGATG
TGATCTGTCCACACGAACACCACATTATTTTCCTCGTCGAGCCCCGGTATCAATATGTCA
TTCTCCTCAGAATTCAGAGAAAGCAGCTTGTCCAGTTCAATGGTTCTTCCAAGCCCCCAT
GAAGCAACACCGCCAGAATCAGTCTCCATCTTCCACAACTGGATGCTGCAGTCTGTCTGG
AGGAGTAAACCAAGGCCACCGCCCTCTGCCGGCATAACCAAGAACATGTACTGGCCCTCT
TCAAGGACATGCACCGGCACCCATATCACAGCTAGGCTTTGCTTCTCCAAATCAAACTCG
AGAATTCCGTCCATATTCCCAGCAAGCTTCCAGTAAAGGGAGTCCCCAACCAGCACAGCG
GGCTTGTCAGTAGAAACCAAGATGGGAGCATCGGTCGTTGGAACGTCGGACGGAAGCTGT
GTTGAGACGAGATCACCCCATGCGCCGGTCTCCGACGAGTAGACGCAGGCAAGCGCACGC
CGGTGCTGCTCGTCGTCGTTGTCCGCCACTGCCAACACCACATGGAATTGGAAGCGCTGG
GCCTCGTCTCCGGCGGCACGAGCACGAGCACGAAGCACCGCCCCGTTGATCGTTGTCTTC
TCCGCGTGCACCGCGACCCCCGGTGGCACGTCGAGGCGGCGCTGGTCGCCGGTGACGGGG
TCCCACACCAGGATCTGACCCGTGTGCTTGTTGAAGACGAGCGCCAGGCCATGGCGGCAT
CCGAGGGACATGAACCGGTCGCCGTCGCCGTCGCCGGGCTGCAGGGAGAAACGGGCGGGG
GAGACGCGGTCCGGGGCGTCGAGAGTGGGGATGAAGGGCAGGGCGTCGTTTCTGAGGAAG
CAGCCGAGGAGAGGAGGGCTGCGGCGGTGGTGGACGCGGAAGCGGCGGGAGAATCCTGGG
TCGGAGACGAGGAGGCGCCAGCGCTTGCAGACGGCGGAGGCGCGGGGAAGGGAGGAGGGC
TGCGGGCGCAGGCGGACGAGGATCTGGCGGAGCAGGTCGTCGTCCTCCAGTGGCCCCATC
GCCGGCGAGCGGGGGTGGGGGCGGCGGCGGCGGCGGCAGAGGCCTCGCTGCTCGTGCGGG
CTGTGCGGGATGTGGTGGGTGGGTGGCGTCGAAGCAGCAGCAGCAGCCCACAATGAAATG
TGGAAATGGATCGGCCCAAAGTTACACTAAAGAAATCCTTTTCTGTTTTTTCTCTCGGAT
AGGAGAGTAATTGACAAAAAAATATCACTTTTGGGGTCATCGTCTCGCAGAACTACCACT
TTAAAAAAAATTGATCAAAAACTACCACTATGATCATATGTCATAACGGTCAACTTAGGC
CTTGTTTGAAACCACAATAGATTATGATAATCTGGATTCTAAAAATAAATTATATAATCT
GATTTATAAAAATAATCTAGGTGAGCATGTTTGGAGGCCATATTATATAAACTGTAATCC
AGATTTTACATTGCATAATGACTCGTCTGCCCTCTCTTTTTTGAAAAAGAAGAGGAGGGT
GACGGTGGCAGAAATGTAATTATCTCCAAATTTACAAGGTAATGATTCATTAGCAATCCA
TAATCTGATTTTAGCTGGATATAATAGATTATGAGTTTTTAATAATCTGTTCATCTAATT
TTTATAATCTACATCATAATATGTCTTATTTGGAGACTAAATTAATTATAAAAACTGGAT
TATATAATTTGATTGGTTTCAAACAAGGCCTTAGGAGTCAAAAAATGATAGTTTTTGGTC
AAATTTTTTTTAAGTGGTAGTTCTGTGGGACGGTGACCCCAAAAGTGATAGTTTTTTCGT
CAATTACTCCGGATAGCAGGACGATCTCATATTTTGTTTTAGACTATTCCCTCTATACAT
ATATACTTGTAGTTTAATTTTACGGTTTTGCTAAAACTCATTCGAATGAGAAACAAATTG
GCCTCATTCACTTTTTTAATGTAGGGCATCATTTTTGTCTTTTTTGTCTTTTTTTTCTTT
TTCTATGTAGCAGTTGCAATCTAACCGACACGACTGGCAGCTGCAACCTGTGATACCTAA
CTATAAACGCTTGTGCTAAGGCTAGTAGTTGCAACCGACCCGACACGACCGACACTGCAA
GACGTAAGGCGCGAACGGAACCTGCTTTTTTCCTTTTTTTTGTTGTAATAGTTGCACCCG
CAGTGACAAGGCTGCAACTGCAACCAAGCACACCCAACCGCAACCGCAGTGACAAGGCTG
CAACTGCAACCAAGCACAGCCAACCGCAACCGCAAACGAGCGGGGTGATGGAGGGCATCT
TTTTTTGTTTTTTCCTATTTCTATGTAGCAGTTGCAACCTAACTGACACAACTGCAACTG
CAACCTGTGATACCCAACTGTAAACGCTTNNNNTAAGGCTAGTAGTTGCAACCGACCCGA
CACGCCCGCAACTGCAAGACGTAAGGTGCCAAGGGAACCTGCTTTTTTTCCTTTTTTGTT
GTTGTAGTAGTTGCAACCGTAGTGACACGGCTGCAACTGCAACCAAACACACCCAACCGC
AACCGCAACGAGCGGGGTGATGGAGGGAATCCCTTAATCTATCATACCATACCATAGAAA
AAAGTGAATGAGACCAAATTATATCTCATTTAGATGAGTTCTAGCCACTCCCTTAATTTT
ATTATAGCCACACCAACAATGGAAGATTACCATGGACATTCGATCAATCCAGTTAAGTCC
TTGTTTGGAACCAACCAGATTATATAATCCAGTTTTTATAATCTATTTTGTCTCCAAACA
GGATAGCTTATGGTGTAGATTATAAAAACTAGATGAATAGATTATTAAAAACTCATAATC