Map Locations of contig_49950 (7674 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_49950

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_65247 3 2412 bp AK374119 Available Available None





CDS Structure of MLOC_65247






Contig Sequence (7674 bp)

>contig_49950 7674 assembly3_WGSMorex_rbca.fasta
TGCATCTTTTTTCAACACCCAGACCGTAATATAGGAGGTGCCTACATGGGCCGGCCCAGT
CCGGATATTTTCCTGTTTAAAACGTTTTTTATGACTTATAGGTGGCATTGGTGGATAATT
TTAGTCAACTTTAAGGGTAATTTGGATTACGTACGAAAGAAGCACTATTTGCTTTATTAG
TAGGTAAAGATATTATATTACATGTTGACCATTTTAAAAATGTAATCTAGTGCGTAAACT
TAACCAGTAGTGCATAATGGATTTTTTCATACCGGTGCCAATCGGGATTGGAAATGAACA
CTTTAACAAAATCAGGATAGGAGAAGAAAAAAACCATCTATAACTACGCATACACACCTC
GTCAAATCCTCACCAAAAAAAAAAAAAACAATTCCACATCTTATGCCGAGAGACACCTTA
GGATTGACAACATTTAAATGCGTTGTGATTGTGTGAGCATTGAGACCACAATTAGTAATG
GTGAAAAAGAGGATAAGTGGCAATAGATGAGATGTCATGTGTTAAAATAAATTACATGGG
CCTATTGACGAGTGTGGTATATTTTTTCCTTCCATGCAACACACTAACTCTTTTGCTAGA
AATGAGAAAGACAGAAAAACGTCTCAACGCGCCTACAATTGGTCCACACAGAAAACAACG
CAACTTTCCGTGACAGATATCGGGAGAAGTAGACACCAGAGTCCAGTCACAAGCTGGGAA
AAGAAGTGGGCAGGTCACAAATTCAGGGTTTGTTCGACTAACGGAACTGAATTGTCAGGT
TTGGTGAAAAAGACGTTGAACGCTAAATTTACTTAAGCATCCTGTCAAACATGGTTTCGA
AGGGATTTCATGAACCAAGTGGTTGCTTTTCCACCATCAAATTCTTCACAATATTAATAA
CTGACATATTTCATAGAAACATGTGCCAAAACGGTGATGTATAGTTGTATCAAATCGGAA
GCGAAGTAAGGCACACCTTTCGCGCACAAAAAACTAAGGCATCTACAGCATCATGATATT
TCTTCCTTTTTCCAACTCAAAAACATTCAAGCACCAATGTGAGCTACTACAATTGAGCAT
GTGGTGTCCAAACTAAAATGATTATCCTGTTGTGGTATCTGTGTTGAGATACCACACGCC
TGCCAAACTGTCAAGCGAACAAAACCAACAGGTGAGTCCCCTGATTCACACATACATGGC
AACTACAAAAGAGCCTCAATGTCAATCTCGACGAAAGTGCAGGGATCCGGAATGCCAAAT
TTTCTTAGCACCTGCATATAACAGACTAGGTCACTGTTCATAGATTATCATTCCATGGCA
TTTTTATTTTTTTGCATATGACCAAAAGAAATTACCTCAGCATGGACAATTCCAAAGTAG
CCCACCTGCTTTCCATCACTCATAACAATTTTGCACTGCCTTTTAGTAAAGAACTCAGGT
TCCTACAAGACAAGACATCGGTACAGATGTTCATAACAACCAAACTACCAAAGGAACGTC
GGATGTACCCAAATGCATCGAGAGTTTCAAATGCTTACACTTGAAGGAACATAGTAAGTC
TGACCGAAATTTATGTGTGGAGCGCTCACGATTTTGACAATCCTATCCACCAAACCCATA
ATTTCCTGGGTAATTGATAACAATTAGTCAAGGCTAAGAACAAAGCACTTTAAAAATTAC
TCCTGCACAAAAGTAATTGTTTATTTACCTCAAATCCAGAATTACTATTACAGTACAAAG
CTGCAAGCCGGCGATTATTAGAGGCACCAACATCACGTGAAGTATCCAATGACACTACAT
CACCAACTTCAAAAATCTGCACACATATAACAATGCTAAAAGTTATACTATGGCCAATTG
GTTATTACCAACATAAGCAGTTCTATGAAAGATGACAGATTCCTTTTAGAAAATCATGAT
AACATGTATTAACAAACATAATTATTACAAACCAATATTATGTGTCAGCCAATTTATTTA
TTTTTGAACAGTGGGGCTCGAAGGCCCCAGATGCATCATTAATATTTCAGCGGTGGTACC
GAGCATCTAGCAGCAGGACCCAAAGAAAAATACAAATTACAACCAGATCTCTGACTTATG
CAAGGAGGACCCCAGAAGATGAAAGTAAAATGCAATCAGGTCCTTAACAACCCCTGAGCA
GAACAAAGATCGCCGTCGCCGGGGACGAAATTGCTTGGTCCGACAAACCCTCCATGGTTG
TACGCCATGGACTCTGCACTGAAGTTGTACTGCCTCCCCTGTGGCAACTTAGCCGGGAGG
AACGAGAAGGGCCACCCTTCGGCCATAGGACCGTCTGGCCATCGTGGGCGCCGTAGCCTC
TCCAAGACCACCATTGGTGACAAGCGTCATCCCCATCTGCATCAACTCCACCACTTCTCG
TCTGCTGAAGGAACATGCAACGAAAGGAGAAGCTGGAGAACCTCCTTTGAGAGCAAGGAC
AGGCTCCATCCTCGCCAGAGTCATAGATCCGACGAGGAGAGGCACTGCTGGAGCGGAACT
TGCTGCGATTCTACACCGCTATCCCGGCCGCCACCATGACGACAGAGTGGGAAGGGGAGG
AGCACCACAGCAGCGTCTCCAAGTGCCACTGCAAGCTTATTGAGAGGGGATTCGCCAGAT
CCGCCGCCATCCCTTTGCCTCCACCATGAAGGCGCTGCTGAGGACGACGCGAACGGCCAC
CGGATTCTGCTCGCGAGATCCGAAGGCAGACTCCGCAACGGCATGAAGCCAGACCACAGC
ACAAGGCCGAACAACATAAATCTAAGCCTACTATCTACAGAAGAAGCCCGGCATCCCATC
CCATCCTTGCTCCAACCGACACCGCCGGGGGAGAAGAAAAGGGAAGGAGCCAGGGAGCGG
AAGACGACTCTCAACAAGCTAGGGAAAGAGAGAACCCGGTAGGGTTGGAGTGTGCTTGTC
AGCCAATAATTAGAATGTTGTTATATACATTAGCCACATGAAAAGCACCTCAGTAACACT
GCTAACACTAAGGAGATGAATATTATTGTTTGTTTTCATAAAGTACCTTTATGGGTCTTG
GATGGTCTATATTATGCTTCAGCGTTTTCAACAAACATGACATCAGACTGCTTCTTACAA
CCTGCAAGATCACAAGCAAAATAAACATATGTTTTGTACTGGAATAAGCACATGTGAATT
GTATAATTATATTTCAAGATCTTACATTAGAAACAAAATGTATTGATTTATTTTGCAATG
GGTAAGTGAAGACAGCTAAATATGAATGACCACATATAGCAGGAGTATGATGACAATATG
TATAACTATAGGATCATCCAAAAGGTAAATCAGTAAAATAATGCGGCACTAGAGAGTAGT
TGTCCATGCATTCTTGATTTTACTTGTATGCATATGTAAATTATCGACAATTATTCTCAA
AAACGAAGCTAATAAAGATACCAGGCATAGAAGGCCAGGCCTCAATGAATGAACACTTAC
ACAGCTCGCTGATTAACATGCAATTAACAACAGAATGACATACATTGTTCTACTGCAAGC
AGCTGTAACAAATAAATGAAAGATCCAATCATAAAGACACTCTTTAGTACTTGAGCAATT
CACCTCAAATTCAGAAGTACGGGGGTTTGCAATAATGACTGCTTTATTCCCATCGTCTGT
CCTGTTTAGCATGTCAAAGTTTTCTTCGTGTGAAGTCAAAACAAATGTGAGCACCTCCAT
ATAACCAGCTCTTGCAACCTGCCCCACAAACATTTTCTCCCAGTAAAATATCGATGAGTG
AACACAACTGAAGGATCGTACAAGGTACTGAATATTTTAAGCACATACCTCAGCACGAAT
TTTATCAGAGAAACGGTTTAGTGGTTGCCTTCCACCTATTGTCATAGACTTTGGCTTTGA
TTTTGGCACATTGTTGTACCCATAAGCTATAGCAACATCCTGTATGGAATGAAAATGAAA
ATCAAACCAGAAACTATCAGCCAATTCTAAATAATAACTACAAAAAAAACTTTGATAGGT
AGGGAATTGCATATGTTACCTCTGCTAGATCACGAGCATGCAGAACATCACTCCTTGTAG
GAGGGACATACACCGAAATACAAGGCTCCCCATTTGATGAACAAAGTTCCGCTTGCAATT
GCATTTTGTTCAGAAGGGAGATAACCTGAACTTTCAAATACTCAGTTGTATCATCTCACT
TGCTCAAAGCTGCGAACTTAAATTCAAAGAACTCAAGCAGAAAACATTGCCTTACATAAT
TATCAAAAATATTTGTTTAATTTAATTTTGCATACAGATACAGGTAGAACATTGTAATTT
GCATCAGAAAAACCAGCTGTTCTACAGTAAAGATCAAAATCTGTCACTTATTTGAACATG
GTTTTTCAGGCTTCGATAAAATATACCTGCATCTCATCTAGGGAGATTCCAATGGGTCCA
ACAATATCAGAGAGCGAAACTTCCATTTTATAACATGAAAGATCAGGGTAAATGGCTGTG
CTTCCATCATAAGATACCACTTCAACTGGTTCCACTTCAAACTTATTTTCACAGTACTCC
GAAAACATTGCAACCTAGACAACATAGGTAGCAGGTGCATCAACAAAATAAATCTAATCT
TCATCCAAAAGGACAGCACATTTCCCATCTAAAAGATAGCAAGCATTACATATACATAAC
ACCTACCATTGTATTCAGAACAATGTTTGCTTTTGTAAGATCTGTAGCAGTGCATTCGAT
AAACACATTCCTTGTTTTCAGGGTGATAGCAGAATGTGCACCATTGATGATAGGAGGTAA
CGATAATACAGTTCTGCAAGTATTAAAGTGTCAGTTTGCTGTATGAGCAGTACAAACCAA
GGACCCAGAATAAGTACCAGAAGAGTCCTGGTACAGTGGTACAAACAATTTAAGCGAAAT
ATTCAACTGGTAACTAAACATGTGTCTTGCCTTTTATAACAAGACTATACACCTTGTAAC
AAAAATAAGTTGAGAAATGTAACCACAATACCATGATATTGGTTTACCTGTTGCTATCAT
ATATAACTGGGTAAACTGGAGAGTTCTCGATAATATGCAAAAACTTCTTCAACTTCATGT
CAGACTGCCAAAAGAAAGCGTAAGCTATCGGTGACCAATATGTACAGAGAGCGTAATTAA
GGAAAATCAGAATTAAGCACCTAGGGTATATAACTGCAGAACTTCAAAAAATCCTGGTTC
CCATGGTCATAAGTAGCAATATTAAGTGTAGCAAGGAACTATAACCTGTGGCATAGCTAC
TTACTCTGTAGAAATCCATCAATGCATCCGCTCTGAACTTTTGCTCCTGAACCAGTATAA
CAAAGCAAACGAAAAGAAGAAATGTGAGTCAAAACTGCTGTTTTCCCAGAAACAAAAGAC
TGCAGAAATGCTCTAACAATAGCGTGTAAAGTGGGGATAATGGTGAGTTATTTACCTGTT
TTAATGGGATAAAATTGATTTCATGTGGTGATAGAGCCTGAAAAAGATTAATTAATGTGT
CAAATAAAGGATGATAGGAATCAACAGGGGCATTTGCATTGTTACATCATCAGCTATAAA
CGAAGAACAAATATTTATGATTTTTTATCAAAATGAAAAAAAGCTTATCTGAAAGAGGCA
CATAAGAAGAGATATATACTAGCCAAGAATTGCTTGCAAGGTAGAAAATTCCCGCAAAAA
TCTCGAAACATAAAGAAAAATAATATCAACTTATGGTACACTTGAAAAGCTCAGCACCTG
ATGGTGTTTCTTTGGATTTACTTCAACTAGCCAAGCTGTCAAAGAATATGGACAGCATGA
AATAGCACTGTAATTGGGGACGTCCCATCCAAACACCACAATTCAGCATGTACGTCAATT
CAATCAACAACTATAAACACGAAACCATGCCTAGGATGCACAATGGTTCCAAGGTTCATG
CACCAGTTACACCAAAATTAACACCGATTCTCCGAATTTCCATCTGAAGTCAATAGCATC
AGGAACAGTTTGATTGCACACAGGTCAGGGAGACCTACTCTTCAAATTTTACTAACTAGA
CCTGAATCCCCACCTTTCACCTGTCAGTCAACCTCCCTGGAATCAAAAGCAGTCCGCAAA
AATGGAACCGATTGTACTCATAGGCTGGAATAACACCAAACAGTGGGGAGCACCTTGGGC
TCGTGTTACAAAGCTTCAGACCATAATGCAATAGGTTTAAATAACAGGGCCCATGTTTCC
CCCAAATTATGACTTCCCTAAAATGCTGGTGAAAAGGAGCTCCAGTTTATCAATAGTTTT
TAGCTGAGAGTAAGCTCCAACTTGAAGACAGCCTGTTTAGAAATATACTTTGCTTCTGGT
GAACTCAAGACAAACCTGAATCTCCCCCAAAGAGGGCCTGAGAAAGCGGGAGGGAGCTTT
TGGGGCCAATAAGCTATAGCCTTGACATGCACTAGCTTCATGATGTGTGCAAAATCAATT
AAATGGACCACAACATGCACTATCCCTAAAAAACTTAACTATCCTTGGGGGAAAAAGCTT
TAGCAATGATCCTCGAACAGAAATATGGGCCCCCACCCACCAACCACAGAGAAGAACAGA
AAAATGAAGAACACACACAGAATGAAATAGCAAGGATGTGCCTGACGGAAATACAAAGCT
CTCTGGGATGTTTGATGGAATTAATAAGGAGCATCAACAAACTGTAGCTAATTGCAGCAA
GGTCAAAAATCTACCTCGTATGAGAAGGGTCCTTGCAGAGTGTCCAAATCATGGGTACCG
ATAGCAACAAGAGTTCTCTTCCTGTCCTCCAGCACAGCACAATGAGTTAACTAAGGGTGA
TGATCTTCAACTCACATACAACAAACTAACAGACAACTGCTAGCCAGACAAGTTATACCG
GCAAATATTTTGATGGAGTTTGTCTTGAAGATCAATGAAGCTGTTGTATCTGACTTCATC
AAAAGTTACTCCTCTTAGGACAGCACAAACTACATATGGTCTAATTTGTGAGGTCTGCAA
AAGAAATAAATATCAGCTGATCAAGGCTTTGACTTTCCTTTAGTAGATAGATGTGTGCAT
ACAAAATCCATTACCTTCTAGAGAAACAGGGTCAAGATTTTAAAAATGACGTAATCCATT
ACTTGGCATGTCATCTCTAAGAATTGCATTTCTTCTTTCTGCTATATTACTGGTCAGGAG
TACAACGGAACATTTATGACACACATGGATTAAGCATGACAAACATATGTATAGAAAATT
AAACTAGTGCGTTAAGTCCTGCCTTTGTTTTCCTTTTCCAAATCCCTTTTTTGTCATTCA
TTTAACTCACGGAGTCATTTCTCCATTTTTTAATGTTTTTTATCCAGAATATGCACCAAT
AATGAAGTTGTTCAAGAGAGTTTCCAATTGAGACAAACACCAAACCCTTAGACTCTGTCT
ACCGATTTTATCCACAGCCCATACAGAACCGTTACCCAGAAGTTAGCAAAACAATGAAGA
TACTCAACCTTTGTTTTTTCTCATATTTTTTAGTATATTAACTGAAAATTTGGCATATGT
CATAACATGGCCATAAGAAATTATAAAGGTAAAATTCATTAAGCTTATGTATAATAAAGA
GCTAGATGAGGGTAAAAATGAACCTTCTTGGTCAACCCATTACCTGTGGTCTAA