Map Locations of contig_49984 (10696 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_49984

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_65269 1 485 bp MLOC_65269.1 Available Available None
MLOC_65268 3 1739 bp AK370871 Available Available None





CDS Structure of MLOC_65269






CDS Structure of MLOC_65268






Contig Sequence (10696 bp)

>contig_49984 10696 assembly3_WGSMorex_rbca.fasta
CTTCTTCTATTTTTAGTGTGAACTCACTTCTATTCTATATCAAGATAGGGGCTTCAGTAC
TTGGCTGACCGCCCGGTGGAAGACCTGGTTCTACCACACAAGGGCAGCTTTCGTAGTCCA
GGATTATTTTCCTCATATGTAATTTCACCTCAATGTGGAAATGTAGCGCGGTCTGGATAA
AAGCGCTACTGCTATTTAGTAGTAGCTCAAGTGAATAAAGCGCACTACTGCTTCAGACTT
AGCAGTAGCGCAGGGGAATAAAAGGCTCTGCCAGTATGGTTACCCACCCGAATATGCATA
GTAGCATAACATATCATGGAAGTGCGTTACTACTAACTCTATAGCAGTACATCAATATTT
GGGATGACGCTTGGATTCCAAATTGTGCAAATAGGAAAATTGTAACGCCAAAGGGAAGAC
TTTTGTTATCTAAAGTGGTTGATTTGATTGATCCTGTTATGACTAACTTGGATGAAGATA
TTATTAGACAAACAATGCGGCCCATTGATGCTCAACGGATTCTTTCAGTTACACTACCAC
AACATGACATGCCAGATTTCATTGCTTGGAGTTATTCGAAGAATGGTATGTTTTCGGTAC
GGTCTGCTTACTCGGTGGAGTGGGACCATCAGTATGGAAGTAAATTGAGACATTCTAATG
GGATGGGTCGATCTATGGCTAACCCTATCTGGAGGAAGTTATGGAGGTTATCTTGTCTGG
CAAAGGTTAAAAAATTGATCTTGCGTACCCTACATGGCACCCTTCCTTGTCGTGCAACAC
TTGCAAATTGATATATGAAAATTTCACCAATTTGACCCACTTGCTCTCAGGGTCTTGAAG
ATACTAAGGATTTGCTTTTTCTGTGTACTAAAGCAAAGGAAGTTTGGAAAAGATTAGGGA
TGGATGATATTATCGCAAAAGCTTATGAGGTTTATGAGGTTGATCGTGCTGGAGAGGCGG
TGTTGGAGTACTTAATTCTTCTACCAGAACAAGAATTGAGGATCATGGGACGCCACGATG
TGCGTGAAATGATTGCTATCTCAGCATGGTATCTATGGTGGTAAGACGAAAATTGGTGCA
TAAGGAGAAAAATCAGAATGCTCATCTGATCTCTATGGAAATTTTAGCCCTAACAACAAA
CTTTGTCAATGCATCATCCCTAGCGGCCTCAGTGAGAAGGGAGGGATGGTCTTGTCCCCC
CAGGGGATTTGTGAAACTTAATGCGGCAGAGGCTGGGACGGCCGGGGAGGCCGGGAGGGG
GAGCAGTGGGCGGCGGGCGACGGAGTGGTTGCGCCTGAGCGGCTGCGCGTGCGGACAATG
TGGTGCAAGCAGGGGGCCTCACTCGCTCGCTCTAGGTCAGGGAGGCCGGCAGGCCGACTT
GGGCGCTAGTTGTGCGTTGGGTCAAGCCCCGGGGCCATTCAAAATTATACCTATAATAGC
AATAAAAAAGTCATGCCCCGGTCCTGGCTCTGAGGGCCTAGGGTCCAGATCCGCCCCTGT
GTCTCGTGTCCCCGAAGGCGCAATGTTCGTCACCTCCTAGTGCAACATATGTGTACATGT
ATCGTCAGTTTGGAACAAACAAGCTTTCGAAAGGGTTTTTTATAATGTAATGATCTGTTG
CTGAATAAATAAGTATTTATGTCGTCCCTGAAAGTTGGCACTAAAAATTTCCTCTAGTCC
AGCCAAAGTGTTTATTTTTATTTTATTTGCGGGCGCCGAAGTTTGTTTTGATCTAACCGA
AATTAATGTCCAGTGTAATTGTATTTTTCTTTTATTTCTGTCGGATCGAGGATTGCTTGA
GCTTTTTTTGAATTTTGATGTGGTTAGCAAAATAAAAATCCAAAAAAACTCTCGGACATG
GTTTGAAGAAGAAAAAGGTTATTGGCTCTACAAAGCTTTCGGGGTGACCTTTCAGCCTCT
CCTGCATGCCTTGGGCCTAGCAGCAGAAAAATATTAAGCCAAAATTCATCCTTCCATTTT
TAAATATAAGTCTTTTCGAAATTTCACTACGGACTACATATTGAAAACCATGATAGACCA
TGGTACACCAGTACATATTGACACTGGAGATGCCTCTTTTGAAGAGATGTGCTCTGACAT
AGATCATTTTGATGTTGACATTGAGGATGAACAAATTGAGAAAACTGAGAGGTATTTTCT
CACGAGGGAAGATGCATAGAAATTGCTCACCGGGACTTAGCTATGTGAAGCATTATGTTT
CTGTGGGTGTATTAAAAAAAGAGGGAAAAAAAGAAAAGATTCTTGTTATACTCTTGGTGA
ATTCTATATTAACATTCTATTAGGAAAATTAATATAAAAATGAAAGGTGTTTCCTGGAAT
CCAAGGGGATTGGAGAAAGACCCCAAATAGATATGTTAGGGAAATGATCATGCATCACAA
ATTAGACTTTGTGGGGATTCTGGAAACTACTAAAAAAACATTTCACTAAGAATGAGCTAC
ATAATGTGTGTAGTGGAAGGAATTTTTATTGACACTGGAACCCACCAAGAGGATTATCGG
GGGGATAGTGGTGGGTGTTAATAAAGATTACATTAATGTGATGCACATTGAACATGGGGA
GTACATCCTTAGGATTTTGGTTTTTGATGGAAAAGCTAAGTTTCATTGAAACTTGGTAGC
TGTATATGGTGATGCTGAGATTGAAAAGAAAGCTGGTTTCTTAGGTGAGCTAGCTAGGCT
ATGCCATGATAATCCTATACCCTCTCTGGTGGGGGAGGCTTTAATATAATTAGAAAAGAT
ACAGGTAAAAATAAGCCCATAAACAATAAAATTGGAGCTTTGTATTTAATGTTATAATTG
AACATGTTGGGCTGACAGAATTTCCTTTGAGTGGGAGGAATTTTACCTATGCAAACAAGT
TACCTGATCCTACATATGAAAAGCTGGACAGAGTTCTTTTCTGTCCTGCTTGGAAGGAGA
AATACCCTTAAACAATTTTACAATCCTTTGCTAGAGTGTGCAGCTATCGTCAGTTTGGAA
TAAACAAGCTTTCGAAAGGGGTTTTTCATAATATAATACTCTGTTCCTGAATAAACAAGC
ATTTATGTCGTCCCTGAAAGTTGGAACTTTTTTTCAGTCAAGCTAAAAAATTCCTCTAGT
GCAGCCGAGGTTTTTTTTTTTGCAGGGGCTGAAGTTTGTTTTGATCTAACCGAAATTAAT
GTCCAGTGTAATTGTATCTTGTTTTCAATAATATATTCCCATCGGATCAAGGATTGATTG
TCTCCAACATTACAGTTTTATTTTGCTTAATAAATTGACATGCAGCTCTCATACATGGTT
TGAAGAAGAAAAAAAGTTATTGGCTCTAGAAAGCTTTCAGGGTCACCTTTCAGCCTCTCC
TGCATGCCTTGGGCCTAGCAGCAGCCCAAAGATTAAGCCAAAATTCATCCCTTCGTTTTT
AAATATAAACCTTTTTAGAAATTTGACAACGAACTACTTACGGAACAAAATGAGTCGATC
TAGACTCTAAAGTATATCGATATATTTTCCGTTAAAAAAGGTATATCGATATATATCCGT
ATGTAGTCCGTAGTGGAATATGTAGAAAAACTTATATTTAGGAACGGACAAAGTACAATA
CAAGTGCCAAACATAGCATTTTCTGGGTTCCACGTATGCCATTCCAGAGCATTTTCATGG
AGCACAGATTTCAGTTGAATCAGAAATGTCACACATGCATGTTTTCACGCAACCAAAGAA
ACCCTCCATGAATATAATCTATCCTGTGGCAAAAACTGAATACATGAAAAGTATGGAGTA
CTTCATAAACGACCCCTCCCTACAGAACCAGCCTCTTTTCGCAACTGTGGTGACAGTTGC
ACAATGACATTGCGTCTTGCGGATGGACAGCAGCAGAATCCCACTTGGGATTTCTTCTCC
TACGAGCAAAAATAGACCTGCCTATTCCGACACCAAAGCCTCCAGCTTCTTGCGGAACTT
CGGGATCACGTCGGCTTTGACGCACATCACCAGGCCCATCTCCTTGTAGTTCTTCAGCTG
CAAGGGTGTCCAAAAGATTATATTTAGCAACATGTGTTAATTTCCGCAGGCAAATAGGTG
TAATCCGAATCGGATTTGGATAGGGTGGTGGAAATGGGAATGCTGAGATCGTTTGCTACA
AGAAAAATATGCTCAAGAGTTCAAGACAGAACAAAAGAGCAACAAAAATTCAGTTCCTAC
TACTTGGCATGCTTCTCTAGGACTAATGGTATTTCCTTGGAACATGATAAGAGGTTATGT
TTTCCAAAACTAAACATAAGACACTAGCAAAGAAACATATGCACCACCAACACAAGTAAA
ACCTTGCACATGATAAATAAGTATGTACATATCGAAACATAATATAAAGGATGGAAAGAT
TAAAGAGAACTGACCTCTTGCTGTGCCGACTGTTCGGCGCGAATTGGGAAAGTAAATGAC
CACGTGCTAAGCTGAGAAAAAAAGAAAGAGGTGTCAGCACCTGTCACAGAAATACAAAAT
CAACTAATACCTCAGCAGAATGTTTTGATACCTCACGTAATATTTCGTCCTCCAACTTCG
GATAGATAACAGGTTCATCCTCATCTTTATTGTTCTTTGATTTCTGCTTTGGTGGAGTTT
TTCTCTGAACAAAGTGACAGAGACAAAGTTTGTTGGTATGAACGAATAGATTACAAAAAC
AATATAGGCTCTTCAATATCAAGGGTACTGTACTGATTAACTAAACATACCGCTTTGTAC
ATTCAAGCAAAGCAGGAACATGATGCATATTGAGCTCACCTCCAAGATTCTGACAAGGAA
CAGGTACTGCTTGAACCGGAAGGAGTCCTGGAGTTCTTGTGTTGGCTTCAGACATGCAGG
CACAGTTGCAAATTCATTAAACGCATAAAAATGGACAGAACTGAATGTGCTTGGCAATCT
GATAACCCACCTCATCTTCTGTCGCCCAGGAAACCTCGTCAAAGAGTGAATCATACATCT
TAGGCACCATTTCATAGGGGAAATTCACAAATCGCCGGCACACCAGCAGGCCGACGGTAG
ATGCCTTCTCTTCCAGCAGCGACTTGAGCTTCTTCTTGGTGTCCTTGTCGCCGCAAACAG
CAAGCAGATATTCCTTCAGATCCTTGATGCAACGGCTCTCCTGCAAGGCAGCAGCAAGGT
GTTCAGCCTGAAATCCACCTGAGCATCAACTAATCAGACGACACAAGCGAGTCAATTGTG
CATCACACACACCCCATATCTTCCCAAATTGAGCACGGTAATGAGGCCGAACAGGTCCTC
ATCATCGTCGTCGCCCTCGTCGCTCTTGTCACCCCCATTTGCTTCCCCATCCTCATCCTC
GGCCATCTTGACGACGGTGCCGACGGTGGTCTGCTCCAGGACGAGGTCGACGAAGCCGGT
GAGGTCCCAGGGCTTGGAGTCGAGGTAGGTCTTGAGCAGCAGCCTGACGCCGTGGAAGTC
GGTGGGCTTGGGGTCGAAGAAGGCGAAGTCGGCCTGCACCGTCTCCATCTGCAACAAGCA
CCGATACGAGGAGCAAATCATCAAAACTTTGCCGGTGAAACAGTAAATCAACAAGAGGAG
GGGAGAGGTAGGCACCTCCTGCGACGCGTCGTCGTCGTCGTCGCTGCTCGAGCACTCAAG
AGAGCTGTCGCTGTCGCTGTCGCTGTCGCCGTCGCCGTCGCTGTCCGCCTCGGCGTCGCT
GCTGGGGCGCTCCTCCTCCTCGTCGCTGGAGGGCTCGGCCTGCTTCGCGCGCTTGGACGC
CGGTGGCCGCATGCCGGCCGTCTCTGGCGAGCAGACGAGGCGTGAGAGGAGGGTTCGGTA
GGAAAAGTTGGGGCTTTAGGAGCTTACCTTGGTGGGGTTTGGCGGCGGGGGCGTTGGTGA
GAGGCAGCCTGGAGAAGCCGGAGGCGGGGGAGAAGAGGAGGGATCGGGCGAAGGTTGAGA
AGCCGGCGAAGGGGGCTGGGGCTGGGCGCTTCCGGCCGGCGGGCATGTCTCGTCGCGGGC
GGTGAGGGTGGCGGCGGCGACCGGCGGCGCTAAGGGGAAAGGGGGAGAAATAATCGCACT
CGGCTCCGCTGCCCTCGCTTCGCTTTCTTTGGAGCAGGCTGGGCCTTGTGATTCGTGGGC
CGACAATAGATGTGCAACCAGGCCTGGTAGTTGTGTCTTCTTCTCTTGTGAATGGTTCCG
TGTCCTCTCTTTTTTATTTTTATTTTTCAGGTAGGCACCGTGTGATCTTTTTTTCTTATA
GGTAGACACTAAAGTGTAGTGAAAAATGCCATGTTTAAAATGTTCATGTTTTCAGTTTTT
CTCAAAAATAATTTTTTGGGAATTTCAAAAAATGTTCATGCTTTTGAATTTGTTTCGTAA
TTTCGAAAAGGTTCCCATTAATAATTTTAATATCTAAATTAAAAATGTTCGCTTTTGTAA
GAAAATATTCTGGATTTTCAAAAATTGTTTATTTAAAAAATGCATATTAAAAAAAAGATA
TTTTGAAGTTTGTTTGTGTTGTTCAATGAATTGTGTGATTTTCTAACATTACTCGTTTCA
AAAAATTATTCATAGTTTCAAAAAATGCCCTGAATCTCCATCGTACTTAGGTCTTAAACT
GTGGCTCTTAATATTAATGACATACACTTCCCAAGTCCTGAATTCGATTCCATCTGCGGT
CGTTCTTTTTTATTTTTCTAGAAATTAGATCGCTGCTAGTACAGTTGCCATTGCTACAAT
GGCCGCCTCCATGGGCCGGCAGAGTTGAGTTTAGCGAGGGGTTGTACCGAAGTGGGACTC
TGCACCTAAATTTAGATAACTTGACATCAGAACTGACACACTAAAGGGACTATTAGTCAG
CAGTATCCAATTCAAGCAAAACAAATTGCTTTAACAATCTCCAGCCAGCGATGTTCTCTA
GAAAACGCAACACCGAACAATTCCACTTTTTTTTTGGCGCAAAGCTGACTGAATACTACT
CCCTCTGTAAAGAAATATATGTCTTATATGTCTTATTATATTCCTTTACTGAGGGAGTGC
AATGCTCATCCAACTATCTTCATTGGAGAAACCAACACATCGCACAGCTTGTAGGTTGTA
GCTACTTATTTTGGTATAATTTGGAACACTCTTTGTATGGTACTTCTTCCGTTCACAAAT
ACGGTATAAGACATTCTAACTTTTCTCTAAATCGGATGTATATAGAAATATGTTAGTGTG
TTTTTTCACTCGTTTCAGTTTGTATATAGTCCATATAAATAAAAATATATAAAGCATCTT
AGGTATTTGTGAACGGAGGGAGTATAAGATGTTATGATTTTGTTCTGAATTGGAGTGTGT
AGACACGCTTTGACAGTAAACACCAAGAGTAACATTTTGACAGTAAACAATACCTGGTGC
TTCTACCGAAGGAAGGGTCCGGACTTCTGGTATCGGGTTTTATGACCGGCGTGACCGGCG
GCAACAGCGACAAGGTTCCTCGACCTCAAGCATGTCAACCAGCACAGGCACGGCGGTGAC
TGTACGGCTCCCTTGCACAGACGGAGAGCAGACATGTGCCCTGCCCAATTCGACTAAAAA
ACCTTGAGACATAGTGTTGAAAGGGAATAGAGGGATGGGTGGAATAGTTGTTGTATTGGT
TAGGACTCATGTGCATATATATAGGAGTAATCATCTTGGAGTACAAGTCAAGGCAGGAAC
AAATCCTAGTCTATCTATGTTTCCTAAACAATTATGTTACTCAACATCCCCCCGCAGTCA
CAACGGTAGCGACGTAGGCGGTGAGGCTGGAGAAGAATCCGCAGGTAAGCCGACGGTCAT
CCCCCTCACAGTCGTAACGGCCCACGGCCCATGCATCGTGGAAGTTGTGCCTGGAGTGGG
AACCGACGAGGTTTCTCAAGCAAGGCGGTAGCCCTTTGTGCCAATATCGAGGTAACCGAG
AGTGTAGGATGGTGTAGACGTGGTCGAGGTAGCCGTGCGAAGGACACCGTGGTCGATGTC
GAGTCGGGGTAGCCGTTGTCAACGCATTCTCCGTAAAGCCGCATGCGCAAGGAGGCGCCG
AGTCAATCATGGGCGCAGTGGTGTCGAAGTAGTGATGTGGCGGGAAGGAGACGTAGTTGA
CGACGCGTCGCGCCGGGTTTGTCAAGCCCGGGGACACTTCGTGGACGAAGGCACGCATCG
ATGTTACCAACACCGCACATGCGTAGACGGACGAAGACGATTGTGACGATGCGTCGCTCC
AAGTTTGTCAGGCCCGAGAACACACCGGGGACGAAGGCATGAGGCGGTGTTGCCAGCATC
GGGCATGCGTAGACGGAGACTTGCACATAACTTATACGCCATGTCGAGGAGGCTAGCAGA
GAAGGACTCAATGACGGTTGCGGAGCAAATCGGCGAAGGCCGATGTAGCCTGTGGTGGTC
GGAGTAGACGAAGTGGTCGGGGAAGACGACGCTGACGCTGACGATGAGCTGGTGCTGGAC
GAAGATGAAGGAGATGGACGGACGGCATGGCTCGGGTGAGCGAGCTGCAGCAGCGTCAAC
GGAGAGCGACGGCAGTGGCCTCATGGCGGCGGCGACTGGTTAGGAGTGCAGCGGCGATAC
TTGACGTAGGCGAGGAAGAGTCCGATAATATGATGAAGACCGGCACGGACGATGGCATTT
CCGTGTCGAAGGACGGCGCGAGGCGTATCACAGGAAGTCGACGCGCGGGGGACAGCGGAG
TGGACCACGCGCCGTGGCGCAATGACGCGACCCACTTGCATCCCACCTTCAATTAACCCA
GCCCACCTCGCCACCCGCCGCTGACAGACGACAGATCTGCCTAGCTCCACCGCCTCCCTC
CAGGCTCCAAGCTCCAGGGGTGATGGCGGCCCCCTTTCCGTTGCTCCTGCTCGTCCTACT
CCTCGTTCTCGTGGTGGCCGCGCCGTCCCCGCTCCTCCGCCCCGACGCCCACTCAGACAA
CCACAACCACGACGGATCCGCTCCCGGTTCCGGCGAGGACAACGACAACGGATCCGCTGC
CACTCCATCCCCCGCCCCTGCCGGTGCCGCCGACAAGGATTACAACAAGAAGAAGAAGCC
GGCGATGGAGCTGAAGGCCGGATCAAGTGGCAGCGCGGAGGACGTGGCCAAGACCAAGAG
GTGCGACGGGACCAAGGCGGCGGGAGGGCCCTTCTACCGTTACCATCTAGTCCGTAGATG
GGCCCTTTTGTCGCCGTTTTCGAAAAATAAAACGCTTTGCTGCTGTTCCCGGCCGCCATG
CATCTCAAAAAAGAAAACGCCATGCATGCATGCATCCGTGTAGATGCTTTGCTGCTGTTC
CCGGCCGCCATGTATCTCAAAAAATAAAAAGCCATGCATGCATGCATGCATCCGTGTAGA
TGCTTTCCTACTTCCGGTGATATATATATGATGTTACAATAATGGTAAACAAGCCTAATT
AAGCTCATCGATCCTTTCTTGGAAGGGAATTCATGTGCTAGCTGCTTCCATTTTTCTTCC
TTTTACCACTACAAGAAACAAACAGGTGTACCGCGCCCCATGTTCCTAGCTAGAGGATAG
ACGGTAATTAAGAGGTTCATTGTATTGTATTGTATTGTAGCTAAAAAAATTAAAGCTCAT
CCTTCTTGTCAACATTTGGCAATTTTGGCTAGTGTTTGATCGATTACGACAGTTGCCAGA
TATTAGAGTCCAACAAATCAGCTGCAATCCTTTGCACGACCAGGAGACCCATCTGGTTTC
AATTTCGACGCACCTGACGGAGGCCGGCGATGCGACAGCCGCAGCTTGGAGAGAAGATAT
GGATGCGCACAAACATGCATGCATACCAAGCAAACACAGGACAGGTCAAAATCACTTGCG
ATTAATATCCGATCCTGTCACGCACAACACATGCATACCAAGCAAACACAGGACAGCAAA
CGCACGCAACAAACAGATCAGGAGAACAGGCACTGTTATGTTAACAAATACGCACGGCAT
GCACAGGATTAACAAAAAATAAATTAACGACTCAAGATTTGTCATATATATATACTTAAC
ATGCATCAACATAACAAGGAAATTAGTTCCACTCTCCCAGCGTGCCATGCCATGATTTAG
AACCGGGGATCTGTTGGAGTATTGTATGCCCCAGGCAGGCGCGTAAACTCCGGCCACACC
GCCAGCAATGCCTGCTGGTCGGCGCCCGGTCCGATAGGGAATACAAAGCAAATAATAACA
GACACTCCTTGCTCAGTCCAGCTTCCACGGCGTGGACGGGTGAGAAATGGGCAGGTCGAC
GACGGCGAGCATGGGGTTTCTGACCGTGTGCTCGCTTGAAGACCATTCGACGATGCATAA
GTACACAGCTCCTTGCCGGTGCTCCTCACGGCCGGAGATCTGGTATGAGGCCTCCTGCCC
TGTGTACGTAGTTGAACATGAGCGAGCTTCGGTTGACGGCCACGCGCACCTCCGAAGGCA
TGACCACCTTGATTGTGTATGTCTCCGGCTCCAAGAACCGGCTAACCCAGATTTTACAAA
TGTTGCATTATTTCCCGAAACCATATGAAAATAGATTTATGTGACGACCTGAGACTTCAT
ATATCATCATCAGTTTCATACATATATATCATCAACAAAGTACAGTACAAGGCTACAACA
GTACCAACCACAAAAGGACGTGCCAGCTACAACAATACAAGCAAAATACACCGGACACTA
GTGGGGACAGGGCCTA