Map Locations of contig_49885 (10344 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_49885

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_65197 1 2752 bp MLOC_65197.1 Available Available LOC_Os12g05120.2, FRAME:-1, EVALUE:4e-112, 13112.m00513 protein receptor kinase, putative, expressed





CDS Structure of MLOC_65197






Contig Sequence (10344 bp)

>contig_49885 10344 assembly3_WGSMorex_rbca.fasta
TGGCTTCATCAGGAGCTACCACATTGGAAGCACCACTGGAAGCACCATTGGCTTCATCAG
GAGCTACCACATTGCCCCTAGTGTTTGCACTTGGTGGTGGAAGTCTAGCCTTCAAATATT
TTTATCCAGAACTGTTGTGATCTGGCTCACCACAATATGAACAGTGCATGATCACACCAT
GTCTTGTTATTTTCTTCCCTCCCTTTCTATGGTCAACCTCTTCAGGTGCTTGTCTCCTTG
AAGTGGAAGGCTTTCCTACATGCTTCTGGTACAATGGTGGCAATATTGGGGGGCCCACAA
ATTTCCTCCCACTCTCTCCTATCTATGCAAGGATAGATAATGTTTCCATATGCCTTCTTT
AACATTTGCTTTGAGTAGCAAGGGTCTACCAGTTCAAGAGGATCAATTCTATCATTCCTA
CAGCAATGCTACCACATGAGAACATGGCACGCCTGATTTCTGGAATCTTCTACAAGTGCA
TGTTCTCTTATGCATGTCAACTATGTAATCTACCCCTCTGACACCTACTAGGAAAAGTCC
ATCACCTGAGCAATCCACATAGCATGTGTTTGCAAACTCACATGCTTTCTCAACTTGTTT
CCCAATTTTAGGGCATATATTACCTAGCCACTTGTCCGATTCAATCTGCTTGTTGTAGTG
CCTTGTCATAAGCTTCCTATAGATTCTGTCAACCATGGTAAGTGTTGACAGCTCCCTAGC
CTCCAAAATATACCTGCACTGGTTCATCTATCAACTGTGGTTGGTCTTTCCCTTTTTGCT
TTGCTTTCTCATTTGATCTCTTTTCATGTTTCTGCACTAGTTCATCTTCATCTACATTAT
CTGCATACAAATCATCATCACCATCTCACGTCTCATTGTCACAGTCCACAAGCAGACCAG
ACTCATAATCTTCATCTTCTGTATCACTTGCTACATCCTCTTCTTCGAGTGCATAGTTCA
AGTGGTTTTTCCTGTCACTCCTACTCATTTTTATGTTTCCACCTGCATTACCTTCTTGCA
CACCATCTGTTGTTCTTCATGTCTTTCATTACCCACATCTGTATGTACTGATGCCCCCTT
AACAAACTCAAACTAGTTGACATCATCATCCGCATCACAATCAGGATAGACAACTTGAAT
AGGGATAGGTGCTTCCTCTCCTCTTCCAAACTCTGCTTCTGCCTGAACTTCTCCATCTCT
GATTCTGCCTCAGCTTCTCCATGCTCTACTTCTGCCTTAACTTCTCCATGCTCTGCTTCT
ACATTCTCTGCATTGCTATGCACTCTCTTTGTTGGGCTGTAAACTTGAGGCAGACTAGCT
CCTGGATGATTCACAACATCATTCTCACTAAGGTTAGCTCTGAAGCTATCATCATGATCC
AAATAAAGACTGAAAAAGTGATGATCAATATCAAGAAACATGAGCATTCTGCCAGCCTGT
CATCATCAGTTATTGCCCCGAGACCATTTGTGCTAAGTGTAAGGATTAGGACACAATAGA
AAACCTTAAGCCTCCGTGTCATCTCATAACCTATTTCTTCCACAAGATTTTCAATCATTA
TAGGTGACGAGGTGACCCTTTCCACTTGATCATACCAAATGGCACGGCCATTCACATAAG
AACGGTTCCTACCATGGCCAAGAAAAAATCCACCATGGTTGATCTCCATCGAAAAAGTGT
TGCTTCAATGACGTGACGCAACAACAAAAGCACTACATGCATCACAATCTCTTTTTTTAA
CTCTCAAAAAGCCTAAGCCCCAATTCCCTTAACCCCCAAATTCTAACTGAAAACCATAGA
ACATCGGTCCAATCTTGCAACTACAACACATCTTAGATGAAAACGCGGCCCTAAAAGAAG
GTTCTTTGACGATCAAAATGCACAAAACTGACGAGAAGAAAGGGGGCGGATACTTATTAT
AGACAGGGGGTGGCGCCCCTTCTGCGCGATGAACAGGGGCCATCCCCGACGCCTCCCACA
AGAAGAACACGTGTGGCGGTGACGCCTATGCAACTACGGAGGACCTCTGCGCCTCAGCTT
GACTGCACCGTCGACGACCGCCGGGGGCGGCGTCGCCTATGCAGCCGCTCCCCTGTTTAA
ATCGAAGACGAAGAGGCGACGTGAGTGGAGCAGGAGTGAATGGGTGGATTCCGTGATGGC
CACGGGCTCGACGCAAAAAAACGACGGCCACGCCTCGGCGGTTAGCCACCTGGCTTGGAC
GACCGGTCAACACGTGTTCAACCACGCTGTATCCATCGTGTACGTGCTACAATGATCGTA
TTTTTTATTTCAAATCGTATTCGATGACCGTGCTACAATAATCGTATTTTTTTATTTTAA
ACCGTATTCGATGATCGTATTGAAGGTATTGCTAAGTTCAATGACCGTTTGTGTTTCTGT
CGCAATTATAATGACCACGAAAGAATTTATCTCTTAAATATGATGCAGAAATACTAGTAC
CATAGTTGTCAACGCATTAGGACGATAAACATTTCAACATTTCCATGAACGGAACCAGGA
AAATGCATTTCAACCCAGAACATCACCAAGCACAGTGAAGAATGCTAGTACGTACTAGCT
ATGAAAGTGGAGAGCTGATGGTGAACTAAAACTAGTAGCTGAGACCATCGTCCGTGGTGA
TGCCAATGGACGGCGACATCGATACATCCTCCTCCGGGAGCGGCGACTGGTCCACGGGGA
CGCTCTCGATCATCCTCACCACGTCGGCCATGGAAGGCCTCTGCTCGGGCAGCTGCGCCA
CGCACGCCAGCGCGATGTGCAGCAACGCCACCATCTCCTCCTCGATGTTCTTGTACCGGA
GCAGCTCCGCATCGAACACCTCTGCCGTCCACTCCTCCCGCACCACCGACCGCACCCACT
CCGGGAGGCTCACAGCCGCCTGCTTATCTTTCCTCTGTGCGCTGTTGCCGGCTGCGTCCG
GCAGCGGCTGCAGGTGCTGTGCCGGCACCTTGCCGGTCAGCGCCTCTAGGACGAGCACGC
CGAAGCTGTACACGTCTGCCTCCTGTGAGAGGCGCTTGTGGTCGCCCGACTGCTCCGGCG
CGATGTACCCGCCGAGGCGGGCAATGGCGTGCGCCGGGCTGAGCAGAAGCGCGAGGCCGA
AGTCTGTGACGCAGGCGGCGCCGTTCTTGTCGACCAGGACATTGGTGGACTTGATGTTGC
CGTGGGGTATGGTGGACTCGCGGTACTCCCTGTGGATGCAGGCCAGCCCGCGCGCCGCGC
CGAGCAGCAGCGTCACCCTCGTCGTCCAGTCCAACGGCGTCTCCCCTGTCATCTGGTGCC
CTGCACACATTCACCAGACAATGCCAAGAACATCGTGTCAGTCAGACACAGTTCGAATGG
AGCAAGAATATGTTGGCGATTCAACAAGGATACCGTGGAGGCGATCATGGAGGTTGCCGT
TGGGGAGGTAGTCGTAGATGAGGAGCTTCTCCTGCTTGGCGTAGTAGAAGGCCCTGAGGG
GGACGAGATTCGGATGACGGAGGCGGCCGATGAGGTCCATGTACCGGTGGAACTCGTCGC
GGGCGCAGGGGTTGGCGTCGCGCAACCGCTTCACGGCCACCATGCGGTCGTCGCCCAGCG
CCGCGCGGTACACTGTCCCGAGGCTACCACGACCGACCATCTCCGCTGACGCGCGAAGCA
GCTCCTCGAGCTCGAACTTGCTCCTCCTCCTCTGCTGTTGCGCTGTCCAGCCACCACTTG
CCCTCCGTCCGGCGCTGCTATCGCTTCCCCCGTCATCGTCAGCTTCGTCGTTGCCGCCGC
TTTCGCCGTCGACCCCGAAGAATACCAACTTGCTGCGTGCCCCGTCGCTGTCGCCGCCGT
CGCTGCACCTGCCAGCGCTGCCTGGGCGAGCTGGCTGCATGCCCTTGCCGTGGCCGAACA
TCCCGCCGTCTCCGTCTACCAGGCCCACGCGGCCGCCTCTTTTCCTCTTCGTGGCTGTCT
CGCTGCCGCCGCCGGTGCTACAGCAGCAATACGCAACCAGCAGCGACAGCAGCGCGAACA
AGAAGAGGCCATTGCCGACGGCAATCCCGACAATCGCGCCTGTGCTCAAGCCCCCCTTGC
CAGCGGCTCCCTTTGGTGTGGCCAATGCCGGTGAGGACGAAGCAACGGACGACGACGACG
AGGAGGCGGCTGGATTGGACGGCACGACGGACTGCGACGACGATGCAGGGGCGGAAAGCG
ATGTCGGGGCGGGCTCGCGCGGCATGAAAGAACAGGACGGCAGCGGAGGCATCGTCCCGC
AAAGGCCGGCATTGCCGGCGAACGAGGCGAGACCAAACTTGGCGCGCATCGCGTCGGGCA
CCCTGCCGGAGAGCTGGTTGTTGGAGGCATTGAAGTCCGCGAGGCGGGGCAGGGCGATGG
CGAGGTCCGGGAGCAGACCGGTGAGGAGGTTGTCCTGGAGCCTGAGCGTGAGGAGGTCGG
TAAGGTTGGCGAGCGTGGCGGCCGGGATGGGCCCGCGCAGGCTGTTGTCTGCTAGATCGA
GGCGGACGAGGCAGGGGAGCCGCGCGAGGGCGTCAGGGACGGCGCCGGAGATGTCGTTGC
GGGAGAGGTAGAGGAGCTTGATGTTGGGGGCGCCGAGGAGGAGGCCGTCGAGGGTGCCGT
TGAGGCGGTTCCCGCGGAGGTCGAGCACGCGGAGCTCGGTGAGGTGGGAGAGCGGGTCGA
GGGAGCCCCGCAGGTCGAGCGAGCCGAGAGAGAGCGAGGTGACCCGGCGGCCGTCGGAGG
AGCACCCAACGCCGGTCCAGCGGCCGGCGCAGGCGTCGGGCGTGCTCCAGTTGCCGGCCA
GGATGCCGTGCGCATCGGCAGCGTGACGGAACATGGCCAGCGCGTCCGTGTCGCTCGGCT
TCACCTCCGGCTCAGGCCGCGGCACCGCAGCCGCCGCCGCGGCGGAGAAAAACCCCACGA
CCGCCAAGAACCGCAGAGCCATTGTCCTCGGGCTTGGCTTGTGGCGAGGCGACGATTCTT
TACTTGGGCTAGGAGATTGGAACGGGGGGGAGAGGGAATCATCACTCACACAACGAACCA
AAGGTCCAAAGCCATGATCCCTGCCGCTCCATCAATCTGCATTGGGAGAAGAGAAGCGCC
GTGCTTTCTCCGGTGCGGCTTTTGATTTTTGAACGGGACGGACTGTGGTGTTTGAAGTCG
GAGGGGGGGAGGGAGGGAGGGAGGGGTAGTGATGTGGACTGGTGATGAGCCGTGAGGCGT
GTCAGTCCGGATGCTTCCACTTTTCGCTTTCGCTCTGTTCTTGTCTGCCCGTTGGCCCCT
ATGCCTTCCCTAGCAGCAGCAGCAGCATACAGGCCTGGGCCTTCCTTTGTCTCGTCGTAG
TAGTCCATGCAAAGTCAAAAGCTCAAAGGTAATTCAAAAGCCGTAAATCGCGTAGTAACA
GTTTAAAACACAGCTTTGTAAAATAAAATCCATAGTCCCGAATACCATGCAAAGAATTCC
ATTTCCCTAGTTAATGACAACACAAAAAGGTTGGTGTTTGCCCTGACAGAAGACGTGTGC
TTCTACATTGTCTGTAGAAATCGGGCAACCGTGCACTCATTTCCTTTCGCAGAACACCTC
ATATGACGTGCAACAACTTCTCATGTGCCTCCGGCACGACGGGAGGCAAAAGAAAAGTAT
ATATCAAAAGTCCATTTCTAAGCCGAGACTCATCTATGCCCTGCCGAGTAAAAAATTTAT
AACAAATATTAAAATAATTAAAAACTTCTAATTTTGTTTGGGTGATAAATAATTTGATGA
GTGAGGTTCACTAAATATATTGTATAATTTGAACATCTGAACAGTTCTCGATAAAAGAAA
AACAAATTGGAAGTCTCTAAAAGAGTTTACTATACATGCACCGTTTTGATCCGTTTTATC
CTTTTTGCTGAAAGCTGCTCACATGTTCAAATGTTACAAAAATTAGAGCGGACCTCACGC
ATCAAATTATCTATCACCTAATTTTTTTTTTGAATTTGTTTAATATTTGTTTTGATTTTT
TACTAAACGGGCGCAGATGAGCCTGGGCACCGAAATGTCGTACTCAGTATATATGCTCTA
CTACCTTATACTCCCTTTGTACCTAAGGAATAGTATTATGTATTCCTATTGCATATGTTG
TAGGAGTATGAAGTAAGAGCATCTACATCTTTCCAAATCCCCTCAAATGCCTAGCGGACG
AACTCGCAAGAGCAACTTCAATCGCACGGTCCAAACAGACACGTGTTTTGTTTGCCTTTT
GTTTGTTTGGGTCGACACGTGTGTCCCCTCTTGTAAATGGGTCGGATGTGCGTTTAATGC
ACCGACTCATTTTTTGTCCGGGCTTAACATTTTTCGAAGGTAAAAAAGGTCTGCGGCCAC
AGATCATTATGAGCGGACATGCGAGCGCCAAAAGTTCACGCAGGTGATATGTGAGTGGTT
GACATACATATGTCGGCGGTGCTTCCTACTTGTCGATTCGACGACGCGTTCCTTAGACAT
TAGAACCTTCTTCTTCCTGGTCGTCGTCGGTCCTTTGTGTCAGCCCTCGGCAAAGATGGG
ACCACCGAAGGCGAGGGAGGCGAGGCCGGCAGCGGCGTCGAGGGTCGATGTGTCGTCGTC
CATGGCGCACGCGCGAATGGGCGGGAGATTTTTGGGAAAATGAAGGAAAATGGCGGTGTT
GTGCCACCGACGGGCGAGGGGAAGGAGAAGGGCGGGCGTCGCACGCGTCCGCCCCCTGTC
CGCGTCGAAGCAAATTCGGCCCAAATTTGAGCCTCCAATGGGTTGTGGGCGGACAAAAAA
CGGACAAGCATCCGTTTGGATCGGCGTGTTGGGCTGTGTTTTCTGTGTGCAACGACCCAA
ACGGACACGCGCAGATGAAGTGAATTGCGCGATTGGAGTTGCTCTAAGTGACCAGTCAAA
AAACACCTGACCCATATGGGGACTGAAATGCCTCGATTGACCAGCACCCCTCGCATCTAG
CCTAAATGTGGGATAGATATGGGGTGGCCGGGGCGCGACCGGACGCGTCTACCATGTTAA
AATGACGTTGTGGTCCTAGAGGAAAAGACACGGAAACCCGACGATCCGATGGGCATCTAA
GGGTGTGAACGCCACATGGCATCCCTCCGGCTCGCGTTCTAAGGGCCGAAGTCCAATTAT
TTAAGCCGGACGACGTCATCCAAACCTAGCCACATCCACTTCCTCCCACTTCGTGGCACC
AACCCGAGCCCATCCACCTCTCTCCTTCTCCGCCTTGCTCTTCAAAAGTCGTTGTCTGCC
ACCACAATCAAATAGGCATGCCACCACAACGATGGGTCAAAAGCCACCTAATGCCAGAGC
GCCGACTTTAACTCCTTGAGCAGATCTGGGAAGCCGTGAATCCAAGATCGTCGCGGGGCT
ACCACCAGCCGCGGTGGATCCGAAAGAGGAGTTCGAGGAGGGGGAGGAGGTGGAGCAGGA
GGAGGACACAAATCTACGGACGAAGCAACACGCTATCATCAATTCCCTCTAGTCGAAAGC
GGAGGTGGAGGCCAACCGCCATATCATCGAGGCGAAGGAGCTGGAGCCCTCCTATGCGCA
TGTCTACGTGGTATCCGACATGGAAATAGTGGACATATCTCACGAGGACGATACATAGTT
TAGGCTAGTATGCTTTGCATAGTACGTAGCATTTTTTAAATTTGTTGTATGGATCTAGGG
GACAAAATATAAGGGCATTTCTAACCAAACCCTATCCATCCTTAGAGTAAAAAGTCGGTT
TTACTCTTCTAAGACCCACCTACCCGAACCGCAATCGACCGTAGAAGAGGAAAAATCATC
CTTCAGCCCGCATCGCCCACCTATATTTACTCCGTCGAATGGCGATGGAGTAAAAAATCT
ACTCACTCTGTCTTTTCATCTTTCGCCTCCCCCCACCCCCGCGGACGCCTCCCCTCGTTG
TTCCCCGCCGCCCCCTCTCCTCCCGATGACCACATGCGGTGGCCGGAGGTCCCTGCCATC
GACCCCCCGCCCTCACACGTGTCTTCTGTAGGATTCGGATCCTCCTTTAGCAGTTATGGA
TGCGATGATGCCAGCCCTCCGCCTCTCTCATGTTTCACCGATCTCCCCGCACCGCAACAG
TCGTAGAGGCGGTCCCATTAGCTTGGGTCGTTCCACATGGCTGAACTCACATCGCTCAAG
TATGACCGATGGGATGTCCGTTTCCACGGCTCGCTGACGCACCTCAACATCCCATGAGGA
CGGCGCAGGTTGAGCTCCATCCCCCGCCGTCGGGAACGATGAGGGCGTCTATGGCCAGGG
AGGCGACCTCATGGCGGAGGCCGCCGACGACGAGTGCATGGCGGATCTCCGCCGCCAGTG
CCCCGATTTTGTGCACACAGAGCAGAAGCGATCTGCCGACGAGGCGGCGGACTGCAAGGT
CATCATCCTGTTCGACGACGAGGAGTATATTAAATTAATCTTCCTCGACTGCGATGATGA
TGGCAAATGGCTGGACCCCAAGATCGATGGTATGACACGGGGTCACGTACATTAGGGGTA
GGCCTACGGATCTATTTCCCAATGCCCACCTAAGGCCCCGTACTGACATGAGTGTCCTAC
AACTCATTATTGTAGTCATGACCTCACTCGATATAACGTGTCCTCACTCAGCTTACATAA
GGTCACTCGAATCACCTTGTGTCAATAAAAAACGTCCTAATACTTGGACGACAACAAGGC
GATGGCACCGAACAAGCTGCAATGGCTAAGGACTTAAACTATCACTTGAAGTGTAGTGAA
GCCCTGCATTACGGGTAACGCAGTAGTTATAGCTGCCATTTCTAGTAACCCCCGTAGTTA
TTAGCATTAATTCAACTTGTAATGAAGCTCGGTCGGCTGTGGCGCACTCTATATAAGCCA
CTCCCGGGATCATGCTTAATGGTTCAGCAGCTTGTAATAGCAGATACCCTATAAGAAAAC
ATCAGCCACACGGCTCGAGACATAGGGTTGTTACCACTCCCAAGTGGGGCCCAAACTCGT
ACATCCGAGTGTATCCACTGCGCTTAGTTAGGCTTCGCCCCTCTGTTCGTACCCCTGGTA
CTATTTTCAGGGTCATTCCCACGACAGTTGACGCCCACCTTGGGGCTGCGCATCCAGCAA
ATCCGGCACAGTTGGAGTATTTACCTTTTCTGTCAACATGATGACGCTCAGCGGAGAGAT
CCTCTTCGTCTCCCTCAGCTTCGTCATCGACGACTCAACATGGCTGCCGGATGCGCCACT
AGACAACGACGCCCTCCCTGCTCGAGGTACATCGCATTTTAGCACAGTTCCGCACGGAGT
CATGATCCGACAACCATTAGTGCAATACCAGTTGGTGCCCCCACGCCCGCTATAGTTCGT
CGCAAGCGCTCCGAGCGCTCGCGGTTGCAGCGGTGGATCAAGCACGCCATGGACCACCAG
GCCGTCTCGGGGCAGATGGCTATGCCTAGTTCCGATGAGCCCACCATCAGCCTTTTTCCT
CCATCAAGCGAAGAATCACTCGACGACTCTGACTGCGGAAGCAGTGGAGATGCCGCTGAG
GTCTTGATGGCCGAGACAACCAGGGGAGGCAGCCCCTGTTTCGTCACGGAGAATTCTCCT
GGGTGTGATGGTGAAGATCGTCGCCACGGCGACCACGTACCATAGCCGCTCACACAGCAA
CAGCGGAAGGAACTCTGGTGGAGGAGCGAAAAGGCTCTTCGCACTCCCATCATCGGGAAC
ACCCTGGAAAAGATCATGCTAGAGAACGCACGCCTAGCCAATCTGGCCGAGCGCGAGCAA
CTCGAGCGACTCCAGCAGTCACTCGAGGCTCGTGCCGCGAGGGACCAGCCATGTTCCAGT
CGCAACCGTCGGTAGTTGTTTTCGAACGACCGCCCGCGGCACATCGAGGTGATGCAGACG
CCTTTGTTGAACCTGGCCGCTGCCACTCGGATGGCTAATTCCATTCAGCCGAGTGACACT
GCGGTCGGGGAATGCATTTGGCAGGTCCAAGCTCTGTTGAAGACTCCCATGCACCAGAAT
TCCGTGGTGTTGCAATCGTGGCATCACATTCACAGGAGGTCCGTCCAGGCGGACACAATG
CAGTAGGCTCATAGCTCGCACGCGCTGGGAAGACGCCAAAGGTCTCCTCCTCTACCGAGA
GCCGGGATCATCACGTCTGAAGCAGAACACCTCCTCCGAGGAGCGGTTCACTCGGTCGCC
GACCCCATGACCGCAGGCCAAGCCCCAATCGACATTGGGGTAATGGGGACGACGGCTATG
GGACCCCTCAGTACAATGCAAGGTCTATAATCACACAGAACATGGTTGACCGGTCGTGAG
TGTTGGGGAATATTGCATGGGAAA