morexGenes - Barley RNA-seq Database

Contig contig_50020
Source Contig contig_50020
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_50020 (9270 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_50020

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_65299	1	1126 bp	None	Available	Available	None
MLOC_65300	1	403 bp	MLOC_65300.1	Available	Available	LOC_Os01g36640.1, FRAME:-1, EVALUE:2e-33, 13101.m03710 protein disease resistance protein RPM1, putative, expressed
CDS Structure of MLOC_65299

CDS Structure of MLOC_65300

Contig Sequence (9270 bp)

>contig_50020 9270 assembly3_WGSMorex_rbca.fasta
GGGGGGGGGGAGTAGAGGAGGAGATAACACCTGCTTCTACTGAGATGCATGAGGTGGAGA
AGAAACTATGTGTTATCGGATTATGGTGTATTCAAATGAGGTCTCGTGATCGGCCAACAA
TGGCCCGATCTGGGTCCAGCGGGCTGGCCACGCGCGCCCAATATGGATCCCGTGAGTCTG
CCGTGGTTGCTGCTAGGCAGGGCCTTTGATGTGCGTTCGTTGGCGTCTAAAGGAGTGTGA
TAGCCTGGCATATTGGAAATGACAGACTATTCATATTAATAATGATTTTTTTCGATAGTC
CATTCGAACAGTACTCCTAAGTTAAGTGTGTTTGGCTTCGAGTAGTTTTGAAATGGATGA
CCGATCGGAAAGTTGGTCCCGGGTATTGATCTGTGGGGCTAATCTAGATCCCACGAGGGG
TAACTGCCAGTGGCGGTTGTGCCCGGGGCGTTACAAGGATCTAGTGGCATCCTGAAGCAT
CTTCTTCCGTTGCAGCATGCTAGTAACGTGGGGGATACTGCCTTGTCTGAATAATGGTGG
TTTGGCCATGCTAGTCTTCTTGTGCTCAGTCACCGAACGCTTGATGTTTGCCTGCTCGAT
TAAGAGCCGGCGAGTTCCGGTCTTCCTTTTGGATGTCTTTGGCGACAGGCGCATGAGCCA
TTGCATATCTAGATTCAAATCGGGTCGTGCACGCCCTTATCTTCGACCGACGAGGCTTTA
TGAGGGCGAGGCGCGAAGCTTCGCTTGCTTGTCGGTGGTATGGGACATGTCTAAGTATAG
ATTTCAATAGTACGGACAGAGGAGAGGAAAGTCATGGTGGCTCTGATCGGAGGCTTGCAG
TGGCGGCGATGTATGAGACTTGCGGCGGAGGTTTCTCCTGTTTGTCCGTGTTGAAGACTT
ACATCAGCGACCTTGGCAAGAGGGGGCAGCAAAACAGGTGGTCTGCATTTTTTATGGTGC
TCCTTTGAGTACCAAACCGCGATTTTCAGGTTGAAAGCCCAAGGTCTGGCCTTCATTTGT
TGTAGCTGACAATGGACTTGTCGAAGTCATTGTTTTAGAAACTTGTTTTTTCATAGTGAG
AAAACTCAAGATCTTCGATAGGGCGACCACAATACTTGTGCATTGGTTCTTTCCTAGACG
TCACTTTTGAAGAACCTTTTTTGCGGTCCGGGTGTTCTCCGATGGTTAGAGCATTGCTCT
TGGGAGGGTTTCAACACCTTGAGGGGGCCTTTGTATTTCTTTTTTCTCTTTTTCATTTTA
TTCTTGGTTGTGTGCATCCTTGATATGCTTCGGTATCTAGTTGGTGCACAAGTCGGGTGT
AATTGGTATATTCCTGATATTAATATATTTCCCTTTTAAAAAAATGTGTATATGCGTGTA
TCATGGAGTTATGGTTGAAACAGTACCAATCCAGTATAAATGTTTTGTGCACTTGTTGGT
GGAGAAACAGAGTAAATCTAGTAAGGTTGAAATCTTACATCCATCTATCCATTTTGTTTG
TTCAGTAGTCTTGATACAAATTGTGATCGAAAATATTGTTTCAACCACTTGTGAGAGGTG
ACAAAGAACACCTTTTTCTTGTTGAGGAACATTTTTCAGAGAAATTTGTGTTCATTTTCC
TTGGAAAAAAAGAGCTTTGTTTTCACTCTATTAAGTAGCTTTTTCTTACAGCTGAGAATT
TTTATGGATGAAGATTGTCACTGAGAACCATTTTTCGCTCTGCTTGCATTTTTTTTGCAC
ATGATATATCTGTAAAACCACATTAAACATTGCTCAACCCGATTTCATCATGAATTTGCT
GAAAAGCAGTTTTAGTTTACAACAACATCATTCCAGTTCCAGGTTGAATTTCCAGCTGAA
TAATTGGCATCATTGACATATTCTCCCCTTCAGGATTGCGCACTCCCTGGGACGTGAAGA
CATAGTTAGATAGTACTTTTTCCTCTTTGCTGCTAAGAAATAGCCGTGGTCATGGAGCTA
CATAATTGCATTTGATGACCAGAGCCACAGGCCACAGCTGATCTTCTTATGCATGTCGTC
TTCGATGGTAGAAAGGAAAAAATAAATTCAACTCTGATATTGGCAAAGTCTGAAGAATGT
GTGGACACTGTCAGTTGCCCAGCAGATGGGGCAGAAAGTCTTGTGTTCAAGCTCCTGCAA
TGCTAAATAGAGAATATGGTGGTCCTGTTATATGGTAGCCTGAAGCTACTAGCGAGTGGC
AGCCTCTGTCACAAACTGCCTTCCTGGTCATGCAGAAATAATAGAGTAGTTTCAGTTAAA
TTCAACATATATGACTGTTTATTTATTTATTACTCTTATATAGAAATTTTGGTCGAAACA
TATGTCTGAACCAGTTGGCCAATTAATTTGGAAGGAAGGATTTCCCCCTTGCGGTGGGAC
AGATGAGAAGAAAAAGCACCTCCATTCCTTATTGTAGAAACAAATATTTGTCTAGACAAC
TTTGTGTTCGTTTTCTCAGAAAAACAGAGGAACTTTGCACTATTTGGTGAACATTCCATC
AAAATCACTGGGAAGCTAACTTACATACATTCCATTTCGAATAAAACAAATAAAAGCCCC
CAAAAAAATAACATTTAATTGCAAATTCATTGAAGGAGGTCTTTAATTTACAACAACATA
ATGCAAGATTCGGTTTCCAGAAACATGTGACCATGCTCTCATGATCAGGGTTCACCACGA
CTGCTGAATAATGAGGAATAGATACTTGTATTGCTTACTAATGGTTACAGCTTATTATAT
AAGTAGATTACAAGTGCCAACGGCAGTACACAAACTGAAAAGCTCGAAAGAGGGATTGGC
GAAGAACCGGCATTATTCCTCAACAATCAGCCACAACTGACTGATGAGCAGAATACTCAT
TTCATACATGATAATGTGGAAAGAAAACGATATGCGTAGGGTTAGTTGCGGAGCCTCTCA
TGTTTTCCCCTTCAGGATGGCGCACCACCAAGTACGCCGACTCATAGCTCTTTTTTTCTT
TCTTTGCAGCTAAGAAATCATCCCATTCAAGAAGATATAAACTTAAGAGTGATAACAAGG
AGACATTGGAGCTTGCGTTGCAGCGCAGAATCTGGTAATAATTCAAACTTAGTCAGTCAG
TCAAGGGAGTGAATGAATCTCTTTCCGGTAAGAAAAATAAGTGGATGAATCTCTTTATCT
TTACAAAAGCTACTTAATAGAGTAGTCAACTCAGCCACTTAATTTAGGGTAACTAGTCAA
GTATCAAAGACTGAGATCACACATCCTTTTCCTTGGACAAACTTTAAACTAAGGAACATC
CACATGGTGGAAACTGCATGATCGGTAACCTGTTTTTATGATCGACCCTACCAGTTCTGT
CATATGAACATGCAGAAAGATCATGCTAGGTTAAGTTGACAAGCTCGCAATAAATTTACA
CTACTAGGAGCTAGTACTAGTTGTTCTAGTCTCCTAATATAGGACAAGGTTTGTACAAAA
AATACTGTGTGTATATGCACAAAAGAGTGGAGACAAAACACCAAACTCTGACCTTGGAGC
AATGACGATGTATCACCTAATCCTTCCTGCAAGCCCTTTATAGCTCAGTGCAACTGTAAC
AATCCTTATGTGGCTAATCTTTATTTCATCTTGGCTGCATTCATTTGAATCTCTGTTCTG
CCGGAGCTTCTCTATTAGCTCTTCTGATGTGTCATACAACAATAATTTCTCAAGGGCTGC
AAGGTGTTCGATGCCATCTGGAAGAAACTTTAGCTTAGGACAGTCTGCCAACAGTAGCTC
AACGAGTTCTTGCATCGCACCCTCCTCTATTCCAACTTGGCTGAGCTGTGGTGTGCCACA
TATGTGTAGACGGCTAAGTTTTGGAAATGAACCTGCATGAAAATCCAACCTCTTCCCTTT
GAAAGCGTTCCATAGCTGAAGAAAGCGTAGACCACTTAGCACGTGCAAACAGGAAAAGGT
TTCCTCATCAATATTGGAGAATGCCAGGGTCAACCGAGTAAGGCTATTAAGATGTGACCA
AGAAGAGAAAAGCTGAGGCATTGATGTTTTCTCTAGCTGCCCTTCTAAACTAAGCCAAGA
AAGGGTTGGAGGTAAGTATAGCCTTTCCAGGCGCAGCACCTCATTCTCAGCTGCAGCGCC
AATTTCAAGATGAACAAGATGCCTCATTCTAGTGATAGCATTGCTCAAGTCAGCAGAGTG
TCCACTTTGCACACTGCAGACATCGAATGTTCTTAGCTCTGTCAGAGCTCCAACCTCACG
AAGAAATTCTGGAGTGGCTTTGACAGATTGAAGAGCCCGCAGTCCTGCCAAGTGCTGCAT
GCCACCAGGCACCTTGACCCCAATTATACTTCCTATTGTGCCCGCCAAAGTACATGCATA
CAGGTGTCTCAACTTCTGAAGCTTCACAACACTCTTTGGCAAGTACGTCAGCTTAGAATG
CCCAGCATCCAAGACTTCTAAATTTTGTAACCTCCCGAGTGCTTCAGGCATGCTTTCAAT
CAAGGTATCTCTAAGACCCAAATAACGCAGATTAAACAAGTCGAATACTTCATTAGGCAG
CATTTTGATATTAGTACCTTGCAGGTCCAATGTCGACAACAGATTCGAGGATGTTAGGAT
ATGCTTCAGCAAATCAACATTGATATCATTCTCAAATACATGCAGGGCACGGAGCTTTGT
TGCACCAGATGGGCTCAGTTGTTCAAGGCTTCCCGCCTGGACTGATATGCGACGTGCACC
CTCTACAGAGAATGCCCTAGTACCACCAGTACCATTATAAACTTTACCAAAGCATTCCTC
CTTGGCTTTGTTGAGGGCAAGAAGGCGTATGACATCATGCATCCTGCAGTATTTCAGTCG
TCCGGCATAATTCCTTTCCACTACCTGCAGTAGGCTTCGGTTTACAAGCTCAACCAAGTA
TCCCTCTGCCACTTCCTCCAATGTTTTGCTCTCATCTCTTTCCGTGATAAACCCCACCGT
GATCCACTGCCTCATTGTCTTCCTCCTCTTTAATACATAATCTTCTGGGGACAATGCACA
ATGTAGAAAACAATTCTTCAAATCAAACGGAAGGTCCTCCAAGCTGACCTTTAGGATCAT
ATGAGCATCAGGGATCACATCTTTGGCCAACTGCGAATCCAAACACCTGTACACATCCTC
CCATTCAGCGGAATTTTGGGGTTTGCAGGAGAGTAGGCGGCCAATGCATGCAATAGCAAT
AGGCAAGCCTTGACTCTTTGCTATGAACTTCCAAGCCAATTCATGCAGCTCCAATGGGCA
TTTTTGTTCATCAACATTCCAAAATGCCCCTTTGCAGAACAACACCCAGGAGTGATGTGC
TTGTAGTGGTTCCAAGTGAATTCTATATGCAAACTCCCTAGTTGCCAACACTGTCTGCTT
TCTTGATGTCATAACAACTCGGCTGGTACAGTTAGATGTTGAGAAGACATCCCTTATCTC
TGACCACAAGCGCTCATCCCAAACATCATCCAAGACCAAGATGTAATTTTTACTTTCAAG
GTAGTTGTGGATGGACTTTGCTAGTCCTCTTATCTGAATGTTAGTGACTTCGATTATGAC
GCTGAACTGGGCGGCGATCTTCTTCAGTAGATCCTCAATACGGTAATTCTCCGACACGGT
TACCCACGCCGCAACATCGAAATCCTCTTTCACAATGTTGTACACATGATCGACCAGAGT
GGTTTTACCGACACCAGGCATGCCCCAAACCATGATGACTTTGTTGTTTCTCTGCTCCAT
ACCATCACCACTACCAGTCAGCCACCGTATCAACCTCTCCTTGTTCTCTTTGATTCCCAC
AAGGTCCTCATCCTTAGTGAATTGCAAAGTTTGACCTCTATTTGTCGATCTGACAGTAGT
AGCAGATCTGCCAGTGACAGCGTAATCCCTCTTCCTCCGGTTGGCATCCTGCAGTTGGGC
TTCGATTTCTTGGAGCTCGGCTGCCAGACGCCGCCAGGTCTTGATATGCTTGAGCCTCTT
CTTCATCTCGCCAGCGAACCCTCCATGCTTGCAGTCCTCTAGCTTGTAGGTGAACTCATT
GACGACGTCCTCGATCTGGAAGGCGAGACCCCTGACCTCGTGGACGAAGATGGCGGTGGT
CTTGTCGGTGTCCTTGAACCGCTCCGCTTCGTGCAGGTAGGCCTGCATGTTCTCCAGCTC
CGCCTTGGACCGACGGATTTTTTTGAAGAGGCCCCTGAGGGCGGTGGCTTCCTTGCCGAG
TAGCGCCCCACCCAGGATAACCGCCTCTTTCACAAGCGCCGCACCAAGCATGACCACCAG
CTTCCCGACAACAGCTTCTGCCATTGTTGTTGAGGCTTTGAGCTCAGATGTAGAGGATTC
TTGCTATCGGAGGCGAGCAGAATTATTCTTGCTGCTGTATCAGAGGAAGAAGACGTACGA
ATGGTTTGGTAGCGGTGGCTACAATGGGTGACCTAATTTAAAACAAAATCCTTGCAAGAA
CTTTAGATCGCAAATGGACAAATTATCGGACGAGAACTTCAATGTTCTCAGCTAAATTAT
ACTCCCTCGGTTCCTAAATATAAGTCTTTTTAGAGATTTTACTAAAGGGCTACATACAGA
ACAAAACGAATGAATCTATATTCTAAAGTATGTCTATATACATTCGTATGTAGTCCCTCT
AGTAAAATCTTTTAAAAGACTTNNNNTTAGGAACGGAGGGAGTATAAGTATATGCGGCTT
ATGAGAAAAACAAAAACAAAAAGAGAGGATATGTACAAAACAGACGGCGTACGTGATACT
TATTTTATTTTCTCAGTTCATAGGATGGCTCACACCCGACCGTTTTCTTATCCCTGCTTC
CAAAATTTATAGATGCTGTCTACCTCAAACTTTGTAGAATGTATCTTGGTATAAATCCAA
GACTCATAGGAGTATTACGTATACGACAGTCATACTAGCAAGAGGGGCACAAGCAAAAAT
ATATTGGTTTGAACTTTGAACTTCAAAAGAGGATTCTAAACCAGAGTCATTAAAGAACAC
TCTCAAATTCTTCTGCCTTCCAAATCCCTTCTAGATCGACCCTCATCCTCCCGTGTCGCC
CCCACCTGGCGACGTGAGGAACCCTAGCCGCCGACCCCCAACCCCTCCCCTCCGGCCCCT
TCCTCCCTCGCCGCCGCCCCAAGTCGCTGCCCGGCTTCGGCATGGGCGGTGGCGGGATCA
CTCCTTCTCCTCCTCGAGGACCCCCGGTGGTGCGTGACGGCTGGTCACTGGAGGCGCCGG
GCTATGGCAGGGCTCGACGACTTAGCTCCGGGCGCTTCTGGTGGTGGCGACTCGTCGTGA
TGCTGCTAGCGGACGGTGCGTGTCTTTATCCTCGTCAAGCTGCGTCACGAGCGATGGAGA
ACGGTATGCTGCCCGGTAAGTTGCGTCACTGGCGGCAAGGAGGTGATGGCCATGGAGCGG
AGGCCATTGCCTTAAGGAGTCCCATGTCCGAGTCGGCGACAAGGTGCGTCATCATCGACA
ACATGAAGGCGAGTCACCGGCAAGTTGCGGCACCGGTGACGAGTCATTGGCAAGTTGCGG
CACCGATAGCAAACATGAGACAACAGTGTGTCATGTTGGCATGCTCGTGGTGAAGGCATA
GGAAGAGTGGCTCTTGTTGAAGCTAACGGCCACGACTGCAGTCAGCGTGACAAGATGGCA
TTGGAGCCGTCTCCGTGTTGCACCGACGACATCGACGACCATGGGTGAGAGGAAGAAGTA
ATAACAAGGTTAAGAGGGTGATTGTTAGAGTTAACCTTGTTATTTATTTTTTATCATATT
TTGTGGTGCATGTAGTTAAGTCATGCAACTAGGAGTTGCGGCTGTGTATGACGTAGAGAC
GTGATTCCCTTACACATGCAAAGCTACTAGAGTTAGTTAGTTGCATGCATTTATTAGTTA
GTGGGCTAGCTAAAAGGTTGGTTACCAAGCAGCTAGCTTGGTAAGCTACCAACAAACACT
TGCAATCAATCAAAAAAAGCTAAAAGGTTGGTTAGTTGGTGTGTGGGTTGAGTTGAGTGA
TTCTGCCAGCGAAAGGTAACAAGTCTCCATGTTAGCTGAGTCGGTTAGAGTAGTTGGTTA
TTTAAGTTGAACAAGTGAATGGAGAAGGAGCCGTGAGGTCTGGTGAAACAAGGTAGTGTG
CGTATGTGGTAGTAAAAACGAAGCTAGTTTCTCCACGGTGAGGTGTGTGTATGTGTGAGT
TTCTTCTCAGGCGTGTGTGTGTTCTTGAGAGAAAGTACAAGAGGGATGATAGAGATTGAG
AGAAGAGTGAGCTGTGAGAGGCAGCCAAGAGGAAGAAGAAGAGGCGCCAGCAGTGCATAA
CATAAACAGATGCCTATCGCAGCGGACGCCCGCCCGACTCCCTGCCCGTCGCGCTGCGCC
GGCCGTCGCCGCCAAAGGCGCGACCCCGGCCATTGTTGCGACCTTATGGCCTCGCGCAAC
GCGGCCCGTCCCGGCTGTAGTTCCCGCGTCTGCCCGCCCGTCGCTCCGTGCCGTTCGTCG
TCACCCGGGATCCTGCATCACACACCATCTTCGCCTTCACTCGCCGGCGCCTCGACATCG
TCGAATGCCATAGGGCTACCGGTTGCCGTCCCCTCGCCGACTACCGGGCCTCCCGACTGC
CTTGGTCTCGCCATGGCTCACCGCTGCGCTGGGCCTGCCGTCTCCCTCGGCTTGCCGGTT
GCGCCAGGCCTTCCGGGTGTCTCGGGCTCCCCGGCCCATCGCTGGCCTACTCTGGCATGT
CGTTCTCCATTGGTCGCCGTCGCCTTGGTCTGCTAGGCCCTGACCTCGCCTGCGATCGGA
TTGATCACCCGCCCACCGCAATCACCTCCATCCGCGCCGTGCGACTGACCTGATCAGTCA
GTTGCATGCGTCTCCACAGGTCTTGTGAAGATTGTCTCGAGTACAACCCGCCCCTCCACC
GATCGAGCAACGGGCTACCGCTGCGTTGCCTCGATGGGCCGCAGCGCCGTCGCCCAATGG
TTCTCCCCGCGATTGCCCCGACCCCGCGAGCCGCTGCTAAACCGCCCCTTCGGGCTGTAG
TGCAGCGGCACGCGGTCCTCGCCGCCGCACGAGGCCGTCCCCATGCCTGCATTGACCGGC
GCACTGCCGCTGCATCGCCCCTTTGGACCGTAGCGTTGCGGCACATGGTTTACGCCGCCA
CCCCGAGGTCTTCCCACCATCGCCACGACCCGTGCGTTGCCGCTTCGTCGCCCCTTCGGC
TCGTCGCAACGCGGCGCCCGCTCCACTCCT