morexGenes - Barley RNA-seq Database

Contig contig_49948
Source Contig contig_49948
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_49948 (6552 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_49948

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_65243	1	1767 bp	MLOC_65243.1	Available	Available	LOC_Os11g36480.2, FRAME:+3, EVALUE:1e-135, 13111.m09241 protein zinc knuckle domain containing protein, expressed
CDS Structure of MLOC_65243

Contig Sequence (6552 bp)

>contig_49948 6552 assembly3_WGSMorex_rbca.fasta
GCACGGCGCCCCGCGCCCGTGCCCGTCAGCGACGACGAGGACGAGGCGGGCAACGAGGAC
CTCACCCTCGAGATCGTCGCGCGGGCGCGGCGGCGCGAGGCCGCGGGAGGCCAGCCCGGG
TTCGCCGAGGTGCTCTCCCTGTCCTCCGACGAGGAGGTGGACGAGGACGCGGTCGTGGAG
CTCGGCGAGGCCGACCCCAGCAGGAGGAAGGAGAAGAAGAAGAAGAAGCAGCGGCGCAAG
GAGAGGAGGAAGAAGCAGCGCAAGGAGGACGCCGCCCCCGCCCCCGAGGAGGAGGTAATT
GTTGTTTGGCCTAAGCTTAGCTCGTGATTATGCAGTATCATTGTGTTTACATTAGCAATC
GAAATATCGAACACACGCATGATAGAGGCTTTAGTAACGATGTCCGGTAGAATAACTTTT
GACTTGGTAACGATGTCCTATAGAATCGCTTTTAATTGTTTGCCTTTGCAACGTTTGGAT
CTAGAGGAGCATGCCCGTTGCATCTTCTTTGCTAATGCTGCATTGTTGCTAGGATCATTT
GGTTAACTATATGCTTTACCAGGAGTCGACGGTCGGCAGTACCCAATTTCCTTCTTTGGA
AACGGTATAAAAGGCAGTATTCTGTTTCCTACACAGAAGGCACACATACTTTTGGTTTCG
TACAAATCAAAGTGATGCAATGTTTTTGTTTTTATCCGTTATAAAAGTAAGTAAAGCATG
TGCACGCTAAAACATTCGTGAATTGAATAGTGGATTGAAAACCTTGGCTTGTGTAGTGCA
ACAGATTTTATCTTGGTGGATCGACATCTGTGTTTGATGTTCCTTTGTTGTGAACAAATA
TGATAGTCTTCCTGGAGCTGCGGTTTATGAATGCATCTGTCCCTTTCAGCCTCAGGTTGC
TGGAGCCCAGGAAGGACAAACCGGGACAGCAGAATCAGTGCTCATCCAAAATGGCGTTGA
TGTCCCTGTATCCGACAACACAGTTCTGCGGAAGCTTCTTGTAAGTGCAAGTGGGTTTTT
CCTTGCAGTGAATTTCCTTGTACATGGATAACTGTGGTAAAGTTGATAGTTATTTTGCTT
CTGCTCATGACCAGCGTATACCAAGATACTTTGATCCTGGGGAAACTATATTGGAGACTT
GCTTTAACTGTGGTGAAGAAGGTCATGTAGCGGTGAACTGCCCAATGGAGAAGCGGAAGA
AGCCTTGCTTCGTTTGTGGATTGTTCGGACACAATGCGAAGCAGTGCACGCAGGTTGGTC
TCTCTAGCTCGGACGAATTATCGCTCCGTGACTTGGGTATGTCCACTCATACCCTTGATG
AGCTCACTGTATATGGTTTCATTTGCCAGAGATTGTTTCCTTGCTTTTTTATGTGTCTGT
CTCGTTTAGGGTGCCATCATCTCATTTAGGTTGCCACCATGCAAATTAAGACCTTGATTA
ACCTGTCATTCAATATAACTTAGACGACAAGTTGTTGGGTACTTGATCGTACCCATTTGC
TGTATTCCAACTTCAACATTAAATGCAAAACGCCAAAAACATTAGAAGAACGTATTCTGT
TCAAATCCAGTCTTCAGTTAATCTTAATTTAAACAACTCATTTCTACCCATCATGCATGT
TCATATTTTGCTTCAAGTAGTCTATGCTTTCCAGATCTATTTGTTCACTGTTGTTCTTGT
GTCATACGCATCATACCATTTGAAGGGGAGTGATACCCGTGTTTTATATCCTGTGATTTC
TTTGGAGAGATCTTCCTTTCAGACTGATCCATGCATGCAGGCATATTCATAGTTTACAAT
TTCATTTTTTGTTAAATCTGAATGCTTGATGTAATTTTTTGGCATGCAGATATTCCAGTA
GTACAGTCTGCATTGCCTGTGTCCTGGGTTGCACATGTAGATTATTCTGGGATCACATCC
TAAATAGCCTTAATCTGCAAATGCTTCTTGCCAGTGGTTGTGATGGTCGTGGGTTGCACA
TGTAGATTATTCTGGGATCACATCCTAAATAGCCTTAATCTGCAAATGCTTCTTGCCAGT
GGTTGTGATGGTCAGGAATCAATTATCTCTTAATTCTTTTTGTAGGGTCAAGAGTGTTTC
ATCTGCAAAAAAGGAGGTCATATGGCGAAAGACTGCCCTGACAAGCACACAAAGAATACT
CAGCAGTGCACCGCATTATGCTTGAGATGCGGAGAAACAGGCCATGATATGTTTGGATGT
TCCAATGATTATCCACCGGATGATGTCAAGGTGAGTTCTTTGTCGCCATAATTATCTTCT
CAAATTTTCATCTTGCTGCCTCAGATGAGTGTTCATATGCTGGTTACTTGCTTCTTTATG
CAAGAAACGAAGTGCTGCTTTGGGTTTTCAGAATATGCTTATGAAAGCCTGAAAGATGTT
CTTTCTCCAAAATTTTGATCTAAAGAAAAAAGGCATATAAATGTATTGTGCCTTGAGCTG
GTTGATTATGTTGGTAGGATACACTTGTTTACCCTGTTAACTGTGCGGCTCATAAATTAT
GTTAAATTTGTAATTTGATTAATCGGATCATTTTTATGTTAGGCTTTTCCTGCCATTCTA
TGCTAATCCAGTCCCTTGATCCGTACATGTAAAAAAATTCCATTTAATAACACACAATAC
AAGATAAATTATTCTGTATATGGTTGAACAGTCTCAGTCAAGCTGCAACTTTGAAGTCGC
TGAAGTCTAGTCATGGAAATTGCAAATTTGCCCCCCTCCCTCCTAACTATCCATCTTGGT
TGACCATGCAGGAAATAAAATGCTATGTGTGCAAGCAGAATGGTCACCTCTGTTGTACCG
ACTTCGCTGATAGTTGTTCAAAAGAAGTTACTTGTTATAACTGTGCCCAATCTGGTCATA
CTGGTTTGGTAAGTTTTAATCTTTCTATCCTCATGTGTATCTGTCTGTTTCTTTTCATAC
CAGTTGATTACTAACCAACATTTGATCATAGGGATGTGCCAAGCAACGTAGGGAGACGAG
TGTTGCGACAACTCCGACCTTGTGCTACAAATGTGGCGAAGATGGTCACTTTGCACGTGG
TTGCACAAATAGTGCTAAGGTAAGCATCTCATGATTTCCTCTGCTGATAAGAATGGCCTG
GGTATTCATCTTGTGCACGCTATTATTTTTGCAGCCCGGTCGGTTCAAGGGCGAGTTGTC
ATCGCATAGTCGTCGAAAGGACAGATGGAAAAACGACTCTGGCCCTAGATCAGCTCCTCA
TGGTTCTCACAAAAGAAAAAGCCCCCTATTCGATGATAGATGGGAGACACCTCATGGTAG
TGGTAAATCCAGAGCCAGGGGTGGTTGGATTCCCGAGGACCATGACGATCTGCCATCTAA
GAAGTACAAAGGCAATGGGTGGGACTCCCAGTCTACTCCTAAGAAGCACTACAATAATCA
CCACCAGCGCTCCTCAGGCGGTGACTATTCAAGTCCTCAAGGACAAGATTTTTCATGGCA
CAATGCACAGTATTCGACAAGTGCGAGGAAACATGGGTCTTCTTCATCGTCAAGATTTGC
CAGCAACACCCATCACCGCTTTGAAAGAAGTTAGGCTGGAGCTTACCTTTGGTTTTGTTG
TTCATTTGACAGTAGGTCCCTTAGGGATGTACTCTGCCTGTAATACCCGGTTCCCTGAAA
GAGCTGTTTTCTGTATCTTCAGAGCTGTATACGTTTTGTCCATTCCTGGTCTGGGCATGT
TTTGTGTTGCACTTCCAATGCCTGTCCACTGCAAACACGGCATGTCACTCTGCACTCTGC
GCCGCTACACAGCGTAAGTTTCTTGTCTACTAATGCAAGAGTGCTATATTATTTTTGACA
ACCCAATGATTTTCTGCCACTGTATCTGGACATTTTTGCAGTGTTCTATAAAGTCGAGCA
ACTACCATGGTACTCCATCTGTAAACTAATATAAGAGCATTTAGATCATTAAAGTAGTGA
TCTAAACGCTTTTATATTAATTTACAGAGGGAAAAGTAGTGATCTAAACGTTTTTATATT
AATGTACAGAGGGAGTACTTCGTACAACGCGAGTTGAAATATAAGACAATGTACTTTCGC
ATGTGGGTGCAAATAAACAAGGGTACAGTTCCATAGTAGATCCAGGCAAGCGTAAGCGTC
AATGAGCCTGGGCAAGTCATAACCATTAAAAGCATCTCTAGCAAAGGTGCTATAGTCTTG
ATCTGCAAAATCCGTTTACAGTTCGTCCTAATTGATTTTCTGGCCACCTTTTGCCCGATG
CAGAACATATACCATAAATCACTCGCAAAATTTAAAACTGAATATAAACATGTTCCCGCT
ACATTTTAGATAGTATGGACCTCCCCGGAGTTCACACACACATATAATTCACACATTATA
CACAAACAGACTAAATCCTAGACAGAGTGCGTCGATGGCTCATGGCTTCACACCGAGGTG
GTACGTGGGTTTGTAGATGGCATAGGAGAGCTCGTACTGCGCGTGCGCCGCCTCGAAGCG
TGCGGTGGCGTCCTCTTCATCGACGTCCAAAACCTCCTTCGTGGCGAATCGTACAACCTC
CGCCTCACGGAGACATTACTAGTAAAAATCATACAGACAACCACCTAATAGTAGCACGAG
CAGGAGGGCCGCGATGCGGTTAGTTAGCAGCAATGCGTGGCAACAGGCTGTGCTGCAGGT
AATATATAGCAGGAGCACGGTCAACGTGATCCCGCACTACTACTAAGTGGTCCCCATCAT
GCCCCAGGACAGACCACGCCAATAGCGTGGGATCTAAAACCTGCGCTGCAGCCGACGAGA
TAGCAGAAGCGTGGGTGCCAGAGGCCGCGCTACTGCTACGGATACACGGACCCAACTGGT
GGGCCCTGTTAAACATGATGTAACGTCATGTAATAGGATAGATTTCACGGCTGCGGTTAG
GAGGTTGTTGATACCCTAATGAGGTTTATCTTCTTCAACCGTAGCTGGCTCTATCTCCTC
CTTCTATTCATTGATTCTCAAGTTGTAATCCCAACCGAGTGTATGTCACTATCCAGGAAG
GTGCGCCCGTGCTATATAACACACAACGGGTCCCTCTAACGAGGTAAGACGTTTACCGCA
AATCTCACATGGTACCAAAGCCTCCTCTTCCAATCTCTAGCTCCAAAACCCTGAACCAAG
CACTAGCCATGTCTTCCTCCGGTGCTTCCCAGCCGAGCCTCAACGGGCAGGTCACGAAGA
AGCTCTCCCGCTCGAACTACGTGTTGTGGCGTGCCCAAATCACGCCGCAGCTAAGGGGTG
CCGATGTCTTCGGCTACGTCTATGGCACCTCACCGGAGCCGGCCAAGTTTCTCGTTGCCA
AAGACAAGGACGACAAGGAAACCGCTGAGCCCAACCCTCCCCACCCAATCTGGGTCCGGG
AGGATCAGCAGGTGCTTGGTTACCTACTGAACAACCTCACCAAAGAGGTTCTCATCACGA
TGACCGCAGTCACCTCAACGCACACGCTCTGGGGGGTGCTGGCAAGCATGGTCTCGTCAC
AGTCCTTGAGCCATGTCACAACATCTGCACTGCCTTGATTAATGCGCAGAAGGCAACCAA
TTGGTGGTCACCTACTTCGCCTTCATGTGCGGCCTCGTTGACGAGCTCGCAGCCGCAGGC
AAGCCGATCGAGGATGATGAGCTGATCTCCTACCTCTTCCATGGGCTGGACATGGACTAC
TAGTCGCTCACCTCTGCCCTCGACGCCCTCTACGCCATGCTCAACAACTTTGACCAACGC
ATCACCCAGTTTCAAAACTCGGACGACGGCTTTAGGTCCTCCGGAAACGCGGCGACTCAC
GGACGTCTTGGCTTTTCCTCCCGTTCCCGTGGCTCTCCTCGCTCTAAGGGCAAGCCCGAC
AACACCAACTCCCGCAATAGCCACCCCTCCACCAACAACACGGGTCGCGGTGGTGGCTCC
AACAACTCCTGCCCGGATCCTGTGCGATGCCAAATCTTTGGCAAACCTTGGCACATCGCC
AAGGACTGTTGGTATCGCTTTGACGAAGATGAAGCCTCCTCTGAAGATGATGCGAAGGTT
GTTGCTGCTGCCGATGGATCCTATGGCGTCGAAACAAACCGGTACCTTGACAGTGGTGCC
ACGAACCATCTCACTGGTGGACTTGAAAAGGTAACTCTCCGAGAGAAATACCAAGGGAAG
GACCAGATTCACACAACCAGCGGTGCAGGTATGCGATTCTGTCACATTGATCATTCCGTC
ATTCGTACCCCTTCTCGTAGTCCATCTTAGGAAAATTCTGCATGTCCCTAGTGCACACAA
AATCTTCTCTCCGTTCATCGCATCACCATTGATAACCATGTTTTCATTGAGTTTCATCCA
TTTTTATTTTTGATAAAGGACCAGGCCACGAAGAAAGTACTCTATCAAGGTAGATGTGTT
CGAGGTCTTTACCCGATGATTCCGGAGCTTAGAAGATACAATAAACAAGCTTGTGGTGTG
ATACATCTCCAACGTATCTNNNNNNNNNNNNNNNNNCATGCTATTATCTTGTCAAACTTG
GTATGTTTTGCA