Contig Data
morexGenes
Links



Map Locations of contig_49997 (9151 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_49997

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_65279 22 5604 bp MLOC_65279.7 Available Available LOC_Os02g56950.1, FRAME:-3, EVALUE:4e-173, 13102.m06548 protein expressed protein
MLOC_65277 2 947 bp MLOC_65277.2 Available Available LOC_Os02g56940.2, FRAME:+2, EVALUE:2e-21, 13102.m06547 protein expressed protein
MLOC_65278 3 1564 bp MLOC_65278.1 Available Available None





CDS Structure of MLOC_65279






CDS Structure of MLOC_65277






CDS Structure of MLOC_65278






Contig Sequence (9151 bp)

>contig_49997 9151 assembly3_WGSMorex_rbca.fasta
GGGGGGGGGGGGGGGGGGGCTTTCAGTGAAAGAAATATATTTAGGTGGTTGAGGGCCTTT
TCCCTCCTCCCCCGATGAAAGTAAAAAAAAAGGCATTTCGTCTTTCCAAACAAGATATAA
AACCTGACAAAACTCAAAGAAACGTCTAAAAGCCGAGGTAAGGACCAGGATCCAGTGTGC
TTCCACGTCATCCCAATCCATTCCCACCGTCCCCACGGCCCGCTCCCTCACCACACTTTC
TAGTTTCTACATAGAGTTGGCGAGCCGCTGCAGCGGCGACCGCTCACAGACGCATCATTA
TCCACCTCCAGCCACGCCGGTGGCCACACACACACACACACACGGACACACCTGCGCCGG
AGCTCAGACCTCAGGCGTTCCAATGGCGGGGGTCGCGTGCCCGGTCTACCCGTGGCCGAC
CGACGCGTAAGCACATCCTCGTCGTCACGGAGCTCTTCTTCTTCTTCTGAATATCTCATG
GGGATTGATTGCTGGTTGTGATGGAGCAGCAGGGCGCAGCGCGGGGCCAAGGTGTTCATG
CAGAGGGACTGCGCCGCGTGCCACTCCGCGCTCCCCTACGCCGGCCTCCGGGACGCGCCG
GTGCTAGGCCAACTGGGACCCACTACGGCCGAGATCCTCGTCGCCGCCGCCACGGCCACC
GAGGAGGCGATGCCGCCGCCGGCGACGACGCCGCTCCAGCACACGCCGGACCTCGCCACC
GTCGTCACAAGGGTAAGCGCACAGGCTCGCTGCCATATATCGCTTCTGCAACTGCTAACA
TGGTGCGACCATCTACAACCATTTGTTTGTTTCTCTTCTTCTGAACAGATCCAGGGCGGG
CTGCGCTGCAACCTCTACTCCACCGGGACGGCGGCGACGCCCGTCAGGGCGATGCTCGCC
GACGGCGCCGCGGTGGCGTGCCAGGAGCTCAAGAAGAGCCCCGTCTGGCTGCAGTTTGCC
CAGGCTTTCCAGGCAGCTTGATGGGTTGGACGACCCAATCTTCAGTGACACGCCTTGCTC
TGCCCAATCTCATCTCATTTCTGTCCAAAACGATGGTGTGTCTGTCACTGTCACGTATGT
ATAAATCACATCACATTGCACCTTGTGCTGGATCAAGCAGTATCAAAATAAAGCACTCAT
GTGCAGCCGTTCCATGCTAAATTCATGCATTCCAGAGAGGCCATGAGCTCATGTAGGGCG
GCGCTGGCATCGATCAAATATACATAAACTGCAGTGTGATCATAGTTTTGTTACGAAGAA
AGAAATGTACTGCGTTCCAAATCAAAAAATCTGTGCAGCAAAGTCAGCCCACAATAATTA
CATTGCATGATGAAAAAGATCAACCGAGACGGAAATTAGATTAGGCTATGATCCTCACTT
TCTGAGCTACTCTTGTCTCCGATCTAGCTGGCTCCTTTTGTTTGCAATTCCGAGTAAATT
ATCCGCATTTATTCCTTTTCCGGATGGCTCCCTTCGGCCGAATCGGTGTCTGCCGTTTGT
TCTCTGTATGCTTCCTTGTGATCCACAGCCGGGGTGCTTGAATGCTGGAACCTCGGTAGT
GCACCGAGCTGTTTTAGGCTCTCGCCCTGCCTCGCGATCACCATCTCCAGGTACTTGCTG
TGTTCTTCTACTTGCAGCTGCATCTTTCTTTGGAGCTGCGGAGAGGAAAAAATAAATAAA
AAGAGAACCCCAAATTACTAAAATAGATGGAAGTTTGCACGTCTGTTCTTGCCAGTTCCA
AGGAGTGAAAATGTGCATACCTCAAGCTGTGCGTGAAGTTGCTTCTGCAAGCCAATCTGA
GTTCTTAGCCCTTCACTAGCCTCCATGTGTCTGCACCAAGTGCAAAGTGAATAATTAGAA
CTCTGAAACTCGCACGCGCACACGCACACACACGCGCACACGCACACACACACACACACA
CACACACACACACACAACATTTTTTTTACTGTGGGCTAGGTATTGCGCCATTTCATGGAT
ACCTTTGAAATATGTATGGAGCTAATATAAGTTACTGATGGCATACGAATCTTCCAGGTT
GGTGCACAGGTGGTACATATAGTACAACATAAATTTACGTCGAGACAGTCTTTACAACAG
TAATAAAAGCAAAGATATAAATTTACGTCAAGACAGTCTTTACAATAGTATAAAAGCAAA
GGATACATCAGGTAAAGATTATCTCACTTGATGTTCTGGGAGCAAACTTCATCCATGTGG
TTGCTTCTTTCCACTGAAGTGCCTACTAAAACAAAGAAAATAAAAAGTAAGCATAAAATC
CTACATTTCAACAATTTTATATAAATTTGACTAGAGGCTAGGCACAAATTATATAATGTA
AAAAACCATAAACAATGGTAATGGTAAAGTAACAAGTCAACTGAAGTATCCTAGTTCACT
ACAATATGATAGTCAGTGTATGTTTTGCAATGATGACATTAAACCAGCGTTGCAACATAG
AGAGACACACAAACCATCAGATGATTCAGATTGATGGCGAACTGTACGATACTTCTGCAA
AAGAATAACCCGTGGCCATCAGGAAAATACAGAAGAAATTAAAACTAAACACTGAAAACT
CAGAAGGAACAAATGTAGACCTGTAGATGGCTTTTTACATGGTATATAGTTAGCCCTTCA
ACCTTCATAACTTTCTGGACTGCTTTTGGAGTTGCTTCTGCAGGAAGAGGGCTTAGATAA
ATGAGAATATCTAGCAAAAAGAGTACTACAACAAATACCAACATGACTGGTACAGACAGA
AACATGTTAATATTTCCAGTTTAAAAGGATACATTGCCCCATACAATTTCATCAGTGAGC
AAAGCACGATAAGTAGAAAAATAAAGTGTAAAAAAAACTACATTTAAAAAAGTGTAAGAA
AGCATCAGTGATCATACTTTCACTTCCACCAAGCTTGTCAACGGCATCAACAAACTTCTC
ATGGAGCTCAGGCGTCCAGCGCATCCTTGACTTGGTTGGAGTAGTGTCTGAAGAAGGTAA
ATTGTCACTGCAAAGTTCATCCACGTTGAAAGAATTTGATCTGTTTTTCTGCCCATGAAA
ATATGCATAATTTGATGGTGTTGTACTTGCATCAGCTGCCTGCAAATGAGGTGGTGACTT
CATTAAGCATGTGGGACAAAATCAACAACATTATCTGAAAAAGGTTGGATCTGGAGCTGC
AAGGCGGAGTGGAGTTCTCCCAAACGGGGCCCTAAGTACAATGATGAAGTGCTGGTCATC
GTATTGTTTTGCAGTTAGTAAAGCCAAGAGAAAAGAGAGGAGTCAGGAGACTGAAAACTC
CTAGAATAATTACAGCAAATCACCACGCAAAAGAAACAGTCAAATGAGATGGATACCTTA
AGCACAGATCCACCAGATCCTGAACTTCTCAGAAATTGCTCTGAACTCCCAGATGAGTAC
CACTCTTTTTGCTCCGCAAGGTGGGTAATATGATCAATTGTAATGATCTCTTGGCTTTGC
TGGCTAACAATCACGTTTCGCCGATCCGAAACATCAATGGTTGCTGGATATTCAAATACT
CCTGGGAGTGGTTCTTGACCCCACCTTATCTCTTCAGATACTTTGGGATAGGCCATCCTC
AAATAATCTGGATTACCCGTGTATGATGAATGTGCTGATGGTAGTGAAGTGTCACAACCA
GATATTGCAGTAACATGTGATCCAAAAGACAGTTTCCCTCCAGGTGATCCATTGTTGATA
CGAAGATCTGAAGTGAAATTGGAAGGTGATACATATGGCTGACATAAGGTATCGAATGAG
GTGATAGAACTACTGCACAGATCCCTTTGACTGTAAGATGTCCTATACTCTGGAAAACTA
GGAACTATGACTTCAGAGAGTACTGGTACTATATTAATATCTGATGAAAGAAACCGAGGA
ACTTCTCCATTGCGAAACTGACTCATTATTGCTGTATGGCCGTGTGCAATACCCCTTGGA
TGATCCACCTCAGTCCATTAAGATGGACCTTTGATCATATCATTGGGGAAGTGTATGGGC
CTATCCAATTCTAACTTGGATATTGAAGAAATATTTTTCCTGCTCTTGTTCAGTCGTTGA
GATGGTCGCGAGATCTTATGGGTTCACCTCTAGCCNNNNNNNNNGAGATCTTATGGGTTC
ACCTCTAGCCTACCCCANNNNNNNNNTATGGGTTCACCTCTAGCCTACCCCAACNNNNNN
NNNGGGTTCACCTCTAGCCTACCCCAACTTGNNNNNNNNNAAAGGCTTTGTTGTTGTTGT
TGTTCAGTCGTTGAGATAATTGGAGTGTCTTATTTTCCAAGGTTCCTTATTAGCGAGAAT
TTGTCTTCTAGGAATATGCAAGCCAATACACAATTATTACTGTAAGCCCCCAAATAGCAA
ATCAGCGAGGTTCTTCAAATTGTGAATATCAAGCAGGTTATGTATCTTCGTAAAGAAAAA
TCGTAGTTGAACACCGGAAACATGATGTGAATCGCACATTGGTAAGGCCAGTTATACTTC
TAGAGACCGAGAGTAAACTCAAGATTGTAATCAAGAAGTAGCAGGAAGCCAGGAACAAAC
TGCAAAGGATTGAAACACATGTGCAACCTGATTTGCAGATTCAACCCCTCCTTAAACATA
AAAGATAAAAAGCAAAGAAGTATTCAAAACTGAACAGAACAAGCCCCAACTATTGCAGCA
ATTTCCAAACGGAACATAATTAACGAAATAGAAGAACCAATAACTAATATTCTTTTTTGA
AGGGAAAACAAATAACTAATCTGAGAGAGAAATCTGACAAAAGAATTGCAAAAAAGAAGA
GTAACTTGATGTGGATTCTGCGTTGCTGTTACAGAATTAGTTGAACCTATGTTGAAACTT
ACTTGTTTCTTCGGAGAATGGAATCGGAGAAGAACAGGGCTTAAAGTCTTAAGCAAGGAT
GTGATACAAGGGTCATTGCAGGGGCTAAGAATGGAAAGAAGTTCCATTCGTTGTGTGCAT
ATGGGAGGGTAGGTGGGAGCTATGGCTCTAGAGGGGGACCCTGAATCTGCTAAATGTATC
TAAAAATTTCTATAACCATCAAGCTGATAGTCTACCAATATTTTAAACTGACTCCATTTT
ATTTTAAAAATGGGGACCACATGGAGTTCCTTCCTGTGTAATGGATATTTTAAAACCTGC
CAGCTCTTGACTTATTGTATGCATCAACCACCCAGAGGTAGATTGATTAGAAAAAAATTA
AAGCTTTACAAGGCTGAACATAGATATACATGCTGCCAAGCTGGATTGATGGTACTGCAA
AGGGAACTATGGCAGCAGATATACAGCTTAGTCTCAAAAAAGAAAAAGATATACAGCTGC
TAGTTTGGTCTGACCGAAATACAGATGTGAATTAACCTATTACACTGATCAGTTAGGAAG
TTGTAAAAGAAAACTGACACGGTTACATTAAAGCAATTTCAGTAAATGGTAGAGCTATCT
TGCCCAGGCCTTATGCTTGGTTCTAAACCATGTGGATGAAGCAATATTCCATTAGACAAT
AAGCTTGCAATCATGGAGTATCTTTTTAACAACTAGGTGCTTTGGAGTTGACAAACCAAA
TTTGGCATGTAACAGAAGGTTGTATAAAAGCTGGCATGACAACGTCTCTTTCTAAATTAC
CTTATCCAAAACTATGCATCTTCTCACTTTTTGTATGAAAAGGGACAGCTGGAATACAGC
ATTTCATAAATAGTTTATTAATCATGCTTTAGAGTTCTGACCTGGTGCAGGTGGAGTCTA
GAAGCACTAAAAGGCAAAATAATAGGCAAACAAATGTCAGCTGCTTATTGGTTAGATGCA
AACTGGAAAACGGTTATCTTCTATAACTCCGTCAAAGAAAAGAAATAACAATCCCGCTGT
TGATTTAAGTAGATCAACAATATGTGCATCATGTGATACGAAATCGATATGTCATTCATA
TTTTAAAACATTGTCCTATCGTTGTGAATCTGTAACTATGAAGACTTCTTGTACAAGTTT
ATGGCCAAAGTTTGACTTTTAAAAGCATGGACACCTTATGTAGATCAACAGAGGGAGTAC
TTTGGTTGGTCTTTATTTTCTTTTCTTATAATGGGATTCGCCTACCATGAATCTACCAGC
CTACCAGGCTAGATTAAAGAGACCGGTTTGAATGAAAATCAAAATAAATAGAAAAATATG
GCAGACATCAGCCAAACCACAACTGTCCAACAAATACCCTAGAAGACCTATCTCTCGTTG
GCCCAAAAAACATGACCAAAAGATAAGAAAAAGCATGATGAAAATAAATCACCTACAGTA
AACATGGGTTGGACCAGAATATAGGTGTAATTCATCATAGATTGTCAACTTGGAAGGCAG
AAAAGGAGGGAAAAAGACCTATTCGGTCTTCATATTTTACCCGTTTATATGAAGCCACTG
TCGATCAATAACAGTTTTCAACTTTTTATCATGCAGAAAGTGTATTGATTTCCTGCTGTT
TAACGTTCATCATATCACCGTCAATGCACATGCAAAACAATTTACTGCAGCCAGCCTGGA
AAATCAATTACTTGGAGTTGAAGTGCACATTGCAAATCGCATGTATTGTCTTGAACTACC
GCCACTACTGAACCATTAGATGAGGTTGTTGAACATGGAAAGCGTAGAGACATTGAATCC
TTTCAGCAACCTCACCTAAAATGAAGAACAGGTATTTTTAGAGAGTTCGGAGCACTGGAT
ATTTGTTCATTTGAAATTTGAGAAACAAAGTAGTTACAACTATGAAACTACTTACAGCTA
TCATGTTGCTCTATTCCATCTCTTCTGCAATTACATTTCCTGAAATTGAAGGAGTAACAT
TTCATGATGAGAACCGGCATGAAAACTTGGAAATTTAACATAGCTTATACTAGTAAATAC
TTGGCTATTGGTAATACCGTTCTGTGGAAACTGCTTCATCAAATTGCTTATCTATTTCTG
CAAGGTATATTTCAAACAAGGTCGACCTACATGATCCAATGCATATATTAAACTTTTTAA
AGATCACACAAAATCAGCAGGGACACACTTCAGAGTAAAAAGCAAACAGCTCACCGTGGC
GGAATTGCTGCAGCGGTAAGAACTGGAGGTAGAAGCCATAATATGTGCGGTTTATTTTCT
AATGACTGCCTTGCATACTCAAGAATGTCATTTTCCTGTTGGAGTTGAAATGTTTGGTTA
AAGAGATCACCTTATGTTTTTTCTCAACCACGCATCAAAATGTGGGTTTTTCGTACTAGA
AGGACCACACCGAGAAGACGCAAAAACAGATAACATCATTTCAAGATGGTATGCTAACAG
CTTCTAGAAACTGAGAGGTCTTAGTGCAAAAGGGAAGATGATAACAACAAAGTGGCAACT
GAGAAAAATATTTTACGTCCTGAGAAACCTCTGAAAGGCATGCTCCTTATAAATTATAAC
CAATAACGGCAGCATGCAGCCTATTGCTCAACTGTGAGGACGTTTTTGGAAATTCGGCAG
CTCTCATCAATGAACGGTCGATGTCAACTTCTTGTGAGCTGCCAAAGCACGGTTCAGTAA
CTGTATAGTGGATTTGATTGCATCTAGTTATTAGTCTTCTTTTCAGATTGTTAGTAAGAC
AGCACTAGGGACTCATAGAGGGACATTGGATGACACAATGGTGCTTAACAGTACCGGTCC
TTGAGGTGTAACTGTTTTGAAGTTCCTTCTAAATTTGCATTGCTGCCCACTTGGTTTACA
GGGGTAGGATTCCTTCATTTAAAAATGCTTTCACCATAACTGATGTTTGCAAGAAATTGA
AACTTAGTAAAAGTAAGCTGCAAACAAGACATAAGATAAAGACACAAAGAACCTTCAAAT
TAAGAATCTTGTCTGGGCATTCACCCCGATAAGTTCCCGGAAGCAACTGGTGCAGATCAG
CATACTGCTTCGATATAGGAAGGGAACTAAAAGCATGCGACACGAAGCCCTCTATCAATA
GGTCCCATCGCCTTGAAACCAAACCCAGCAAGCATATCTCCTGTAAAGACGATGCATATA
TACTGATGTTATAATGCAGACAATGAGTATACAGTAGTGCAGATGATTAAAGATAAGCCA
AGAATAGGTACCATGACTTCAACGAGACCACTCTGACAAGAATCTACAGAAACTTTTGGT
TCAAACACCTTCATCCACTGCTCCTTGGGAGCACTAAAGATAAAACTAGATCCGGACACA
ATCCGAACAGTGCGTTCATCAAGCAAGTATGACAAACACTTCCCTCTCCACTGTTTCCAC
AGAAGAAACTTCTCGATTGTTTGTGATTTTCTGAATTGTAAAGTCTAGGGTGAGTTCAAA
CTGAAGTATGCATGCTACCATGAAAAACAGAGGATAGAATACAGAAGCCGGTTGTTTAAA
GGCTTATGTACCTAGGGATCACTGGGCTGCCTGGATCACTGAAGATGTTCTTCTTCACGC
TGTCCCGAAGTGTGCGCAGCCCTCTCTCAGCCAGAGAAATGCACGATGCTGAATCCAGTC
GTTCCAGAAGCTCGTTAACCAGAATCCGTGAATGACCCATAAACAAGGACTCTGCATACA
GTCTATCAGAACTAGTGGTGGGAACTCCGGCTTCACCGCCACTCTTGGTCCGCGTCAAAC
CAGACAGATCCATATTCCGGATCGACTTCACATACTCTTGGCACGCGTCGCGCCCACCGC
CAGCGCCAATGCCTTCGATGTCCATCTCCACGACCGCCTCAAGAACAGCACTGATGTTCT
CCACGCTCGTCGTCTCGGCTTTCAGAAAATGCTTTACGACCAGCTCGGTGGCCGTCGAAA
GCGTCTCCGATCGCATGTCAGCAAGGCCCTGCACGGCACGAAGCACAACATCAGCACCCA
CATAATCATAACAAACATTTCATACATGAATCGGTTCATCGAAATCACCTTGGGGAAACC
CGGGCTTGAGGCGAGCTCCGCGAGCGCCGCGTCGAACTCTCTCGCGGAATCCTCGTACTG
CCCGGAGTCACGCAGGCTCCTGAATACCTGAACACGACAATGCAGGAGGAACAAATTATA
CAGCATTCAGCACACAAATCCCCGCGGGTGGCCAGCATGCGGCAATCTGAAGCGCGACAC
GAGCCAGGGAGCGAGGGAGGGAGGGAGGGAG