morexGenes - Barley RNA-seq Database

Contig contig_50013
Source Contig contig_50013
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_50013 (7580 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_50013

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_65292	3	2899 bp	MLOC_65292.1	Available	Available	LOC_Os03g18890.1, FRAME:-1, EVALUE:0.0, 13103.m02262 protein glycosyl transferase 8 domain containing protein, putative, expressed
CDS Structure of MLOC_65292

Contig Sequence (7580 bp)

>contig_50013 7580 assembly3_WGSMorex_rbca.fasta
CATAGATGTATCAACTATATGCGTATTATGTGCTAGATTAGTTCATGATCAGTATGTCAT
TAGTCTAGTCAATGTCATGCTAGTTATTATCTCGTGGATTAATCTACTCGAAAAATTGTC
TATTTACTCAACACTTTCTACATGTCAATGTATCTATTCCTCTGACCATAAGATCATGCA
ATTCACTCACACCGGATGAATGTCTTGTGCGTATCAAACGTCACAACATAATTATGTGAT
TATAAAGGTGCTATATAGATATCTCCGAGGGTGTTTGTTGAGTTGGTCATGGATCAGGAG
TGAGATTTGTCACTCCGTGTGACGGTGATGTATCTCAGGACCCACTATGTAATACCGCAT
CGCAGTAAGTTTATAAGCAACATGACCAAAGAGTTACGCACGGAATCTTATATTATGAAA
CGAGTAAAAAGACTTGCTAATAACGAAATTGAACATGAAGACTTGCTTGCCGCCGCTGTG
CCGCACAGCCTTGCGCCCGCCTGGATAGGCCGCGCCGCAGCGGCTATCCCCGAGGAGTGG
AGAAAGGTCTGCAGGGGGGAGGGGGAGGGATCTTTTACTCCTACACTTATACTTGTAGTA
TACCGTATAAAAATGCTCCACGATACGTACTACCAGCATGTATGCTTGTCATGTGGAGAA
GGAGGCACTTGCCACGTCGCACGACAGGCAGGCTTTGTCACGTTCTCTTGCAGAGAGAGG
CACCAAATGATGCTTAATCTTATCCACATACGTGCAGCGCGGATTGATCATGTAGCGGCA
AGGGCCTCCTAGCTTGTCATGTCTATCTGTCTACGCTTCTTGGATGGTCCATGGCATAAG
TGGGATATGATCGGATGGCCATATGCTCGCTTCGTATGTGTGGGGCAAATCCTGATAGCG
GTATGATAGTACCATGTATGCCTCTCAATCACATTTTTCTGTTTGGGTGACCAGAAAATG
GCAAACGTACCAGGCATGAGAGAAATACGGTCTGCTAGATCTTTCCGGTCTTGCTGATAA
GTGATAATCAGCGATTCCAACTTTAATCTTTTGCAGAAAAGGAATGCACGGTTGATGGAC
GGCAGATGAGTGCTCATGTGGACAGCACCAACCCCAGAGGGCGAGACTATATGATCGGAG
CTGTACACCGGTATGTACCAGCAGCGTTATTGCACCCAAGATACCTGACTTTAAGTGGTG
ATGTGCTAACGTTGCCGGGTGCCCAGCAGAAGTGAACAGGTCCGTTGTGCTACCAAAGGA
GCGGACGACGAGCCCCTGCATACAGTTGAATCTCATAATAGAGCCATTCTTCCGGTGTGC
TGCTTCAGTTGAACACACGGGGAATGCGCTCAACATATGATCATCGTCACCCACCCATCT
ATGGGCTCGCTACGGCAGCATGATTGCACGGTTATGACAGTCCCGATTCTTTTGTCCCGG
TTTACACGTACACTCGAATGGGTGTATTTTTACATTTTAGCAGAGTTTCTTTCTGAGATG
TCACTGGACAGGGACACGAGTGATTGCTGCCTCAGCTCTCGTCCATGTGACATAGTAATC
GTCAATTGGCACTGTGATGACGAAGCTTAAACAATGTTTGCACCGAGAAGCTCAAGCCCC
TCTCCGCCAGCCTGTGAACGAGAGGCTTGCTTCCGGGGAAACGCAAGATGATTCTCTTTC
TTGGAAAAGATGAAATGCAAAGGGAGGAACGTGCGTGTGATCTTTCTTATCCCCACATCT
TAGAATCCCTTGCTCCCGGGCAACCTAAAAAAGAGAGGTCAACAACAACCCCAAGGCCAA
GGGCGGGGAGGGGGGAGGGGCCTGTACTTTCCTGGGTCCATACGCCGTCTTTCTCAGCCA
TTAGACCTGCCCAAAAACCACGTCACTGTTCATTAAGCAAAGAGCCTAGCATACCACGCA
AGAAAACACCACACCGGTCTCCGTCTCGTTTCGGTTTTCAGCACGGCCTCATCATGATCG
TCATCATCATGGATTCATGGCCCTCTCCCGAGCCCGAACAAGGCCGTGCCTCCACCCAAC
ACGGCGGCCGCACCGCACCTACCAGCTGTGCGTGCGTATCCGGCACCACCACAGCAATCC
AAGCCACTTCCCTTTAGACCCAACATTTGGATGATAATACATTTGGCATGTCACGTACAA
GGGGCCTTGCCGATCACATTTGGAGACTAGCTTTTCTCCTCGCGCGGAGGCGGTCGGTCG
GTCGTGCTCGGGCGACGCTGACACGCCAACCGCCGGTAGGCCAGCCCACCAGAACCCGGC
GCCTGCAAGTGCACATCCGTCGATCCCGTGGCCATGGCCATGTCCATGGAGATCAAGGAC
CACCCCGTGTCGCCGTGTCTCCATCGGTCGACTGCTACTAATAGAGTACTCCGATACGGC
ACTCCAAGGGCAAGGGCAAGGGCAAGGGCAGGCAGAGGCAGCACATATCAAGGGCTCCAG
AAAGGCACCAACATTTTGTCTCTCTGGCCTTGTTCTACCGTCCCGAGACCGACGGCAAGA
AAGGCAGCATGGCTTTTGGCAACGAAACACACACACCCAAAACAATGTTAGTGTTGGCCC
GATCTGTAGAAAAGCCAAGCACCTGCAGGCATGCCAACCAAAAAATACTCGCTCATTTTT
ACTCGACTCGACTAACAACAATCTATGTGCGCTGTCCGTACGTGCTTCAGTGCCACGAGC
GAAGCCAGCTGTTCATCAGATCAAAACGAAACAAATGTTGTCTGTTGGGTCCTCGCACAA
CAAAAAAAGGGGCGGCTAAGAGGACGTTAGGTGCACCAGAACTCCAGCATACAAACAGAA
ACGCAATCAGATAGGGGGAGTGATTAGCTTAGCGTTAGCTTTACGAATGAGATCAGCAGC
GAGCCTCTTTTGTGTCAGGGACTCGGAGAAGAACTTATACCGCGGAATGAAGGAATCACA
AGGAACGCATCAGTAGATTTCTGAACCCGCAGCAGGGAAAAACGCAAAGGAAGCAACACG
TGAAAAGGTGGAAAAATGCCCGTCGGTTGGACCGTCGCCGTCACGCAAATCACACCGGAG
CGCGGCTGGCGAGGGCAGAAACCGACGCGTGTGGCGGGGCACCGAACGGGGACGCGCCCT
TCACCGCCTCCCCTTGCGTCGGGTCGGGTGACTGGGACGACGGCGAGTGATGAAGGGGCC
GGCCGGCGACCCGAGTGGTACGATTGATTCCAAGGAACAAATGACACGAAATGTTCCTTC
AGCAATAGCAAATACAGTAGTAGCGAAGAAACATATGGTTGGACGCACGTATGGGGGCGG
GAGGTCGACAAATAGATACCAGATGCTTAGTGGGAGCTGGCAAGGAAAGCGAGATGATGA
GAACTTTTAGCAGGCCTCTACTCTTGTACTACTACTAGTGGCGAGGTGCAGATGAAGGGC
TCTGGACAAAACAAGAGAAAAGGAAAAAATCTTTGATCAACGGAGAGGAAGGGCACAATA
ATGATTTGCAAAAGAATAAAGCGGCGAGCCCAACAAGTGGTGAGGCCCCACCGGAAAGAA
AATAAAAGAAAAGGAGACGGGCGGTATCCCGTGTTGGTCGCTGCAACCCAGAGCAGGCTC
CACGTCGTCCCTGCACCGGCCATCTCCCCATCCATCTTTCAGTCATCGGGTCAAGAGCTT
AACGGAAACTCTCTCCCTATAATTAACTGATGAATGATGAATGAATCTATCGGCTAGTGC
TTAAGCTGAAAGTGGTGGTTGGTGTCAGGCTCAGCTGTCGTTCGTAGTGCACGAGCCACA
AAGAGAGGATTCCAAGTTACTCATGTCTGCCAGCGATTTTTGACATGATCCGTCCCAGGA
ACCGGTCCATGGAGTACACTCTCCTGCCCTGCCAGCAGCATTAAGGCTCGTGCAGGTGTT
GCATTGCATCGGACTGGCTGACTCTTCAGGGAGATGGATGTGTGAATTGAATTGATTGCC
ACCATTTGCCATACCAAGCCACCAAACAGCAGAGAGTGAGATATTGCCATTTAAGGGGGA
GACGAACAACAAATGCTTGCAAAGTCTGTTTCTCTCCCTCCATCTCTCTGCTTTTATTTA
TTTATATATTTACTTATCATCATCATCATCATCATCAACAACATGATGTGATGATGGGGC
TGCAGCTCTGTAGAGTGTGGTATGATACAAATCACCTTTCTTTGTAGCACCAAACAAACG
ATCAAAAATATGTATGTGGGACAGCAGATCGCAACTCAGCACCAACACCAACAATCTAAC
ACAAAAACATTTAGTTGAACAGAAGAAGAAATTAAAACGGGAAAGAGGAGGACAAGAAGA
AGGAGGAGAAAAAAAATTTATATAGGTTTTTGAACATGTAACGGTGACCAAGAATTAGAG
CTCTCAGGATTTATACGGGTCGGCGAAAGAAGGAAAAGAATCTTTGTAGTAGAGTAGTAG
TCTGTTTGCGGTTGGTTACCGGGCCGGCTCCACGGCGGCGGGGCCGTAGAGGTCGAACGG
CGCCCAGAGCGCGTCCAGCGGGCACGGCCGCCCGCCGCCCAGCCGCGCCCACGGCTTGCC
GGACCCCGACCAATGCAGCAGGCTCACCGGCCCCGGGTGGAGGTCACGGCAGCTGCCCAG
GATGTTGTCGCCGCCGAGGCCGTGCTGGTTCCACCGGTGCTCGATCGCCGCCACGTGCCC
CGCGAACACCAGCAGGAACGGCGGCAGCGACCCCAGCTCGTAGATGCGCCCGGGTGGCGA
CTTCTGTATCTCCATCCACCGTTCGATGCGGCGCGTGTAGCCCGCGTGCCGCCACCGCGC
GAGGTCGAGCACCATGACGCCTGTGTTGAAGTAGCACGGCCGCCTCCCCTCGAACGTCCC
GGCGAACTGCTCCTCCGACCAGAACCGGTCGGTGAAGTACTTGGTGAAGTTGGCGTGGCA
GTACTCGGGCGCGCCGACGGTGCGGCCGCCGAGGTCCGTGCGCCAGAGCTTGGCCACGTC
GTCGACGAGCACGAGGTCCGAGTCCAGGTAGATGACGCGGCGAACGCAGGGCTCCAGGAG
GTCGGCGAGGTAGTTGCGGGCGTAGTTGAGCGGCTCCTCCAGCGCCTGCCGCACCGACGA
CGAGATGAGCCCCCGGACGCGCGCGGGGTCGAAGTAGTAGACTTTGAACCGGAGCTGCGG
GAACACGGCGCGGACGAGGTCGCCCAGGCTCGGGTCAGAGACGAGGAAGTGGAAGAAGAC
GCTCTCGGGGCACATGGCGTGCTGCACCACGGAATGGACCGCGGCGACCGAGCCCCTCAG
GTAGCCCTCATCCAGAGTAATCGCGATGTGGACGAGCGAGGGGTCGCAGACATTGCCGGT
GCCGTTGCCGCAGTCGGCGGCATTGCGGAAGGACGGCGCGCGGCGGAAGGGGAGGCCCCT
CGCGCCCCCGGCGATCTGGCCGGGGAAGCGGACGTGGCTGTCGAACTGCGACGACCGGAT
GGCCTCGGCGGGCGGGAAGGACTGCAGCGACGGCGACAAGACCACCATCAGCATGGCGGC
GGAGAAGAAGCCGGACAGGCGCGCTGCCCATAGCATCGCGCTCCGGCGAGTGCGCTGCCA
CCGCTTCCTGGCGCCGGGCCGGCCACGGCTGCTGCTGGACCACCCCAAGACGGCGTGCAG
GTGGGCGATGGCGTCGTCCAGCGGCAGCGTGGCCAGGGCTGGTGGCTAGGCTAGGAGCAA
TAAAAGGGGGCAGCTTGCGGCAGGGTCAGAGCTCAGAAGGGATACCTCGCCTCCGCCTCC
GCCTCCTCCTCCTCCTGCTGCTGCTGCTGAATTGAATCGCGTCGTGGTTTCTTGGCTGGC
GGATCGGCGCGTGGAGTGGGGGAGAAGCGAGAGGGCATCCGAGCGAGGCGTGGTAATGGG
GAGGGAGTGGGGTTGAGACTTGAGAATAGGAGGCGACGGCACCCACCAACCCACCGCGCG
GCGACAGGCGATTCCCCCGTGCGACTGCGAGGCTTTTTCTGCAGCGGCGGTGCCGTGGTG
CCCTGCTGGTGGCGGCGGCTTATTACTTCTGCGCTCTCATTTTGGGGATTCAGGGGGTTT
TTCTCCCTCACCCGCTTTCCCTCCCGGCTTTTGACAAGGAGAGGAGAGGCAGCTCGCCTG
GGTGAGCGGCAGCGGCCGCTCAACTCACTAATCACTTTGGTCAATTTTCAATTTTACAGC
TGCTCCCGCTCATTTTTGAAACATTTTGTAGATATATATACTCCCTCCCTCCGTTCCTAA
ATATAAATCTTTGTAGAGATTTCACTAATGGACCACATACGGATGTATATAGACATATTT
TAGAATGTACATTCAATCATTTTGCTCCGTATGTAGACACATAGTGAANNNNNNNNNNNN
NNNNNTATTTAAGAACGGAGGGAGTACATCACAGATTAAAAAAGTGTCTTTTCATGGCAT
TTTAAAAAGTGTTAATTATACGAACCAACCAGTGGTTAGAAAGTCAGAGAACATTGGTAT
CCACAGAATTCAAGTCCTACCTTTGACATTGGTGCTCGTATTTTTTAAATTTATTTCAAA
TCTTTCAGTGATTTGCGTTCATTTGGAGAAAACGGTTTCTCGGTTATGATGACGTCTCTC
TCGACATCGTAAATCTTAAAATGATGTACCGGTTTAAAATACTGTACAAAAAATGCGTAT
GTACGTTCGTAAGGATGAGTTTATGTACATACGTCTACGTGTGTATCATGTTAAAAAAAG
TTGATTATTATGTAAACTTTTTCTCTACATATCACTCGCAAAGAAAACAAAAATTAGGAA
GGCATGTGGGCTAGACACTCTAAACTTTGGTAAAACATGACGTAAAATTGGTATTCTTTT
CACCATAGGTCCATAGTTATGATCGACTAAAATAAACAATACCCACAACCTATAACAAAA
TAAATAGTTTATAAGAATAATTGAAAACCTTAGATGTACCTCAAGACGGTTTGAGAGCTA
CCTAGATTGAATAAAACATTCACTGAGAATGATTCTACGAAAACATTCGATATGGGAGTT
ATCAAAATCATTAATTAATGAGTATTTTTTTAAAGATCATTCTCACCTTCAAGGTTATGA
CGAGTGATGTACTGCATGTGTACCACTTGTTGCAATCTTATGGGCTAGACACTCTAAACC
TTGGTAAAATAGATGTAAAATTGATATTCTCTTCAAGATAGGTCCATAGTTACGATCGGT
TAAAATAATTAATACCCACAACCTATAACAAATTAAATAGTTTATAAAAATTATTTAAAC
CCTTAGATGTACCTCAAGTCGGTCAGGGAGCTACCTAGATTGAATAAAACGTTCACTCTG
AATGATTGAACGAAAACATTCGATGTGGGAGTTACCGAAATCACTAATTGAAGAGTATTC
CTTTTAAATATCACTCTCATCTTTTGTGGTTGCAACAAGTGGCGTGATGGGGTTATAGTC
CCAGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAAGGGCTACCCTTCATAAGGG
ACANNNNCCTTAGTCAGTTCCGACCGAATTAAGGACTTCCCATCATCGAGTCGGCGCTGC
TTCCCCCCTCACTACGCCGG