Contig Data
morexGenes
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Map Locations of contig_49971 (5053 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_49971

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_65260 2 965 bp AK363116 Available Available None
MLOC_65259 3 1133 bp MLOC_65259.2 Available Available LOC_Os10g38710.1, FRAME:+2, EVALUE:3e-85, 13110.m03526 protein glutathione S-transferase, putative, expressed





CDS Structure of MLOC_65260






CDS Structure of MLOC_65259






Contig Sequence (5053 bp)

>contig_49971 5053 assembly3_WGSMorex_rbca.fasta
TGAGGAGAGAGAGGACTAATGCACATTTTAGTAGGGGTACCCCTGACTAAAAGATTTTAG
CCTCACGACTAATTTTAGCCTCTCATTAGTCAGGGGTGCTTGGAACTTTAGCCTCTTAAA
AAGACTAGTTTTAGTCAGACTAGTTTTAGTTCATTGGATCCAAACACCCTCTCAATCGTT
TTCCTTTGACGCCTCGCCTTTCCGAATTGGCATTATTACGCCGTCACCGCCGCCTGTTCC
TTCAGCCCGAGCACTTGTGCATCTACGCACATAAAGCAAGAACGCAGCTCCATTCTTCCA
CAAGCAGCTAAACTATACTACTCGTTTCCTTCAATTGTCAGGGTGATAGTATGTGTTTAC
CTTTTATCTCTCAATTCAATTTTAAGTAGCTTTGATATTTTCCTGCATAGGCAATGCTAA
GTGGAGTCTCTTATAGTCTTTCCTTTTTGTTCTTAGTTCTAGCGACAGTCATTAGATTAG
TGAGACGGAAAGAGTGCTAAGGAGAAAGGAACATGGGATAGTTTTCTTCAGTTCATCGTC
AATTCTGTTTACTAGGAGGCCTTATTTTCTTGTCACAGATCCAGACACCACTACCCAGCC
ATATTAAGGTGCTTTTATTCCTTGTGTTGGTCATTATTAAGCATTGTGTCTGCTGATGCT
TCCAGAATATCTAATCTTAAAAACACTTTGTGTCTGAATCAATCTTTTGTGGAACCATAA
TGTGTTCCTTAGTATGATAATATTGGCTTCTTTTATTGTAGAAGTAAGCTGTTTTTTGCG
GATGGTATAAGTAAGGTGTTTGTAATGTTTCTTTAGATTCTAGATACCATGAATCTAAAC
GATGTACTCGTCATTAACTTTGCATCAGAATACGGTAGTATATGTACTGGTCATTTCCTT
TTGTAGTATATTATTTCAATCTGTGTGAACTAGGGCCCTCAGTATCTTCTCGTCCCTGGG
CCCTCAATATGGGTGGACCGGGCCTGATGACTGCCATGTACACTCACGTTAGTAAGTTTT
TCGCCGGAACCATAAGTTATTTAACATATGACGCATTGTTATGCCCCTCACAAATAATTG
TTGTTTTGAGCAAGCGTTTAGCGCGTGGGAAGACATGGAAACTAAACTCCCAAATACACA
CGTACGTACATAGGTGATCAGTTTGCTTTCGCTATGCTTGGGTGGTAGATACTCAGTCAC
ACTGGTCTGAAGAGTTTCACTTGGCAGTCGCCGCCGCCACAGCAACAGCAGCACGATAAG
CCTGACGCTTCTTGGCGTACTCCATCACCACGTCCGTGTCCGGTACCACCTCCTTGGCCG
CGTCGGTCTCTGCGAACCGTTTCGCCCAGCCCGCTAAGAGCGGAGTCCTGCCGGCCTCGA
GGAACACCACGCCAAACATCTTGCGCTGCGCCTTGAGCCAGTGCAAGTGGCATCCCACCG
CGAGGTCGAGGTACCCGACGGAGTCCCCGGCGAAGAACGCCTTTCCGTTCGACTGCTTGG
CAAATGCCTCCTCAAGTCGCTCGAGCACCGCAACCGTCTCGCTAACCTTCTCCGCCCTCT
CCACCTTCGTCGTCGCTCTATTAATGCCGACATAAGCGGAGAACAGCTGCAAGGACGCAA
ACATTGTTGTGGCCGTAAGCACAAGTCGAAAGACAAGAAAGATTGGATAGAGGTACGAGA
AAACTCAAACCTTGTCGTCCGCGTAGGCGGCCCAAAAGCGGGAGGCGGCGCGGTCGTAGG
GGTCGACGGGGAGGATCGACGGCCCCATGGCGGCCCAGACTTCGTCGATGTACTGCACGA
TGGCCGACGAATCGAGTATGGTCTTGCCGTCGTGGATGAGCACGGGCACCTTCTTCTCCA
CCGGGTTGGACTTGAGGAGAAGCTCGCTCTTGTTGAAGAGGTCCTGTTCGATATACTCGT
AGCTCAGGCCCTTCATGTGCAGCGCCATGCGAACACGAACTACGAATGGGCTCACTGACA
AGCCTAGCAACTTCAGGTCTCCTTCAGCTGCCATTGCTGTCTTCTGTCTCTGTTTCTCTC
TGGTTTGGTGCGCTCAACTCAAATGAATGCGAGGACAACGTCGTTTTTGGATGTTTATAT
AGCAGGTGTTCCTGGAAGGAAATGGGGAGTTGCAGCCACGGGGACCGTACTGTGTGTCTG
TGTGCATCACGAGTGACATATCATATCATGCAATTAAATCGTAGCAATTGGTCAACACTT
TTCCACGGAATGGTGTGAGAGAAGTTGGTGATTGCTTGTCACTGATTTTCACTTTTCAGA
AGAGAAGAAAGCGAGCCGGCTCTCGGCAAAAGTATTCATCTGGAGACTGGAGCCTTAGAC
AAACCGACAGGGCCGGCAACAAGCTGCAGAGCCAAGCCATCCACGTCGTGTGCCAGATGA
ATCTCGAGGTGGACTGAAATGCTGAAGAGAAATAATGTGTCACCGTCATCTCACGGAGAA
AAGGATGACTAACTAGTGTGCTTTGACTGCCAACTGCGTCACTGGTGACGCACGTAGGAA
CTAGTAGGCACACAAACGTGAAGAACACGGTGTCTGTCAGTGTTGCACACATAGAGCAAA
GGAGAAAAACAGATTGATAACGAAACGATGGCAGCGGAAGGAGGTCTGAAGCTGCTGGGC
CTGACGGTGAGCCCGTTCGTGATCCGTGTACGCATGGCACTGCAGATGAAACGCGTGGGC
TACGAGTACATGGAGCAGGACCTGTTCACCAAGGGCGAGCTCCTCCTCAAGTCCAACCCG
GTGCACATGAAGGTCCCGGTGCTCATCCACGACGGCAAATCCATCTGCGAGTCGCTGGCC
ATCGTGCAGTACGTCGACGAGGTCTGGGCCGCCACGGGCACCTCCATCCTCCCCGCCGAC
CCCTACGACCGCGCCGCCGCTCGCTTCTGGGCCGCCTACGCCGACAGCAAGGTGTTCATG
CGTGTGTGTGTGTTGCCCCAACTGTTTCAACCGTGGAATATGAGCTTGAGCCGGGTTTCA
TCATAGTCGTGGTGTGTTTGTGTTGCAGCTCTTGCCTGCGTGGGTGGGCATCATGTGGGC
GGCGACGGAGGAGGAGAGAGCGGAGAAGGTCGGCGACACGCTCGCGGCTATCGGCCAACT
GGAGGAGGCGTTCGGAAAGTGCTCCAACGGAAAGCCCTTCTTCGCCGGCGATTCCGTCGG
CTACCTCGATCTCGTCGTCGGTTCGCAGTTGCTCTGGTTCGAGGTGCTGCGGAAGATGTT
CGGCGTCGTGGTCATTGAGGCCTGCAGGGCTCCCTTCTTGGCCGCGTGGGTGAAGCGGTT
TTGGGAGACTGATACGGCGAAGGCGGTGGTGCCGGACGTTGGCACGGCGGCGGAGTACCT
GAAGAAGCTTCAGTCTCATCGGGCTGGTGCCACGGTTGCCCAGTTGCTGTCGTGACAAAA
TCACAAAAGTGCATGTAGAAATTGTTGATCCCGGTAGCCAGTTTACAGCGTATTTTTGTT
TAGGCCAGCTCTGGTCATGAGTTGCAAGGATGCAAAGAATGAAGAGGTTTCCATCCTGAC
ACCAAAGAGGATGTCAAGTTGTTTGTAAGAAATCACAAGTATGGTCTTGTTATTTTTTTA
AAGAGGAATATATTAATATCAAGCAGGTATGGTCTTGCTATTTATCATGCATGAGAAATA
ATCTCATGTTGACTAACAAGCTTCCTTTGGTTCGACTTGACTACTGTTTTATTATCAAAT
GTTCTGCAACAGAAATATAACCATGTTAGCAAAAAAATAACAGAATCCTACATCCCTTTG
TAATAACATTTCTGCTTTGATGCATTGATGGCTGATATTATACCCCATACTCCTTCATAA
AAGGAACATGATAATCCTTTTTCAAACGAGACGTCGTCCGCCCATCCGCAACGATTGGCG
TTTTTCCGCGTTGTGTACATACAAATATGTACAGTAGCCGGACCCACGAGCGATCCGTCG
CGCCCCACCGTGTGGGGAGTGGAGAGGCAGTTTGACGAGCAGGTCACATAGGGTGCGCTC
AATTTGACCCGTTGGAGTTAACTTGATATGTGGACAGCCGCCGTCAGTGACGCGACGCGT
CACTACGTGGTCATAAACCGGTGTGGATTCCCATGTCGAACGTGGATAACAACTGCTCCC
TTGTTATGGTTTAAAAGACGTGTTATGGTTTAGAAGACGTGTATGAAAATTTTATACTCC
TTAAACCTAGGTGGTTATTGATTGGTTTAAAACCTAGGTGGTTATTGATTGACTGTAAAG
TGAACTAAAAAGTAGCATTCACACTCGTATGCATATAAAAGTAATACAACGGAGTACTAA
TTAGAAGTTACGAGTAAATACAATGCGCCTTAAACCGTTTCTATTGTGGAAATGCACGTA
AATTTAACTGTGTCTTCTAAACCGTGACAGAGGTAGTAGTATGATGTGCGAGCTCGCGGG
ACGGCTTTTGATGCCGGTGTTACGCCGACCAACGACCTCATCCTGGCTTAGGCCAACTCC
ACCGCGGCCCTATCCTTTTCGTGTGTGTCCGTTTGAGGCAAAAAGATACGCCAGACGGCC
CAGCGCGCGGGCGCAAACCGACGTTTGTTCTTTTTTGTCCGCTTTCGATTCATTTCCGGC
CCAAACTTGGTCTAGTTTTGAGGTGAAATGGACAGCGCGTGAACGCCGCACAAAAGGACG
GGACGCGCGCGCCTGTTCTCCCCTGGCTCGCCCGTCGGTGGCACAAAGCAGCATGGCCTT
CCCGCCCCCCACGCCCCATTCAATTTAATTTCCCCCAAAAACCCTCCCACGCCTCGCCCG
CCACCCTCCCGCCATGGACGATGCCCCGCCGAATTCCAACGACCCGACCGTCGTCCCGAC
CACTAAGGCGAAGAAGAAGAAGGCGCCCCAGGGTACGAACAAGCCGCAGTCGGAACTCAC
GTCGGAGGAGATCACAAAGCTGGACGCGGAATTGACCAAGAGGCGGAACCGACGGGCGGA
GGCGAAGAGGAAGGACGCCGCGGCCGCGTACGCCATCGAGCTGTTGTACATATGCCCTAG
AGGTAATAATAAA