morexGenes - Barley RNA-seq Database

Contig contig_49981
Source Contig contig_49981
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_49981 (9801 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_49981

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_65266	1	860 bp	MLOC_65266.1	Available	Available	None
MLOC_65265	1	292 bp	None	Available	Available	None
MLOC_65264	4	1656 bp	MLOC_65264.2	Available	Available	LOC_Os02g50100.1, FRAME:+3, EVALUE:0.0, 13102.m05690 protein SET domain-containing protein, putative, expressed
CDS Structure of MLOC_65266

CDS Structure of MLOC_65265

CDS Structure of MLOC_65264

Contig Sequence (9801 bp)

>contig_49981 9801 assembly3_WGSMorex_rbca.fasta
ACGTACCATCAGCTTCTTTTTTTGCTACGATCACGTAGATATTTTTTTTTGCTACAAATT
TTGCTTTTGTTGTAACCGTTGAAAAAATTGCTGCACCGCATCGAAATTTTGCTGCATAGG
GAAAAAAATGTTGAATACGGATCCAACGGTGCAGACGCGTAGGGTTGGTGAATCGTGCGG
TCCGCGCGCGGCCGGCCGAAAGTTTGAACCGGGGCGCCGGCGCAGATCGCTCCCCAATCT
AAAATGAATTACGCGCACGTAAAATACAAATGCTTGTCCATTTTCATGGACGGGTTGGGC
CTCTTTGATCCGGACATGCGCTGGACAGTTTAGGTCGACGCCCTTACCTTTTCAGCCGTC
TCCTCATCTGAAAAAACTGTCTCCTCCAGCCTCGTGCGCGCACGCCTCCACCTCCGCCGC
CCATGGCCGCCGCCGCCGCGGGCGTGACGCCAGCGACGGCGCGGAAGGTCCTCGCGTCCA
CGACCTCCGCCCTCCTCTCCTCTTCACCCGCACTCCGCCGTCGCAGCTTGTCCTGCTCCG
CCGCATCAGCAGCGACCGCCCCACGCATCGCGCAGCAGCCGCCGGACCTGCTCCGGTGGG
TGCAGCGCGAGGGAGGTTTCGTGCACCCGGCTCTCCGAGTGTCTGATCACCCCGAGTATG
GCCTCGGGGTGTCCGCCACGGCGGCCGACGGCGTCATCCCTCCCGGAGCCGTCCTCATTG
ATCTCCCTGGGCGCATCCCGCTACGACTCCGCCGCCCAGCCGATGCTGCGGACGCAGTAC
TGATGCAGCTCGCCGACCAAGTACCCGGTATTGGCCTATCTGGTTATGTTCCGCTAGTCC
GTTATGTTCTAGGAATAATGTGGTAGCTTAATCGTGGTTGTAATTGGGAATGCATCGAAC
TAAAGATGCATTTTGGCAATACATTCAGAGCATAACTGGTAACAATGCGGGTTTTTTATT
TTTGGCATCAGGGCGGCTCATCGGAAATCTTCTCTCGTAGCAGTAGGATTATTAACTTCT
GAAAATAGGCATAGCATCGATGATGAATGCAATTTCATGGGCTAAATTATGCTCTCAACT
GTTGCTGTTTTCTGTTGGAAGCTTCCAGTTGTGAAACCACAGTATGAAAACTAAGGATTC
GTGAAACCTATTAGTCTCCAGCTTACGACTGTAGTTGATATAAGCTGAGACTGAGAAGAG
TTCAGTGCTTAGTACACTAATTAGTATGATGTTCTAACTTAATTGACCTCAGGTTCAGTC
TATTGGTCTTCTAGCTAAAAATGTAAAAGGCAGAATTCTAAATACCATATCGCTTACATG
CATCTGTCTTTATTTTCTAAGTTCTTCCCACTATCTTTCCATGTTGAATTGTTTAAGCTT
GGACTCATCTCTCATGTTGTTAACATGTTCTATAACCCATCCTTCTATGTAACTGATATT
GCCTCGTGGTCGAATAGCTGCATGATGGAAAATTTATGTACGCATCTTCCTATCTCTGTT
TAGTATATGAGGGAGATTTTTATTCTGTATTTTCTTTTCAGAACATAATTCCATTCTGCA
AAACTAGGCAAACTATCTTTTTCTAAGTAGTAAATCGAATCTTGTGGGAAGCATGTGACA
GAGGAACTGTGGGCAATGAGACTGGGCTTGAGGTTGCTTCAAGAGAGGACAAAATTCGAT
TCGTTTTGGTGGCCATATATCGCGAACCTGCCAGAGACCTTTACCGTACCAATCTTCTTT
CCAGGGGAAGACATAAAGAACTTGCAATATGCTCCTCTCCTCCACCAGGTTGTGCAAAAC
TATAGCGACCGTTAGTGGATACTTATCGTATTATCCTGTATGTTTTCTCACTGATGCTAT
TTCAGATAAATAAAAGATGTCGTTTCCTTCTCGAGTTTGAGAAAGAGGTAAAACAGAAGC
TTGGCACTGTGCCCTCAGGAGATCATCCTTTTTGTGGACAAGATGTACACTCGTCCTCCC
TTGGATGGGCTATGTCCGCAGCGTCTTCACGAGCATTCCGTCTGCATGGTGAAATCCCAA
TGTTGTTGCCCCTTGTTGATATGTGCAACCATAGTTTTAGCCCGAATGCTAGGATTGTCC
AGGATGGAGATGTCGAGAGCCCTGATATGTCAGTTAAGGCAAGTATACTCCAACCTTACA
TGTGCAAATTGTCATTAGTGCGTAAAAAAGGCTGATTTTCCTGTTCTCTAATCAGTTACC
GTGTTCTTTGTTTGTGCATTTCCTTAACAAATGTGGATGCTATAACTAGATACAGTTATT
GCCTGTAAAAACACATCAACATAACACTCTTAGAACTCAAATTTTGTTTGTGTACTCTTG
ACTGGCATGCTAGCCATTCATGAAGCATGATAGTCGTGTGCTAATATCTTTTTTAGTAGC
ATTCTTTGCATACTGTTTCTAATGTGGTATACGGTTGTTAAGCATGTCCTTGCTCTTTAA
GCTAGTAATGTAGGAGTAAGTGTTTTTATCTTTCTGCAAGAACAGTAGTGAAAGTATCTG
GCTGTACATTAGTCACCGTTGAATTCATTTTTCAGTTATTAACTTGCATGTGCATTGGTA
GCAAATAGTAATTACTGCAACCATAAAACTGTTTCCTAGAGATAATTAGTTTCTTGGTTA
GTAATATATTTTGCCCAAAGTGGCAAATATATAACCCACTGATTATTCAATGCATATACA
GTAGTTTTTTACTGTACGATGTGGTGATGCATTTGCTGGCAGAAGCAGAGTGTTTTTTGT
CTAATGTTTTGTATGTCGTGCTGTACACAGGTTATTGCTGAGACGCAGATTGATCAAAAC
GCTGCTGTTACACTGAACTATGGTTGCTACCCCAATGATTTTTATCTTCTTGATTATGGA
TTTGTAGTAACATCGAACCCATACGATCAAGTGGAACTGAGCTATGATGGGAATCTTCTC
GATGCTGCTAGCATGGCAGCAGGGGTTTCTAATCCCAACTTCTCAACACCAGCCAAGTGG
CAACAGGAAATCTTGTCACAGCTAAATCTACACGGAGAGGGTGCCATTCTAAAGGTTTTG
CCCACATTCTTCCACTATAATTTGTCTGTTTTATTTTGTGATTTGATCGGATCCAAATTC
AAGTCTATTTTGTGTGGTATTCCTGTATGAGTCTGAACCTGATATATCTTGCGGTGATCC
TGACTGGTTATCGACTTTCAGGTCAGCTTAGGAGGTCCGGACATAGTAGATGGGCGCTTA
TTAGCTGCGCTGCGAGTTCTTCTTGCAGCTGACCCAGAGGCTGTGGGTAAGCACGATCTG
AAAACTTTGATGTCACTTAGTGCGAAAGCTCCTCTAGGCCCTACTGTCGAAGCCTCTGCG
TTCCGAACTGTTCTCGCGCTTTGCGCCATTGCCCTCCAACACTTCCACACCAAGATAATG
GATGACCAGGCCATCCTAAAGGGAGAACCCCCTCTTACTACTGAACTGGCCGTCCAGTTT
AGATTGCAGAAGAAGCTGATGCTCGTCGACATAATGCAGAATCTTAGTCGGAGAATCAAG
ACGCTGTCTCCGGAGAAATCTACTGCCTAGGATGTTAACAATTTGTGATAACTCTCTTTT
GGACAATCAACTACTATCTTTCCTGGATATGTAACAAATAAATCCCCAATTTTGATCTTT
TACCATTTCCCCTATTGTCTGTGCTAGAATTGAACTTTTTTTCCAACCGGGCTCACACCC
ATTTCCATTAATCGCTTAACGGAAATACATCGTACGAGTTTTTGCGAACCAAAAGCAAGT
AAAAATCTAGGAGACAGAAAAGGGGGGAGCGAGTTGGAGCATCGGCAGGAAACCCACTGC
GAATGTTTCCAGAAGAAACATTCATCGTGGGACGAAAGCTCCCACCAACAGTACTCATCA
TGCAGCATAAAGGAACCACTACGAAGAGATCAATCCACTCCCTAGGACTAGGAGAGATCA
TAGTACAGTCAGCGGGCATCAAACCCCAGTGAGGATGGCTCGGAGCCAGATTTCATACTT
TATCACCATAGCCCAGCGCAGCTCTGCTCGGAGAACGATCAGCCAAAGATGCTGCCATTC
ACACCATCATCTGGACTCCTCTCTGAAGCTTCGACTTGTCACCTCCTTTCAGAAGACCTG
ACCAGTACATCAAGAAAGAACAAGCAGTGAAAACAGCTTCTAATAAACTTCTAACCACAT
GCTTCTCAAAGATAACTTTGTTACGAGTGCATCATATACTCTAGCAAATAGTAGCCAAAA
TCATCATATAAATTTTTCCACTTTCAACAGGAATATGTATAATCGGGCTCAGCATTGCCA
CAGGGACCTTGAACAACATGTTGCGCCAACAACTACCCCAAACGTCCCCCCAAACCAAAC
GAGCAAAAGTACAGCCGAAAAAGAGGTGCTCCGCCGTTTCAACATTCTGACAGAAGGAAC
ATAAAGGATTTTCGGGACAGTTTCTTTTCCGCATATTATCCCTGAAAAGAACAGCATTTT
GAAATAGCTGCCACATAAAAAATTTAATCTTCAGAAGAATATTAGCTTTCAAAACCCATT
TATAGTCAGATCCAGCAAGGTCTTTCTTCAACCAATTGTAAACCGATTTAATAGAAAATA
ACTTGTTACAATTAAGTTTCCACACCACCCTATCCACAGAATCAGATAACATCAGGTTTC
GAGCCCCATTAACAATCTCTTTCCATCGTCGAGCGAGTCTCCCAAAGAGGGTATGTCTAA
ATGGGATGAATAGTTGTTACCAACAAAGGTTGTAAGGCTGCATTCTTGATCATCACAAAT
GCATTCTTGATCATCACAAATGTCAAATAACATAGAACAACTATCTTTTAAAGGCCTGTC
ATCGAACCAGGCCTCATGCTACCAGCCATATACACATCTTTAACTTTCATGATAGCTTTC
CAGCAGGGGGAGTCATTAAACCGAGCTTGAACATTAGCAAGTGTTTTAGAATTGAACATG
AGAGGCGTTTTACACATGTGACATGTTACACCTGTCTGTTTGTATTAGATCAAGGGATAT
ATATTAAATTATCCTGAAGAGTTACTGCAACCAGTCTCTGCGTAATGAACTTCAGTGAAA
TGTAAGCTATACTTGTCATTAACCTGTAATCGGCAATCTCGTAACTGAAGAGCATTGTTG
AGCCATAGTTCAGATAAGATAAGAGTTGACATCTTGAGGCAAAATAAAGAGTTGACATAT
TCAGACCAACATCACAGAATTCTAATCTAATCTAAATCTCTATGCATAATCTCTTTTCAC
AATCGCAAGCATAATAATAAAGTAAGAAAGAACCATCCATCCAAAAATTCCTGTTTCCTA
TAAGCTGAAAAGGGGAAGAGACCGACAAAGCTCACACATGGGAGTATGGTGAAGTATTTA
CAGGACCATCATGGAGAGATGGGAACGAACGACACCCCAGCAGAAGAGGATCTATCTTCT
GCCCCCGTCCACGGACGGACAGGATCACCAAAGGAAGAAGAAGAAAAAAAGGAAGGAAGA
AAAGAAAAGGTCCTAAATACACGACGAGAAGAGAGAGCACGAGGGGACGGCCGATCGCCG
TCCCGCCCCGTCCTCTAGGAGTCGCCGCCGATGGAGATGGAGATGGCGGGGCGTCCGACC
CGGCCGAGCGGCGAGCGCGAGCGCTGCCGGCCGAGGTCGCGGAGGACGAGGCGCATCCCG
GCCAGCTGCTGCTGCTGCTGGTACGTCTCGTCCACCTTCACCTTGTCGCCCTCCTCCTCC
TTGATCTTCCTCACCTGGCTGTGCACCACCCGCGCCGCCGCCAGCCGCTGCCCTTCCTCC
TCCCAAGAATTCTCCATCGCCAGACCTCACGTGGCTTCTTCTTCTTCTGGTTTCTCTCGT
GCCTCTGGATGGATGATGAAGATGACGACGACGACGACCCGCCGATGAGATGAGATGAGA
TGAGATGGGAGATGGGAGATGTGAAATGTAGCACTGCCGGTTCAACCCAGCCCAGCCCAG
CACCATGCGTTGCATGAGACGGGGCGCATAAATAGGGGCCACACGTATGGCGGTGTGAAA
CGGGACGGGGTCACGCATCCGTGCCGTTTTTGCTGGGGCGACGAGCGCACGCAGCGTACC
GCGTGTCCCTCCCCGGTTTACCCGATCCTCACTTTCCGCCGTCGCTTTCTTGGCCGATGG
TTTTTCATCTCCTCCGCCCTCGGGTGGGTAAGGCCGAGGGAGAAGGGAAGACATATCCGT
CCATGTGTACACGTTGACGCTGTCACGTTGCGAGACATGCCGTTGTGGCGGGCGGGCGAC
GGTGCCTGCCTGCCTATCCGCAGAACGGCTCTCCACGTGCCCTGCTGCCCGCGCGTTGCT
TCGGTTCGATTTGGACGGATAAAGCTCGTCTATCCAAATCCAAATCCAACTCCAACCGGT
CTTCTGAAAATATGCCGCGCAAATCCAACTCCAACCGGCCTTCTGAAAATATGCCGCGCA
AATCCGACTGAGAGTGTGTCCGTGCCGTTTTTGTTTCTGGATCTAGTTCGTTGTGCGTGT
GGGTCTGTGGGAGCAGAGGAACAAACGGATACGCCATGTTTGCAACGGAATATTTTCCTT
TTCTTTTGGAGACGGGCATTTCCTCTCTTGGAAGTGGGACGAACACGTGAGTGCGTGACA
CGCCTATTGATTGCAGCTAGCGAAAGGACGCGTCGGGTTTTATTCTGTGGTGGCTGTTGT
ACTGTATGATCGATCGGGCGGAACGGCGGCCGCAAAGCCATGAGCGCGTGGAGCCGGTTT
GGATAGGAACGGGAAGCTAGCAGTGGCTGTCGATGGAGGCCAAGGGCGGCCGCAAAGCCC
CCGCGGACGGATCGCCCGCGAGTGACGCGTTCCTGTGGCCGGACGGCGGAACAAGGAGTA
CGTACGTACCACGGAGGGGAGGATCCTTTTTCTTTTACATCTTTTCATCAATTCAAAAAG
GCACCGTGTTGAAACATTTCATCTGTCGACTTGTTGTCGCAGTTACCATCAGACGCCTCT
AGCAAGTCGCAATTCCGCTGATAAGAAATCGAGGGGCAAAGGAAACCGAGGCTGTCGTCG
AGGATCGTCCCGTGCTCTAGAGGAGTGAGATGTGAGGAAATCGAGGGGCAAAGGAAACCG
AGGCTAGTAGCATTTTACAGTCGACTGAAATTATTTCAAAATTTCATGCGCAGAATCTCG
CGTTGAGATTCGTTTTAGGATTTAGGATAGCCTTTTGTCTTTGTCGTCCTCCGAGAAAAG
GCCTGCAGTTCTTCAGAAATTGTCACCTCCGACACGACTAAAAATGTAAGTAAACGTCGC
AAATCCCACGCCCTTCCAGTGAACGGTCGTTAGATAAGAGGGCTCCATTTTTTTTGTAAC
CGCTTTATGCGAAAAGCGAAACATTTGGAGGAGAGCAGCAAATAAGGACTACAACCATTA
AGCCTTGGCCTTCCGAGCTTGTGACACTCGCGCCACCTCCCGAACTAGACCGGTTGCTCC
CTTCAGCCATCCATGGTGCAAGCGCCGGCCTACTCCCTCTCCCTCGCGCTGCCATGTGTG
AGTGTAGCGGGCAAGATCCAGTGTCATGTTCATTATTTTCCCCCGGGCCTTGGCCTTGGC
CTGTGCCTCGACCAGCGAGTCGGCAATCGCACGGCGCCGTCGGGAAGGACTCTGTGAGAT
GCCTGGCCCCACTACTCCTACTTGATGGCCTTCGCCCTTCCGATCAGTGCTAAAACATCG
GATCTAGAGTAGGGGGTCCCAAGCTTGATGACCTGTGTTAGATAGTAACAGAAGAAGTAG
GGACACGATATTTTACAGGTTCGGACCGTCTTGATGAGGTAAAACCCTCTGTCCTCCTTC
TCATATATTGATTGTGATGGGGTACAAAGTACAACTTGATCTACCTCGAGATCCTATGAA
CTTGTTCTAAGCTATAATCATTGCGTATATATCTCTACAGACTAAAGTCCATGGCTTACA
TAGATGTCAGAGCTATCTAGGGTTTAGACATAGTCGGTTATAATTTAGGGATAAACATGC
TAATATTTGAAATACGCTTTGAGTGTACGCCACCTTCAGGAAATCTTGATCTTGATTACA
CCGACTCACCGAGGATCTGGGCCGACATAGCCTGATCACCAATCTTTGGTGGTTCCTTGG
CCCGACCCATAAGTGACGGGCCGACGTGACAAGCACCCCATCATCCAAGACACCAATAGT
AGCCCTTGAACTAGTGTTCAAGCCGAGGACATCAAGCATCTTCCTCAGAATATCTTCATA
ATTCTATGTGATCGGCTTTGTAGGCGAATTCCGTCCTCCACGCCATCCTTCGATTCTGAG
GCTATGCTCAGCTCCGAGGTTTTCTTGGCCTTATTTATTGTAACCATGCGCCTATGTAAT
TATCAAACAAGAGGGAATGTCTTTTAACAAGATTTCCTCCCTAGCACACTATCACAATCC
ATTTCCCCCTAAAATTTGGTTGTGAAAATAGAAGCATATGCATACATGATTTCCTTGCAT
ATTTTTCTTTTGGGGCCAACAAGACCAACATTGAATTCAAATCCATTGAATTCAAAAGAA
TGTCAAAAAGGACTCCATGTTGTTTTCAAAAATTGCATAAAGGACAGGAAAAGAAATCCC
TAAGATGATATTTGCCTTAAATATTTTGAATGGTCCAGGAGTTGGGAATATTTTGATTTT
GGCAATTAAGCCATAAATAAAGTTATGGAATAATAAAAAAATAGAAAAATAAATTTGAAA
CAATTCAAATAGGCCCACTAGGTTTGACACTATTTTTAGTATGCCAAAATATTTGGAGAA
ATGTTCAACCAATGAGAAGTAAAAAAAAAGTTAGATGAACAAGGAGGACTCTCCCCGGCT
CCATATATATATGAAACCAAGAGTAGTTCATACAACTTATCACAATAGTTTTGTTAGAAG
AGCAGTTCGAAAGATAAAACTAACAATGGGAAATAAAGAGTTGTAGACACAGGACATGCT
TGGCTTGTAGGTTACCAAAATCAAGACAAATAGACCGCTAACTGGTGCGTGTCCTACAAT
CTTCCGTTCAACGTAGAATAATCACATAGCCTTTCCTGCACTTCATCGGAGGAGCACCCG
TCACCTGTGGAGACTAGCACGCTGCAAGGGTTGACACTAGGCTCAGCGCTACGATCTTGC
CATCATGCCTTTGCTTGGTCGACGATTGGAAGTTGTCCACTTCTCCAGAGATCTTGAGGT
TCCTCCATTGAGCAGCCAATTTGTCCCGAGCGAGGTTCTTGGCACTCAGCCACTCAGGAT
CAGAAGTGGTTTTCGAGTGAAGGCAGTCATGTTTTTGAGAAATTCCTCTAGAGACTCCTT
GCTTTTCTCCAGGGCCAAGATTACCCAAGCCTTGAGAGTGTTGAGGATTTTCCTCGAGAC
CTGAGTAACAGACATCCATTGTGTGTTGTTAAAAAACTATAGAGTTCCTATGTTTCCACA
AACATCATAGAACGACAGAGTTGATAGTATTTAAAGTAGAGAATTTCCTATTTGAAACCC
ATCACTTGGCTACAGATTCACAGTTGGCATCAATATACATATTGAAGTAAGCACAAAGAA
AAGGCCAAATGTTTCAAGCTACAATGCACTCAAAGAAAATATGAGAGCAATTCTCATCAT
TGCTATAGTAAATACAATCTAACGGTTTGATAATAGGTCGTTTCCTCACATTGTCTCTAG
TCATTAGTTTATTATTTGATAGGAGCCAAAGGAAGACATGGATCCTGATAACCCACAAGC
GTAGGGGATCGCAACAGTCTT