morexGenes - Barley RNA-seq Database

Contig contig_49824
Source Contig contig_49824
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_49824 (9220 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_49824

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_65151	1	234 bp	MLOC_65151.1	Not available	Available	None
MLOC_65152	7	2110 bp	AK364677	Not available	Available	None
MLOC_65153	1	1429 bp	AK375675	Available	Available	None
CDS Structure of MLOC_65151

CDS Structure of MLOC_65152

CDS Structure of MLOC_65153

Contig Sequence (9220 bp)

>contig_49824 9220 assembly3_WGSMorex_rbca.fasta
GGGGGGGAGGTAGACGCGCGCGCGGGCGGGGCCGGAGTGGACGTCCTTGGAGACGACGCC
GGTGAGCGGGTCGGTGCCGGCGGGCGCGATGGCGTCGCCGCCCGGGCGGTGCACGCGGCC
GCTCTTGTACTGGCAGATGTAGGGCGGGAAGTCGAAGGCGATCTCGGAGTCGGGATCCAT
GGCGCAGCGGTTGGTGGCGGCAGGGGGAGCGGTGGGGGTGGGAGGTTGAAGTGCGCTGGC
CACCTACAACAACAAATGGAGGTGGACTTTAGTACTACTGTCTGCACGCCATCCGTCGCA
ACAAACGCCCAGTCAACTCGCACCAACCACAGCGAGGACCCACGCGCCAGCCAACCAACA
AACCAAACATGTGAGCGTGATTGTTGCACGACGGCACATCCCTGATTTTCGTTCCCCGCG
GCCACGGCCGGATTCTAATTAGTGTTTCTGCAAGCGATCACTACTGTGATAGTTTGCGAT
GCTAATTTTAGGCCTTGTTTGTTCGGGCTTCAGCGTCGGCAGAATCAGCTGCGGATCTGT
TGCGGCTGGCAAAACCGATTCACAGAATCAGCTTCAGCGCTGAAGCAACACCGGACACAT
GCTTCAGCCCAACACGCTAAAAATAGATCCATTCAGATTTCGGCTGATTTTTTCAAAGCT
GGTTCGAAAATAGTACTCCCTCCGTAAACTAATATAAAAGTGTTTAGATCACTATTTTAG
TGTTCTAAACACTTTTATATTAGTTTACAGAGGGGGGTAGCTGTTTGTTTCAGACTCAGA
TTCTTTTTGCTTCTTTCAAAACTGAACCCTGCCCCTAAATCTGGATCAGACATCGCCTAA
CTTTTTTCTTTAAGGCACCGTGCTGCTGTTAGAGCAGCTAACAGCCTACAACAACTATAC
AAATACGAGTACAGCACACCTGATTTTGGCTGATTTTTTGGGTTATAATGTGAGCGTAGG
CGCAGCCAGGTGTGGATTTCCATTCCCCCTTTGGGCATCTTCAGCTTAGGAAATGCTAAA
CATGTGGAAATCGATATGAAAACACACACACACACACACACACAAATTAGGAGCAACGTA
CTTTTATTCAAAATCCGCATGTTCAGAAGTTAGGTGCAACGTACACTCGGAATTGAAAAT
TTGTACATAAAACCGACACCGAATACATCATCCAGCTCGCTCAGTTCATGAATTAGCAGG
TCCCCTTTACCATCAGGAGCTTGCAATTATGTTACTTACTGCATCCTGCAGAGACGCAAG
CGAATCGACAGCGCCCTTTGCGAACCAACTGATTCCAACCTTCACCCGGTGCTCATCCGT
GGGCATCCTGAGGCAGTACACGAGCTTCCGAGCTGCACAACCAGGTCAAAAAATGTACTC
TTACCCGAAAAGTTATTAACCTAAGAAAAGGTGGGGGGGGAAACAGGCCCGCAAGGGTCC
GTAGAACATACCAGCATGCCCTATAGGCCCTTCCAAGGTTAGTCCCTCGATGAAATTCGC
TGTTATCACAGCGTCGTTTCTACCAAGCGTCATCATCTCACCAAGGTTTTGAAACCTGGA
AAATACACGGAATGTTTCGACTCAGCTCGTTATGCAAGTTTACTCTTCCCGCTAAAATGA
CCAAACGTCGGCAAGCACAAAAAAGTAATGGAATGTTTGGTCTATCGAAATGAAGAACAA
AGCCGCCGCTAGATTTGAACCTGAACGGCAAAAGGGGCCGGTCGTTGATTGCCGCCCAGA
GATTCCATCCAGCGAAATCTGCTTGCTGGAAAGCAACCTGGGAGATAAAAAGGGTCATCA
TCAGTAATGTTAAACTGCCAATGCAGCAGCATGACAGATTCAATCCAGTAGATGCCTTAC
CTGTGCGTTGGCTGGGAGAAATTTTCCTGATGGGTCTCTTAGAGCTGCTGAATCACCAAT
TGCAAATGTTCGGGGGTGGCCCTTTACTTGAAGGGTTTCCTCTGTCTCCACTTGCCCCCG
GCCATTCAGAGGAATAACATATGGTGCATCGGGAGGTTGTAACCGAAGGATCTGAGATTG
TGAACCCACTGTCCATAATACCAGATCAGCCTCCAGAACCTGGCTCTGGAGGCCTCTTTG
AGCAGCTTGAAGTTCCAAAACTAGTTTCTTATCGTCACCACCAGCTTCTTTTGCATCTGC
AACCATGCCACCTGAATCCTCAGATGCATAAACCTCTCTGATGCAGTTCACCGAATATCC
CAAGAAAAGTTGAATATTTTGAGACTCGAGAACCTGGTAGGAAATGCAACCAAACCAGAA
TTAGCTACTACTGCGTTAGATAGGATTCCCTCACATTTGGAGTTCAGCAAAGAAATTATG
AAAACAATAGGCATCGAGGACCAGCACAATGTTAATAAAATAAGCAGCCTGCACTTCTCT
ATTTTGTACTGCCTCCGTCCTGGTTTACTAGTCCCCCCTCGTATTTCTGGGCCATATTTT
GACCATGATTTTAATTAATATAAAATATATGTTATACATAGCAAAAATGATATCATTGGA
AACTACATTCAAATACGAATCTAACAATATAATTTTCTGTGACATGCATTAACATTTTGC
TAGTCAGATATGTGGTCAAACTTTGATTCAAAATACGATGAAGACTAGTAAACCAGGACG
GAGGTAGCATTCTATGTAGTCCATAAATGAACAGTTTGGTGACAGATTAGTAAGTGGTTG
CCTGGTTGATATTTATCAAGTTAGTGCTGTTGCATTAAAGCTGCAATAGTCTTTCAGAAA
GAACATAGCGGGGAAGAAGTCTTACATAGCACAGGCAGCGTCTTATGTTCTTATTAACTT
CAGATTACAGTCTTAAGATTACTAGTGGCACCAAAAACCAAAGTGGGGAACAAAAGCTTC
TTAATCTTCTGTTATAATTTCCTGAGATGATCTGATGAAGCTAATCAGAACAGTATGTAA
TGTGTAGGTAATCACCTTCAGAGCAGCTTCACGATTTCCTGGTGGTGCATTAGGACAGAT
GGTTGTTTGAAAATTGATTGCTTTGACAGTCCCCGTGCTCTTTAATCTCTCAGAGATAGT
AGCAGCTAGCTCAACACCAGAGTAACCCATTCCCACGACGGCCACCTGAATAGATGGGGA
GTTCTTACCAAACCTTCTCCTTTCTAACATTTTCAATTCACTTTCAACTTTCTGCAGATA
AAACAAGGCGACATTACGATTCTTGATGATCAACAATCCAACATAAATCATACAACATGA
ACTTGTTACATATAAAGAATTGCCAGAACATGTCAACAAGAGATATCATTAAAAAATGAT
AAAATCATATAATTAACATGGATGCATCAACAATTCAACAAAAGTCATACAATACGAACT
TGTTATATATAAAGAATTGCCAAAACATGTCAACAAGAGATATCATTAAAAGCCATAAAA
TCATATAATTAACGCAGATACATCAAGAAATCGCTGATGTATTTTAGAATAGTATCACTA
TCAACTTAGCAATTCCAAACAGTTGAACTTCAAAATATTTCAAAAAATGATTGATTCTTA
CCAAAGCATGTTCCAAAGTTGTGAAAGGAAGTGCATACTCGGCAGATCCTGGAACGACAT
CAATCTTAGCTTCAGCCCCTAGAGCTAGAACGAGCCTGGCTGCCCATTCCAAAAGATATA
TCACCAGTTAGCTTATTCTAAACTCAACATAAAACATAAAAAAAAAGGCAGCCCGGTGCA
TGTAGCTCCCGCTTGCGCAGGGTCCGGGGAAGGGTCCCCGCAAAAAAAAGGCTCGACATA
AAACATGGAGTAAAATACATCACTATCTTTTTATTACATATTTCAACCGTAACAGCTACA
GAAAGTACTTGTATTATACAGATTAATATTGCATTATTACTAAAGTTCCCTCATAGAGTA
TTTACAGAAGATGAATCGTGGGCTACACGGCTACATGAGAAATTTTAATTGATATCGGAT
TCAAGAACAGACTGATGTAAGGAAAGGGCGCCAAATGACAATCAAGTATAATGGACCAAG
AGGCAATTCTAGTAAACTTGTATGCACAATTACGTTGTCACTTGTGAGGTTGAAAAGGTG
GGACCAGATCCACATGTCAGCAAGACACAAAATGTGTTCGAAATTTCCAAACCTTTTAGC
AGCATATTAAAATCAGCCCCCATGTCTAAAACTATTCATAAAGAAGAAACACTGAAGAAA
AACATAATTCTTAAATTCGTCAATTAAAAAAGCCTAAGCATGACAGCTATTGCAAATCCA
TGACATTTAATATCATCGTACCAATCATATTCAACAGCAGTGCCACTTTCAAGATGAACA
ACTCCACCAGTGCATGATACTCCAGGCTCTCTTCTTAAGTGATCAGAAGGGCGAAGAAGC
TTTACACTATCCTTCACAAATTGAACACTGGTGTTCTTCAGTAACTCTGTAAAATAGGGA
GCTATTTCCCAGACATCCACCTCTGGCATCCAAATTAAAGTCCAACAGTCAGAACATGAA
GTAATGTGAAAAGACCCCATATATAACATTACCAGCAAAAGCATTTTTACACTTGAAATT
GCAGTACCTCCTGATAAGAGCTCATACAGCATGGGCTTAAATACAAATCTGTCAGATTGA
TCAACCAGCATTACCTGAAACATTTTTCCCCTTCTTAGTAAAATGTTACATCATTTCTTT
AGCAAACACACATGAGTGCATTGCAGGACATGCGGACTGAGAAAAAGTGCAAAACTACAA
ATACCACCAACCCATGCTACTTCGATGTAAAAATGGATAGCACCCACCCGGCAAATATAT
AGGTTTCTAGCACAAGGAGCATCATCATTTTACCTGAGGCTTGTTATTACCAGGCCATAC
AAGAGATTCTAGTCTCAGAGCAGTATACAGCCCACCAAATCCACCACCCAAAATGCATAC
TCGTGGCCGCTGAAAACAAGAGACCACATTTAGTAAATGGAACATAAGGCTTATAGCAGA
AGCATACCGAACTTTCTGCTGAACAATAAATACTCACAATTTACCCTACATACAGACAAA
ATGCATGGAAGGACATGAACTCCAGAAGCAAAAACGTAAGGACACCCTGGTCTAGAAAAA
AAGTAAGGACAACAATTCCTCAAAAAAAATCCCTGCATATGAATAATGTTTTACCGTCAA
GCAGTTAAACTCGAGTGTTGTAATATAACAAATACTGTGTTACTCTGAACATAAGATATA
TTTGGGTATCTCTAAATGAAGTGTACCAACTACCAAACCAAAGTGTGTTCAACGGGACAA
AGTTAGCACAAAATTGCAAACCCCACATACACAAGTCAATGCTAAAACAGCTAAACAATG
CTTTGTCAAGGAGTAGAGGACTTTAGACGTAAAATAAGCATTGATAGTGTTACCAATTTG
CTAATCAAACAGAAAAAAAGTCATCGGATAACAATGGATTTAAGGATGTGGGTAATCCAA
ATCCAGTCTACCTGCTTGTCTGGCCAGGGGTACAGCGGCATCGGTGCTTCATCAATTGAT
TGAGGACGAGAAAACCCGCCATCCCCAGAGCCACCTGAAGCCGTGCATCTGAACAGTCCA
GACGGCAGCCCAAACATTGCCGGGACATCACCGATTCTCCACGAGTTTTTGAGGATTGGA
TTCTTCCACGAATTCATGCCCCCTGTCAGGATCCAGGTGAGCAGTCGGTTAGCCCGAGAA
CAAAATGTCACCTAATGAATCCACCACTTCTCAAATCACCCCATTCCCCAAAGCTGGAAA
GCTCACAAACTCGGTCACAAAAGCACACAAGCCGGGGCCTCGAGTATGCCCACAATACTC
CACATGGAGCTTAAATCAGAGAACCCCGAGGTCGCTGGAAGAGAGCTGGGGGGGAGCTTG
CGGCCTCACCGAACGGGCCGCGGAGGCGCGCCGAGGCGGGGAAGGGCCGGCCGCGGGGGG
GCGACGGGCGGCCCCATGGAGCCGCGCGGCAGCTCATCGGCGGCGAGGAGGAGGGGTGGG
GCCAGGCCAGACGTGGCGCGTGTGCGGTCGTAGCTCCCGGCGATGTGAGGTGAGGGGGGA
GGCGCAGAAGAGGGAAGCAAGGAGGGTGAGACACGGGAGCCGGCGGCAGCAGCACAACCA
CGTAACGCTGCGGCTCCTCCGCCGGCCGCGTCGTCGCGGAGCCTCCGAGCTCGCTGGCTG
CACACCCAGCCACCCGCTGACGATCAGGCTTCAATGTGAATGTTTGATTGGGGAGGCCCA
TATCGCCCAAGATGGGCCTTTATTTGTTATTACTCGAACAAAAAAAAAAAGAGTGTGAAG
TTTTGGAGAAATCAAGTGGTGTAATGCTATATACATGTGCAAACCAAGTTCAAGCATATA
TATATCCAAGGCGGCAACGCTGGAAGCTTTTGCTATTCGTGAAGGACAAGCTCTGACAGA
GGACGTGTATGTCGATGAGATCCACGTTGCCTCTGATTGCAAAATGGTGGTCAACCACCT
GGAGAGGTGCTCGGCGACGGAGTGTCGAGCTATCTCACATGAAATAATAGATCGATCTCG
TTTGTTCGTCTTTTTATAACATAGTTCATGAGTTTAGGAGCTCGAACTTCAAGGCTGACA
ATCTTGCTAAACATGTTTTAACACTCGGTTTTGGACGCCATGTCCAACCAAAGGAGTCGA
TCTTTTTGCCTGTAAACATTCTTGATCACTAATAAAGCTTGGCAAGGTTGTTTAAAAAAA
AATACAAACCAATATGTGATTGGATGATTAGAGGGACAGTGGTATCCCAACCCATCAGGG
TTCAAAATAATACTATATATGTATGTTGCAAGAAAGTTCTTTTTTTTTGCACCACGTCTA
GATGTTCTTTACGTATCTGAAAAAAAAGGGTGATGCGTCCAGATGTTCTTTACGTATTTG
TAAAAAATGTTAAATAATATAAAGATTTGTTGGGTTCACAAAAACAACAAAATTATGTAC
ACCAAAAGTAAAGAAACTAAAACAGTAAGATGGCGAGACAAGGAGAATGGACGTTTGCCT
CCCCATGGAGGCCTTTAAATTTGAAATTCAAATTTCATAAAAATTTATATTTTTACATTT
CAAAAAAAATTCTGAAAAGAAATACAGAGATATGTGAGGACGTAACACACATGTGCGTAA
ATTTTCAGGGCAAAATACGTTGAAATAAGAGCTGTGCAAAAAAGACAAATCTGAAAGTTC
TTAACACATGATACTATTCATCTTCTAGGGTCATGAATTTGTCTTTTTTGTACAGATCGC
ATTTCAACGTTTTTTATCCTGAAATTTTACACACATATACATGACATCCTTCTTTACTTG
CATGATGTTTTTCAGATTGTTTTAAAACCAGAAAGTTTGAGTTTGAATTTTGAATTATTT
TCAAAAAAAGACCTCTATGGAGCTTGGGAGCCAAAAGCAATTTCCGCGAGACAAGCTGCT
AGCTATAGAGATGCGAAAATAGTAATGTAGGACATCCTGTCTACCTCATGTAGCTGAGCA
TGCAGCTTACAACGGCAAAACAAGTTGGTTCCGAAATTGTGGACGATACACTAATGACTC
CGATGATAGAAATAGTCATGTCAACGATGAACCATTCATCACACCGGCCGTAATCCAGGA
TATATAAGTCACAACTCACAAGGCTTTCTCTAGCATACAAGTTTTGGATTATCGTCCTCG
TAATCGTCAGCAATGCGATCATCGCCGTCCTCCTCGGTCATGGATTATATTGCGCTCATC
CCATAGCCGGCAGGAGCAGGTCGCCTTCTTGTCCTTCCATTCTTTCCCACAGGTGTAGCA
GAACTCATAGCCGCACCTGCCAGAAGCAAAGAACAGGATGCAGCAAAGGTTAACAGGAAA
CAAGTCTTGAGGCTCCAGAATGGGCATTAGCGCACAGAAGACATTCCATAGAGTAAGGAA
CAGCCTGACATGAAAAATCACTGAGCATAGTAAAGATGGTTCTGAGAATGGCATGGCCAG
AGGTAAATACTTACACGCAAGTTATGTGGTAGCAACCCTCTGCGAGTTCAATCATGTGGT
TGCATTTGACACACTTGCGCCACGACCGCTGCTGCGCAAGGTTCCGCAGCTTGGCATCTT
CTGAACGAACGTGAGGGTGCCTTCTCTTGTAGTCACAGCAACTCATCCCAGCATGCCATG
GGACCTTACAGCTAATGCAGAACAAACCCTTGCATTTGATACACTTTCTCAAAGTCAGAC
CTCCAGCAGCAGTGTACATTAAGCCCCATGAGCTTATCGCTTCACGCGGAGACAATAAGG
CTGAGCACTTGGAGTACGGGCAATAGATCCTCTCAGTAGGAGGGATTTGTCCTTCCCTGA
TACGTTGCACCATGATCTCTAATAGCTGTGGCGACAGGAATATCTTTGAACCCTTCACAG
TTAGTTTGGTAGTGCAACCATCTTGTGGGCAAGCTGGGAGCAATCCATCACGTAGCTTAA
CTTTCATATGCTCTTTCATGCAGGAGAAGCAAAACCGATGTGCACAACCTTCAACCGCGT
GGATCTTAGAAACATCAGTGTCTTCCAAACAGATGCCGCAGGTCTCTCTCTTCTTGGTAC
CTACTAAATCTGTTGCTAATTTTGTTGCATAACCGACTTGGCCTCGAGGAATAAGTGAGA
GTTCACAGTGCTCGAATTTCCTCATCAGTGAAAGAGCCTCATTTACCATATCTTCAATCT
TATTCTTTGTGGGACGCCAAGTTCCAAGCATCTGGACGAATATGACAAGGTGATAAGATC
AGTGCAGTTCTAGTGAATTCAATCACGTGACCATTAAATATATCTATTATACGCAATAAA
AATAATAATTGTTTAGATTACTAAGACATCAGTAATAGAAAAAAGAACAACTCAAACTAA
TCTTCTACAACAATGGAATCAGACACCTTATATATGTCCTGTTGGAGCTTGTGTTCAGCA
AACCTGACGACGGGAAATACAAAGAGTAATGTAGTGTACTATAAAGAGACATGATGCACA
GAGATGAAAAGATGGAGGACGAAGGGTCCATGTAAAGCAGACACAAGTCCTCGCATAGGT
GATGTAAATTGTATTAGGTGCGCAAGGGCCTCGCCACGGCAACCCTCCTCACAGCATGGA
TGCTTTGGAAGCACCGCAACTCCTGTGTGTTCGACGGCGAACGGCCCTCCACTGCCATGC
TTTCGGCAAAGATCAGAGAGGAAGCCTCCCTTTGGGTTCG