Map Locations of contig_49920 (7575 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_49920

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_65221 2 1944 bp MLOC_65221.1 Available Available LOC_Os09g12530.1, FRAME:+2, EVALUE:0.0, 13109.m01134 protein glycosyl transferase, group 1 domain containing protein, expressed





CDS Structure of MLOC_65221






Contig Sequence (7575 bp)

>contig_49920 7575 assembly3_WGSMorex_rbca.fasta
AGCCTAAATCGTAATTATTTTAAAGAACCTATTTACCCTCCCTCTAGGTGACATCCATGT
CCTTTCAGTTGGGCCATGGCGCTTGTTCGTTTGGGCCAAAACAAACACACCCGGACTCAA
TGGGGTCATGCGTTGGAGTTGGCCTAAACTCCCTGTGAATCCACAATATACACAAGAGGC
AACCACTTTTAGGGTTCCCGTCCTCCATTTCCCCTATCCCTCCGTCGCAAATCCAGTCTC
CTCCAACGAGAAATCACTCTCCTCCAACAACAATTTGCGGCATGCGTAGCCACCGGATCC
GAGCCCTAATGTCGTGCATGGGTGGCAGAAGGGGTGGCCGGGGGTTCGCGGCCGCGCCGA
CGATCTGCCTCGCAAGCATCGCAACGATGATGAGACCAGGAGCACCTTCCTCCGCCCGCC
GGTGGAGGAGTGGCGCAAGGAGAAGACACGTTTGCACGATGCTCTCTCGTGTAGTTCTGG
CCAGGAGGAACTTTGAGAGGATGGATCGGATCTTCTCGCCCACGGCGAAGCATCTCCGGT
GATGGAAAAAGCGTGCTTCGATGCGAAGGAGGCCGCCGCCACTAGAGACGAAGTTCCATC
CGCACAAGTGAAGGCATTGAAGAAGGAGTACGAGCTCACCTTCGTCGTCTCCAACTCGCT
CATGGAGTACCACCTCCACGTCAAGAAGCCCGGTGATGATGATGATGCGTAGTCCTAGTT
TAATTTTGTTTTATGCATTGTCTTTCTGTATGAACTCCATTTCTGTATATTGTACTTTAA
TGATGTAATATGTGGTGTGAAATGCTAGTTTGAATATGACGATATGTATTTACACGATCT
ATTCTTTCTCATCGTCCGCTGTCCTCCAAATTTGGTTTATGGGATGCCGTAATTTTTTTT
ACGAGACGACCATTTACCAGGTCTGCTAGAGATGCTTTTATCCACTTTTACAGGGTTCCC
TATTCTCTCTCGGAGCATCCTTTGATCTACGTAAGCTAGCTTAGCTTGCCAATGTAGGTC
TTGAGAGCATCTCCAACCGGACCTCTCGATTCCTACCTATATGCCCGGGACTAAAATCTA
CCACCCAACTAGACATCTCCAAAATTAGTCCATATGTCTGCGCTATTCTGACACTCCTCA
AACTCAACCCATATTTGTGGCGAATTTGTAATTGCCCACCTATATTTTATGTCGGTGTCA
CTGAGTTGTGCATAAAGAATGTAAAAGTTGATTTTTTGGTGAAGGCTATAAATACCCCTC
CACCATCACCTACTCCGAGAGAACAACCAGGACAAAGCATACACCTTCATATGCATTTTC
TGAGAGAGAACCACCAACTCATGTGTTTAGATCAACGGATTCCATTTCTATCATAAGATC
CTTGATTTCTAGCTTTCCCAAGTTGCTTTACACCCAATTCTTCTCTTCTACCAAGTCAAA
TTCTGTGAGAGAGTGATTGAGTGCTGAGAAGACTATATTTTGAAGCAAAAGAGATAGGAT
TTCATCATTGGCACACCATCTATTACATTTTGGGGAGTGGTGTCTTCTAGATTGTTTAGG
TGTCATTTTGGAGCCTCCAAATCGTGCGGATATGAACCAAGAAGTTTGTAAGGGCAATGA
GATCGCCTACTTGGTGAAGATCTACCCCGAGTGAGGCTAGTCCTTCGTGGGCGGAAGCTA
TGATGACATAAATAAGGTTGCTTCTTTATGGACCCTTCATGCGTGGAGCCCTCCGTAAAC
TCGCACAACCATTATCCTCCGTGGATTGAAGTCTCCATCAACATGGACGTACGATAACAT
CACCTATCAGAATCACGCCAAAAACACCGCGTCTTCATTGCCTTTCATTTCTCTGCCCCT
CGTTTACATACATATGCAATGTCTCTTCTTTCCGTTGCTCAAATCTTTGACTTGCATGTG
TAGGGTGTTGCTTGGCTTGATATAATTGCTAAAACTTGCCTACAACTAAAATTGGAAAAA
TGATAAGTTTTTATTTAGTCAAATAGTTTAATCACCTCCCTCTAGACATACTCTCGATTC
TACAAAGACGATGTTGGACACCATAATACCAAGTAGGCACAAAGTGTATCTTCAAAGGGA
CAAATCTTAGACTTTAACTATTATGTCATGGGTCTATGATATTCTCAAACGTACCTATAA
TCTTTGTATGATTCGTGCTACATTGCTATCAATTACATATACTTTGGACGTAATGTTTAT
TGAATTAACATAATAATAATAATTTAAAGTCCAATGACAGTTTCTGTTTTTGGTATTTCT
AAGAAACACCACAAAAAAGTCAGAGAAAACCAAACAAAAATAGGTTTGGAAGTTTCATGA
CGAAAGAGGACCAGGGCCAAGACTTCACCCATGACGGATCCCATAGGGGTGTATGCGCAT
CGAGAGCCTCCTAGAGGCGCCCACCTTACAAGGGGGGCTGCACACCAAGGGGCCCAATTT
TGGCGATTGAGAACTCTTTGCGTCACCGATTTTCATGACCGATGATGGGTCTCCTGCGCT
CGCAAGGATGGCGAGGGGTGCAGCGAGGTGGGGCTTTCCATCCGACGATCATTGGACCGA
GGATGGCCGGCGACGATGACGACATGGTTTAGCCAGAAAGCCGAGGGCGAGCCAAAAAAA
AGTGACTCGACCATATTTTCCGTGAGAAAGACCGTGATTGGACTAAATAGGAGCAAGTGG
AGGAAAATTTTAGGGGGAAAACCATATTTGTGGAAGTAAACTTTATATGATTATTTTTGC
AAAGAAACTTTATAAGATTATAAGATATCTGCTAGATGATGCTTAATCCCTAAAAAGTTC
CCCTCAAATAACTTTTTATAAGGAAAAATATGAGTTAAATGGAAATTCGAGGGAAGGGAT
GCTCTCACTGAGCTACCCACGTCCGTATTCCCTGCCTGCCGATCTGCCTCGCCGACGACT
GAGCTCTCCGTCGGTCAGCCACGACGCAGCCGGCCTCGTGCCCCACCGCCGTCTCGGCTA
CCATGCCAGGCCCACCTCCGGCACAGGCTCTCCCTCCAGCACCCAAACCCAGAGCCAAGC
GCCACCTCCTTCTCCTCCTCACGGCGCCGTCCCTCCTCGCCCTCGTCCTCGCCGTGCTCT
TCGCCACCTCAAGCAACCCGCTGCCACGCCTCGTCCACCTTCTCCTCAGACCGAGGTCTT
CCCTCCTCAGCCCGCCGGAGCCAGTCCCCGCGGCCGATACCTCGACGGATGCGGGACGCC
CGCCATGTGTTCTATGGATGGCCCCTTTCGCCTCCGGCGGCGGCTACTGCTCCGAGGCTT
GGTCCTACGTCGCCTCGCTTGACGAGAATGTCTCTGAAGGCGTCGGTGCGAACTTCACGC
TCTCAATCGCGCACCACGGCGACCTCGAGTCGCCGGAGTTCTGGCAGGGCTTGCCCGAGC
AGTCCAAGAACTTGGCGTACAGGCTCGCCACTGCGCGGTGTGAGCTCTCTCGGGCTGTCG
TTGTGTGCCACAGCGAGCCTGGCGCGTGGTACCCGCCGATGTACGAGTCTCTGCCTTGCC
CGCCTACCGGATACGACGAGCCGGCGTTCGTCATTGGCCGGACGATGTTCGAGACTGACC
GTGTCTCGCCGGAGCATGTCAGGCGCTGTAACCAGATGGATGCTGTCTGGGTACCGACAG
AGTTCCACGTCTCCACATTCGTGAAGAGCGGGGTCGATCCCTCCAAGGTCGTCAAGGTAG
TGCAGGCCGTCGATGTCACGTTCTTTGATCCGGCCAAGCACGTCGCCTTTCCTCTTCCGA
TTGGTTTCTCTGTCATGGCGCCCGATGATTCTACATGGAATCCTGATAGCTCCAAAGGCA
AAGGTTTTGTGTTTCTTAGTGTGTTCAAATGGGAGCAGAGGAAGGGCTGGGATGTGCTTC
TGACAGCCTATCTGCAGGAGTTCTCTGGAGCTGATGATGTTGTACTCTACCTACTGACCA
ATGCTTACCACTCTGACACTGATTTTGGAGGGAAAATCCACAGATTTATGAACAAATCCA
GCATTGAGGAGCCAGTGCTAGGATGGGCAGAAGTCCGGGTGGTTGATGAGCATGTCCCAC
AGTCCGACCTTCCAAGGTTGTACAAGGCTGCAGATGCATTTGTGCTACCTTCCCGTGGCG
AGGGGTGGGGAAGGCCGGTGGTCGAAGCCATGGCCATGGAACTGCCAGTTATTGTGACAA
ATTGGTCAGGCTCAACAGAGTACCTGACTGAAGAGAATGGGTACCCACTGGACGTGGACA
GGCTGACTGAGGTCACAGAAGGGCCATTCAAGGGTCATCTCTGCGCTGAGCCATCAGTTG
ATCATCTGAGAGCTTTGATGAGGCGTGTCTTTGGTGATCAGGAGGAGGCGAGGAGAAAAG
GGAGGAAGGCAAGGGAAGACATGGTCGAGAGGTTTTCGCCAGAGGTTGTGGCAAGGATTG
TTGCTGATCAGATACAACAGGTGGTTGTCAGTACTTAGTAGATGGATAACCGAAATCTGA
TCACAAATTTCAAAGGAAAGCAGATATCATACACCACACATATGATGTAGCCATGTAGGT
ATGGTAAGCTTGTTAGTCATTTGCTGCTTCGTAGGAGTTATTTGTAGTAGTTTCTGCAAT
GGTGGGGATAATTGGTGGCTGTTGTTCATGTGCCTTATGCCATCATGATTTGAATGGTTC
CTGAGCCTGTTATGGACTTATTGCTTCATACTGTTAGTTTTTTATCAACTTGACATTTTA
CTGTTAAAAGAACAAACTATTGAACGTGACCATTCCGCCCCTGCCCTTGCGTGGTATTTG
CACCTTCCATTTTAGTTAGTACTCCCTCCGTAAAGTAATATAAGACATTTTAGATCACTA
TTTAGTGATCTAAAACATCTTATATTACTTTTCAGAGGTAGTACATTAAAGTTTGCTTAG
GTTGGTCTCTACAAACTAGACCATGGTACATTTAAATTATGTTCATCACTTTTCATATCC
ACAAAGAGCATTCAGTTATATCAAAATGAAAATCTAGCCAATTAAAGTTCAGCCATCTTA
CCCGGGCCAACAGAAGGAAGATTTCGAGACCCCTTTCAAAAAATGCAGCAGTGACAATGA
TTCATCAGAAATCATCAACAGATTAAGAATTCATAGAAGAAGCAGATGCATAAGGAGTGG
TTTTCAATCCAGCCAGTTAAGTTATCTTCCGTTGTTGCATCAGTCAAAGAAACAATAGAA
GAGGTGTCAGTATGGCACTTGATCAACCTTGCATGCCAGGTAGTGCCTTGTTTCTTTCGT
TCTATGTTGTAGCACGCCTTTTGTTGTGCCCTTTGCGGGACATATTGTGTTGTTGAAACT
GGAGTTTAGAATCAGGTTGTAGATACTAATTTACTTTTCCAGCACAACACAGTTCTTGCA
AAGTTTTAAATTCAATCCTTGTATCGAGTTCAGTTATAGGCTTGCTGTTTGAAGTAAAAC
ATAACATAAGACATGGCTTATCTGTTACTGGGTTGCCAAGTGTGAATCACATGCAACTGT
AATTGAGTTACTGTGATACAAAAAGAAATAGTCAACTGCAATGCTTTTTATATCATGCAA
AACAAAGCAATGAAGTTTGTTCCCTATGTCGCACGTTATTAAAATTGCAACTCCCTCCGA
TCCAAATTAACTGACGCACACTTGGTACAGCTTTATACTAAAGCTGTACTAAGTGTGCGT
CAGTTAATTTGGATCGGAGGGAGCACACCTTTTTTTATCAGTATTCACATATGTGCACCA
CACACCATTCCTTTCGGCTATACAGTTCAGCTGAGCAAAGGCACAGAAAAGTATATTCTT
CCAGTTAATTTTATATGTTTTAATGGTTTCATATTATGTCTTTTCCTTGCTAGGATGCAG
ATACTATTAACTATTTTATGATGTGAAATACCTCAGTTAATGCATTTTTTTCTGACAAAA
TCCCAGTTTCCATGAGTCAAACTTTGTAATTTGCTTGTGCATAAACAAATCAACGGATGC
ATAAAGCGGTTGATTTGTTGGTGCGTTGTTGGATTTCATCCTATCCTTTGTTTTTATTAC
ATCTGCCTCCGATAAACGTCCAGTGTCCGGAAGCGGATATTCATTTGAGTTTGACCTTCC
CTAAAAAATTGAAGCTAAGCAGAAGATCTCCAGCTCATGGTGGGTAGAGGGAGTATGTTA
TAACCAGTTTGGCTTGACAATTTTTTCTGTCTCAGTCCAGAAGCCCAAGGCACTGATGAA
TATTCAGAGCAAGAATGTTTCTGAGGCACCAAGGAGCTGGAGGAGGTAGGAGAATGTTGG
CTGTCAGGGTAACAAATGTGTGAGACACCAAACATGCAGCTTCAGTAATGCAAGCGTACC
TTGAGGTTAGCTCATAGACAACCATTTCGCTGCCCAACTGTTCTGATGCGGATATTACGA
ACGATATGCTGCAGTGTTGTGTTTTTTGCGGCGTCCCAAGTGTTCCAGCCGGCGACTTTT
TTCGGCGATTTGTTGCACTGCTGTGTTTGAAATGCTGCAAACGCGTGTTGTGTTGTGTTT
TGACTTTTGACACAATAACGTGAGAAAAAGAAGATGCGGTCATGTTGCAAACGTATGAGG
AAAAATACATATTTTAAGAGGATTTCCTGCCGCAACGATCTGACGGTTCTGGGTGGTGAT
CTGAAGTCGGATCTTTTTTTTTTTTGAGTGGAGATATGGGATTTTATTCAGCAATAGCCC
CGGCAGAGTCTGCCAAAAGGGACGTTACAAGAAAACTAGGCTTCGAGTCAAGCCAGCATT
CTGTCACATCGCGTGTGCTAGCTTGCTTGGCACACAGATGGACAGGATTATTGGCCGCTC
TATTACAATGCTGAATACAGAAATAAGTAAAAACAACTACGTGTTCCCTTATCTCGTCTA
AGATAGACGCCACCACTGAACGAGAGTTGTGTCGCAAGTTCCATAGCTGAACTAGGTTCA
GGCTATCTGTCTCCAATATGACCTTCGAGAATCCCCTTAGCCGAGCAAAGAGAACTCCCT
CTCGCATAGCCATCGCCTCGGCTATCAAAGGATTAGTCACCCCACTGAAGGGTTTACACC
AAGCTGCAAGAAAGGTGTTGTGGGATCGAGCTACCCCACCTCCCCCTCCTCTGCAAAGTT
GTTTAGCAACACTACCATCCGTGTTTATCTTAACAATGTCCTGCTCCGGTGGTCGCCATC
CGAGTCCGGGAAGAATACGGGCATGATCCCGTGGGATATCTAACAGAGCCAGGGCATCCC
TCATCATGATCATCGACTGAATCGGACTTAGAGGACCCCGATCATGAGTGAGGTTGTTAT
GTGATGTCCAGATAGCCCACATGATCGACACCATCTTTGTCCTGTCAACATCCGAAAAAC
GCTGATCACATAAAATGTCAGTCTTCCACGACTGGGGCTGCACATGAGGACGCTGGATAT
CAAGCCAGTCCAGTGCAACATCCCAGAACTTCATCGCATGTGTGCAGTTGAGAAGTGCAT
GCATTAGCGTTTCATCAGGATCCAAGCACAACTTGCAAGCACTATCATCAGAGATATGTC
GGTGTTTGAGAACGG