morexGenes - Barley RNA-seq Database

Contig contig_49840
Source Contig contig_49840
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_49840 (10470 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_49840

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_65166	3	1263 bp	MLOC_65166.2	Available	Available	LOC_Os07g47620.1, FRAME:+2, EVALUE:2e-73, 13107.m05077 protein universal stress protein domain containing protein, putative, expressed
MLOC_65167	2	519 bp	MLOC_65167.2	Available	Available	None
MLOC_65165	3	2085 bp	MLOC_65165.1	Available	Available	LOC_Os07g35050.1, FRAME:+1, EVALUE:4e-61, 13107.m03580 protein OsFBX237 - F-box domain containing protein, expressed
CDS Structure of MLOC_65166

CDS Structure of MLOC_65167

CDS Structure of MLOC_65165

Contig Sequence (10470 bp)

>contig_49840 10470 assembly3_WGSMorex_rbca.fasta
TGCGTCGCGCGCCGCCGCCGATTGGATCTGGCGAGCGCGCCGTCTGCTGCCGCCATGCCT
CCTTGCCTCGGAAAACGTAGGGTCTTATTCATAAAAGTGAAACATTTTCCTCATTTAAGA
AAGGATTGCGGGTTGATTAACTGAAAACGAATGAGCCTTTTTGCAAAAATGACACGTCGG
ACGAAGCCTTATTTGATTTAGGGGTTGTTTGGTTCCCAGCCTAAGGTTGCCACGACTAAC
CTTAGTCATGCCACAATACCTTAGGCATATGTTTGGTTCATTGCCACACTTGTGGCTTGC
CACACTTTTCTAGTTATATGGTCCACATGTCATACACTTATTTTTTTGTCAAATCTTGTC
ACACTTGTGGTATTCATTTTGTTAGTAACACTTTTTGTGGAAGCCACACTTTACCTAAGG
TTAATTGTGGCAAAGTTAGTCATGAACCAAACATGTCCTTATTATTAGGTAGAGATTTTT
GCACCGGCAGTAAAAAAAGGTGGGGGCTGTTGGGAGGACGGTGGATTATGTGGGTCGGTC
TAATTTCGGCCGAAGCCCGTAGAGCGTCTCCTCTCTTCTCCTTGTGCGACGCACAAACGG
CCTTCTCTTCACACAGGACGAACAAGAACCCTAATCCCCAAATCCTCCACCTCTCTCAAA
TCTTGAGACCTGGTCCCTAAATCGGACCATCGATTGACTATGCGGCAGCTCGTCTTGAGA
TCCTGTCGATCCCGGGTGCGGCGGGGCAGCGACGGCGGTCTGGAAGCTCGCCGCGGCAGG
ACAGGACAAGCGGGGGTTGAGCAGCAGCGTCTGGCTTACTAGGTACGACATCAAAACTGT
TTAGCGGTGGTCTCATTTCTTCGTTTCCAGTAGTTTTCCTCTAGCCTTAGGATCCGTGTG
GAAGTTACAGGTGTATAGTCACAGTCACAGAAATGCTAGTCAAGTGTTTCAGTAAAACTC
TGAAATGATTCTCGTCAAACACAAAAAAGTGTACAAGGAGCCTGTAAAATTCTAGTAACA
ACGTATACACCTATCGAAAAGACGGTGTATCTGCAGATGTGACGACTAGTGGCTCGGACG
GAACCATCAGCCTCACCATCCTTAAGAGTCATGAAAGTTTAGTATAATAGTCCAATTAGT
TGGCTGGACTTCATTTTTGAACTTGCACTTAATGGGGCGTTTGTAGAACAAAGATGTCAC
AATGTTAATGCATGGTGGTCTAGTTTGGTTGCTGCGCTGGAGCGATTTGGTTGAGCCTCA
ACTATCCGTCTTTGGTTGCTACACTGAGATGGCGCCTCGCTAAGGCACGTCCACCTTGCA
GCCCACCGTGCCTGCCGCTGCATCCTCCAGGCGGTCGTTGGTGAGAACAAAGGAATAAGC
GAAAATGAAAGACAGCCTTTACGTTTGGGCTTTCCAAAGCTGTCCCCGCGCATGGTTTGC
AACCAAACGCCTCCATCTTCCTTATGTCTGAGCAGGCAAGCAAACCGTGTTGACCAGGCA
CCATTTCTCATCAGGCAACTTATCCAGGGCAGCAACCAAACTAGCCCGTTGTTATATGTG
TAGGTTGTTACAAATCTTTTTCGTTTGCCTGGTTCTGTTTATAGGATGCTAGCTGTTCCA
TGCACTAAGTTTCAAATAGTATTAGCAAACTTGTTACACGTTGCTGTCAACAGCTTGTCC
TATTTTGATTTTATTCTTATTGTTATCTGGCATTTTATTCAACTATCTGAGCCACTGTAA
CTACTCTTCCCTGCTGCCAGCCACAGAACCGCCGTTGAAAGCCACTTCCATCGGTGCCGC
TCCCCGCTTTAGTAGACTGGTAGGCCTCTTCTGCCTCCATGCTCTTCCTTCCATCCTTTC
ATTCTGTCATGAACTGATATTTGATCTGATTATTTCCGCTTTCCTTCACAACTTGTCAGA
ATGGCTTGCACACTGATGAACCACTCCAAGAATGGGGCAACCTCCACTGCTGACCTTACA
GATGACCTTATCATTGAGATTCTGTCCCTGCTGCCCGTCAAGTCAGTCTGCCGATTCAAG
TGTGTCTCCCGGCTCTGGTACCACCTCATCTCCCAACACCGCAAGAAGCTGCCCCAGACC
ATCTCCGGCTTTTTCTACCCCAAGGACAATTTTCAACGCCTATGATGGTTCGATAGCATT
TCCCACTTTTGATGGTATTTCGGGGGACCAAAAACAGCTATTCCCTGATTCCTCGTTGCC
CTTCTTGACGGGGTACAAGCAGATTTTGCCAAACGACTGCTGCAATGGTCTTATTTTCTG
CATCTGCTGGAAGGACTCCCCAATAGGCGAAGCCGATTATGTGGTATGCAATCCTGCCAC
CGAGGAATGGGTAGTCCTGCCTGATGCTGGTTATGAAAGTGGTGCATTGGCATACCGTTT
GGGTTCAGATGCAGCCCTGTCACCCCACTTCCATGTGTTCCAGATCCTAGGGGGTGATGA
GGACTATGGATATATCTCAGGAGTTAGTATCTACTCATCAAAGACAGGAGCCTGGAGCTA
CAAGGAAAATGGTTGGGGCGACAATGAGATTCAGTAGGTGACATGAGAGGTGTCTTTTTT
AATGGAATGATGCACTTGCTCACCTGCGAGTTTAAGATACTTGCAGTTGACACCGAGGGT
AAGACATGGAGGACCATTTCTTTGCTGGAAAGTATGTGTATGAGAAACTTTTCTTTAGGT
CCTCTTGCTTTTATTGGTCAATCTCAAGGGCGGTTGTACTTTATAAATATGAGCGACAAC
GAGAGCTCCAAATTATCAGTCTGGATTCTTGAGGACTATAATAGTAATGAATGGATCTGT
AAGTACAGCATCAGCACTTCACAACTTTTTGCGGAGATTTCTGGGGAGAAGAATCTCACG
TTACAACGAGACTATGCTGATCTCATGTTGCAAAGGGACTATGCTTTGATCGCAATCCAT
CCTGAATGCAATATGTTATTCTTTGTTTGGAGGTGCGAGGATGTTCTACTGTCATATGAC
ATAGACCGTGGTAAAGCTTGTGTTATCTGCAGCCTAAAAGATCATTCATTTGCTCCATAT
CTTCCCTATGTTCCATCTTTCTCACGCATTGGCAGACCAAGAGCGGAAGCATGACTCCAG
GGTGGAGGCTGACAGTTGTTACCGACAATTATATGTTATCTTTTACAAGTGGAGGACCTT
CAGTTATCACAACTACCATAGGGCTACAGCTTGGTTAGCTCTGTATGACTTTTCTTTTTC
CCTCTGCAGTTTTGCTTTTGCTTTTATTTAGTCCTGATATATCTATGAAATGAAATGCTT
TCAGTCATTAAGACCCTGTAACTTGACTTCATTTTGATTATTTACTAAGTCTGCTTGTTT
TGGACTAGCCTGATTACATGTGCTAGTCATTGGTTTCTTGCCTGCTCATTTCTCCTTCTC
CGGCATTTCATATCTTCTCCATGAGTTAGATGTATCCTTAAGAAATAAAAATAAAAAATG
TTAGAATGAATCGTTGCTATCTCATGCTAATAAAGACAAGGTAACTTATACTGATTTTTT
TTTTGGGAAATTGAAGCACAGTATGCATTGAGTTAAAATATATGCATTAATGGATCCCTC
TACAATCTATCGGCAACCCATGGAGGCCACCATGGGCGGAGCTACACTAGGAAATGGGTG
TACAAATGCACACCCATTAATTTTGGTTTTCACTCTAAGAAGATGTATATACAAGCTTAA
CAAGAGTATTTTGCATATATTACTCCGTTCTAATTAACTAAAATAACATTGACCGTGAGT
TATGTACACCCATTTTTGTGAACCTGGCTCCGCCACTCAGGCCATTAATGTGACTCGTGG
TTTATGGGAGACGGTGTGATGCCTTCATTAAATGTGCTTCTTATACGTGAATCCTGGACG
AAATTGCTATGTCCATATTTCCCATATATGTTGACTGCCACTTATATCAAACTTTTTTTT
AACTCTACTTATATCAATCTTGGTAGAGACAACTTGAAGCAGCGTTACCTTTGTGAGTTT
TTGCCTGACCTAAATGGTGTCCTTGTAAGGCCAGGAGCTTATGCTTCCGTTTTTGGAAAA
TCAAATGAATTTCTGTAAAAGAAAAATTGTGGGACTAGTACTTAAGATTCTTATGTTTTA
CCTGTACGCTTGAACTTGCATGTTGGCCCATGCATAGGCAAGAAGTTTTGCATCTGTAGC
TGAAACAACTTTAAAACAAGCAAATCCCTGCGGTCATTTTTAGTGTGCATATAAGTTTTG
GCTGAAGTCAAAGTATCTCTAACTTGATCAAAGTTATAAAAAAAGTATCGACATTCACAA
TACCAAATCACTATCATTAGATTTATTATGGAATGTAGTTTCATATTGTATAACATACAT
ACTTGGCATTGTAATCGTTGATAATTTTTAATATTAAGTTTGGTCAAATTTTGCTATGTT
TGATTTGACACAAATCTTATACGTGGAGTAAAAATGAACGGAACGAGGGAGCACGCAGCT
ACTAACACTGAGAAGCGAAGCTGTTGTTTTGGTGTTATATGCATAATATCAGTATATGGA
TCCATCCAAATTCCACAAAAGTCCGAAGTGGAAGTTCTTTGGAAATGTCGTATGGACATT
TCCACTACAAATCTATTTTTTCTTTCTATAAAGGCATTGCACACCTGTGGGTGCTGCATG
CGGCAAAATTTCGTGTTTTGATACTTTTTTAGAAGTTGATCCAGATCTGTTCCTAGTTTG
TAAAAATTTCAGGAACCAACCTTTTTCCTACCGCTACGGACCCTAGCTCGAGCACTTGGC
GCGGACAATGTATGCTGCTGCTTGTAACCTTTGTTTCTGATTACTGACCACTGCAATAAT
CGGAAACAGTGTTGCTGAATACTGAAAAAGAGCCGGGAGCATGTGAGTTCGGGATCAAAA
GAGGGCGTGTACCCAGAGTTTTTAAGCTCGGGATCAAATGAGCTTTGTGAACACTAAATC
CTGAGAAATAGAATAAAGTAAAAATAAATCAAAATTTTCTGAAATATTCCTGGGGCAAAC
ATTGACAAAAGTTTTCAGCGCTTTCAAAAACTCAAGAAAGAATCATATTCGTGAAAGCCG
TGGCAAAAATAAAATAAAGCTGATGCTTCAAAAATGTTATTTTCGAAAGTATTTTGAAGC
GCTGATTTATTTTTATTTTTGTCACGAATTTCATGAATGTGATTTCATGCAAGCACTTCA
AAATTTGTCGAAGGCCATCATACAAAAAGAATAGTTTTTGTTCTGTTTTCATTTTCGTGT
GATTTTACTGTTCGCCGCATACTCAAATGAGCTCTCGAGGAGAACGGAGAACATGGCTTT
CGCCACGTAGTCTTCTTCGGTGTACAACTTAAAGTAAAGCGAGTGCGTGCTCCTGTGTTC
AAAAGAATAAAATAAGCGTATGTTTGCTGACCAGACCAGTAGTATTATCTTTACTACGCT
TTGACGAACCACAGGTTTCGGGAGCAGAAACTGAACAACTAACGATCAGCGTGAACTGGC
TGAATGACTGTACTATAACACTATCAGTCGTTATCCTCCTCCAGGACGGAAGTTGCAAAG
CCGGTGCTGAAACCAACAGCGCGACGAAAACCGGGGCACCCCTGCCGGCGCCGCCGCCGC
CGCCAGTATCCATCGTCATCCACCCTTGGCCCGCCGCCTCCACTCCCTCCGGCTTTGGCC
GCCGGTCTGCCATATATACGCCCCTCAGATCTCGCCGCTCATCACCTCATACACAGCAAA
CCTGCCAGCCAAAACCAAGAACGTACATCCCAGGCCAGTGCCCCTTGCAATGGCGGAGAG
CAAGATTGCTGCACCTGCCGCGGCGGAGGCGGAGGATGGCAGTAGGAAGAAGACGGTGGT
GCTGGTGGCCGTGGACGACAGCGACCACAGCTACCGCGCGCTGGAGTGGGCCGTGCGGCA
CGTGGCGACGACCGGCGCGGCTGCCGAGCTCGTCGTCGTCCACGCCAAGCCGCCCGCGTC
CTCCGTCGTCAGCTTCGGCAGCCCCGGTGCCGGCCGTGAACCCCGTTGATTTCCAGCTTG
GTTTCCGTCTCTCGGTTCGGAGTTTGCGCCGGAGCTGACTCGATCTGCCTCGGAATTTTC
AGCCGCCGCCGGGGACCTGGTGAGGGTGGTGGACGCGGACCTGCGGAAGCGGGCCGAGGA
CGTCGTCGACAGGGCGCGCCGCCTCTGCGTCGCCAACTCGGTAACAGCCACCGGCCCACC
GCCCGTTCGCCGCATTTGCAGAGAAATTCAGCAGTGAGATCACAAATGCATTGTTGTGAG
TTGTGACGCAGGTGCATGCTCTGATAGAGGTGATCGAAGGGGAGCCGAGGCACGTGCTCT
GCAGCGCCGTCGACAAGCACCACGCCGACCTGCTCGCCGTCGGCAGCCACGGCTACGGCG
CCATCAAGAGGTAATTGGCGGTTTGTCCTTCGTGCTGCTGGCTGGCTAATGGCCGTGGGT
TTCATCTGAACCAGCTTGACGCTTGTTGCAGGGCGTTTCTTGGGAGCGTGAGCGACTACT
GCGCCCACCACGCGCACTGCTCCGTCATGATAGTCAAGCAGCCCAAGTCCAAGAACTGAT
CGCCGTTTCCGGTCGCATCACCATTGCGTGCCGAGCTTTGCTGTATCCCTTTGTGATTTC
CTAGAGTTTTGCGCACATGACTATGTCTCTGCATGCACATGTGTATGCGTGTAAACAGTG
TGGCGAAATTTGAAGCACCACGTACGAGCTTACATTTCCAGCATCGCAAGCGACAATGTT
ACTGATTTTCAAATGTGTTTCAAGTCGACGAATACAGATAATCCAAGTAAACGCTCGCCA
TGACGGAGGCACGTAGATTTCAAGAATCGCCCAAATAAGTTTTACAGAAACATCACGAAG
GGACCTAGAATAACTGAGCACATGGATAATACTAGAACAGCGGATGCAGATGTTAGCGGA
AGATGAATATGAAGCATTTGGGACACGTTTGGTTATCTGCATCATTTTTAAACACTTTGC
ATACTTATCTCAGTTAAGCCTGATTGAGCAAATGCAGACATTTTTTTTTAATATATGCAT
GTTGATTGGTTGTCTGCATTTTCTTTAGTCTGCATGTGTCGAAAGAAAAGGCATGTTGTT
TGGTTGCGGGCTTGTTTTCATGAAAACGCAAATCAGGTTGTTTGATTATATTAAGGACAA
TTGTGTGGTAACCTCCTCGTCGGTATGATGAGATTATGATAGACACATATAGATAGGTAA
CAACAAACTAGAGCATGTAGAACAAATAAAGGCACACATAATATAGTTTTAATCACGCAT
TAGAACATGTTCAACATAGCAGGATAAGTTCTAAACCAAACCACACCATATAATATAGCC
TTAAACAAAACCCGACAACATGACATTCTACATAGTCACAACAAAGGCTTCGTCATACTT
CTTTCACTTGGTGACCACCTTCACGACGTTGTTGTTGAAAACGATCGCCTTCAGGGTGTC
GGGATTCAGCAACATGAAGGTCGACATGTACATGATCATGATGCAAACGAGGCCCTACCT
TGATCAAGAGTGGACCTATTATCGACCACTCGGACCGCGACCCTCCATGCGTAGCCGGTG
TTGATCTTCACCCTGAACTTCGAAGGGACGACGGGAAAGTGTTTCGTGAAGTCTAGAGGC
AATTGCAGGAAAGTGGGTTCGCCCTGGCTCCTAGTACTAGTGCTCGTAGTTCCTCCTCTT
GCTATTGGGGGACTCCCACACCACCATGTCGTCCTCCAACGACGGCACGACCTCCTGGCC
CTCGTCCAATGGCGGCACGACCTCCTTGCCATTATCCAATGACGACACAACCTCTGTGTC
GATCCGCTGTAAGAACAACACGAAGTCCAAAGATCAGCATCCCTTCCTATCAACTTATCG
CTCATATATTTACCCACCCTACTTACCCACCATCGCGGTCAAATGCTCTCTTCCACCTCT
CTGTTTCACCACCTCTCCATCGCCATGAACCCCATCCCAACCCCTTCCCCTGGCCATTGG
ATGGAGGGCTTCTTCCTTGGTTGCTCGCTTGGTGACTACACCAAGTTCGAGAATACCATG
GAAGTGTGCTCGAAATTCAGCAACATCGAAGACATGCACAAGGAGGCACACGATGTGGTA
AAGAAGGCTATGGCGGAGGAGTTGAAGATACTAGTTCCTGACCCATCATGGGGTGCTATG
TCAGTGGACTTTGGCGATGCTCGACAGAGGGCAAGATAGGCCAAGTACATGGAGTACATG
GCTCCTGAACACCAGCGTCCCGCATCATTCTCGACTAGGACGTTGGTGTCACCGGAGGAC
GGCTATGATACGATGCAGATGGTGGTCAAGGTGCCGACGGCAGGAGACCGCACAAGACCC
ATCGTTCTTGACGAAGAGGATGAGGACGAGCTTGTGGCTAGTACGGTGGATGCGATTGAC
GAAGAAAAGAAGATGACTATGGGGCCTCGCTGCTCGAAGCACTTCCAAGGTCGTCGTGGC
TAGGATTAGGTGCTTGTAACCTAGTTTTATCTCAATCCCCACCCCGATGTTATCAAAAAA
GGACAGTAGGCGCACTAGAATCCATGGTGAAGAACCGATGGATTCTATGGTTCATCGGTC
GTGTTTCCCCTAAACCAATCCCCCACCCCTGATGTGTTCAATCTCCTCCCTAATGCTCCA
ATCATGTCTGCAAGTCAAATCCACCGCAACAAGAAAACAGTAAATCGAGAGATTGGTAAG
GGTGTACCACCATTGGCAATGCGTTTGTCAATCTGATGCTCGCCGCCACCTAGGATTGTC
TTGCAGTCGGTCGCTCCCGTGCTCATCGCCGTCGATGTGAGTGGGAAGAGACGAGAGAGA
ACGGCAAGGGAAGGAAGGGTAATTTATGATGCGTTCTCGGTAAACAATGTGACGTCTTGA
GACCGCATCCAGCATGAAACCACCCACGCCCACGTTGATCATAGGCATCGACCGCAACAT
CATCGAGAGTCTTGGCCGCATCCTGATCAGCCTGGGAAGCATCAGGAGCCAGAACAGGCG
GCTCCAGCAGGGTAGGAGCCACGGGAGCAACAGGGCATGGCGGACAGGAGAGCTCACCAG
AGAGAACGCCCCACAGCACAAGACTGCGCATGTGGATACGTATGAAGCCCACAAACTCAA
CGTAGTTGGTACCATCGAAGATCATCGAGCACCAATGAACAACGACATAGCTTGAAGAAG
ACATGCTAATCTCTCTCCCTCTCTCCCTCCCTCTTTTTTTGCACAAAGGCAACCCGATCT
GGATCAGCCCCGAGCACACCAGCGGCCAACCAAGGCGGCAGCCGGCGACCCACGAGGCAC
GCACCAGCGGTCAGGCTTAGCAGGGAGCATGCCGGACAACACCGGCGGCCGGGCTAGCAC
GCAACAGCCGCAGGCCGAAATGGCAGCTGCAAAAGCAGCAACCACGGCGTTGGGCGAGGA
AGGCAGCGCGAGCCATCGGGCGAGGAGCAGCCGACGGCGGTGGATCCGAGCGGGGTCGGG
CGAGGAGCAGCTAGCGGCAGCGGATTCCAAGCGGGGCCGAGCTTGGTGTGGTTGATGACG
ACAAATCCGGTCGGCGTCGGGCAAGAAGGGGGCGGCAACAAAAACCACGGCAATCGGAGG
AGGAGAGGACGGTCGGAGTGGTTAGGGGTGGTGGCGGGACGGCCGGAGCAGCTAGCCGGC
GGCTGTTACAGTGGAGGGGGGAGCACGGAGCTGCAGCGTGTGGAAGAAGAACCTAAGCAT
CCGATATCATGTTAGGAATGAACAACTAACTTCACAAGTGGTCAAGGGTCAGTATATATA
CATGTAGTAAAGGCAAAAAAAACCTTATACAATAAGGATATAATGAAAAGGGACTATACA
CATCTAACAAATATCTGATGGCTTTTATTTTTTACCATTATGTGTGATGGCTCTTGATTG
TTGACTGGGTTTGTTACATATGCAAAAGGTCGAGGCGAATTGTTCAAAAATGCCGATTTT
ATTCCAAGAAAAGCTCTGAGCTGCTTGGGAACTGATGATACATTTCTTTTGAACTGGGCA
TGGATAGAGTCAGACACATGTATCAGTTATATATTCATAAAGAGCAGGCCACTCATTTGT
CAGTCTGAACAATTGCCAGAGTGAGCAGAGGACTGAAACCCAATCAGGAACAAAGATCAG
GTGACATGCACGTTTGCATGTCACCGTGTGTCTTACGGCTTAAATTTAGATTTTAACATT
ATGAAAAAAAATTAAAAAAATCATGCATGTTCACAACGCATATTAAGATAACCCTTAAAA
AATTCAGATCAAAATTTGAAATATACATCGAGAAATAAAAAAGAAAATTCTGTCATGAAT
AGTTCACGAATGGTTCTCTGTAGACTATTCACATCTGAGTTTCTCTTTTTTGTTTCTCGA
TGTATGTTTCGAATTTTGATTTGAATTTTT