Contig Data
morexGenes
Links



Map Locations of contig_49756 (6994 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_49756

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_65103 4 2505 bp MLOC_65103.2 Available Available LOC_Os04g53190.2, FRAME:-1, EVALUE:0.0, 13104.m05467 protein CPuORF12 - conserved peptide uORF-containing transcript, expressed
MLOC_65105 1 445 bp None Available Available None
MLOC_65104 1 723 bp MLOC_65104.1 Available Available None





CDS Structure of MLOC_65103






CDS Structure of MLOC_65105






CDS Structure of MLOC_65104






Contig Sequence (6994 bp)

>contig_49756 6994 assembly3_WGSMorex_rbca.fasta
TGTGAGGAGGCGTGGACGCAGAGCGGACGCGTTTTGACAATGGGTCGACGCGTTGAGCCA
TCATTTTTGTCCGCGTCGACCCAAACGGACGACGGCGGACGAAATGGATCGCCCCGTTGA
GGTTGCTCGACGCGCCGACCCGTTGCCAAAATGCGTCCGCTTCGCGTCTCCACCGACCCA
TCCGGCCCAAATTTGAGATTAAAATGCGTCGGCGCGAACACGAAGCAAACGACCGCGCGC
CCTCTCTGTGTCCGCATGTGACTGGCCTGGTCATCCACCCACCTCTGTCTGCTTATTTAA
TTCACTGACCCACTTCCACCCATCTCTCCTATTATTATAATAGGACCATGTTGTTGCCCA
CTTGCTTCCTATGTGCCGACCCATTTAAAAAACATACATGGACAGGCGACGGACAACCTA
AACGAATGAAAAACGGACAAAGCGTGCGTCGGCTTGAGTCGCTCCGTTAAAGTTGCCCTA
AAACACCAAATCAAACTTCACAGATAACCTGCCATTCATCACCAATATTAAGAATGCCAA
TGTAGTTAAATTACAATGTTTCATCACACATACTACACCACCAACTCTGCCCTACAAAGA
TTGGTCTCGTAGGCCGTAGCTCATAGCGCCTTACCAAGCACAAGCCCCCACATCACGCTG
ACAGTATACATACCGACACCCACAACTTTTTATTACCCGACAGTAAGTTTATTCAGCAAA
GCACAGGATCACACGACCACACGCCTCATGCCACGAGGAAGAGCAAGGATAGATTGCTCC
CACGCTGCCTTCCTCGAGCAATCACTGGAATGAACACCGGCGAACCTGCCGCGACAATAG
ATAGTTTATAAGGGGGCACGACTGTTTACAGCCGGGAGATGAGCAGCGGGACGGAGACGG
TGGCCGTTTGCTCGGCCATCGGGTGGCACATCTCCAGCATGTCCAGCTCCCTGAACTTCT
CCAGGACCCTCATCCTGCACTCCTCGGCCGCCATCTCCCCCGTGGAGAAGGCGCCATGCA
CCGTGCCCGTGTACTGGACGCTCGTCGCCTCCCCCGCAAAGAATAGGTTGTCGACGGGGA
TGCGGAGCTTCTCATACAGGTCGCGCGGCTTGCCCACCCCGTCAAAGGTGTAGGAGCCAA
GGGTGTTCTCGTCTGAGCCCCAGTGTGACACCAGGTAGTTAAGCTGCAATAGGATTTAGG
CAAAATGAGAGTAAGAACTGGGAGCAGGATTATTCTTTTTATCAGTATCTCAAGGTTTGT
GTCAAAATGCTTACCGGCTCAGCTGCATTAGGGAGGATCTTCTTCAACTGGGAAAAGGCA
AATTGAGCAGCGGCCTCATCCGACATCTTTTCAATGTCACAAGCAAGCCGGCCTGCAGGC
ATGTAAACAAGAACAGCATGCCCTGTTGCCTTGTGAAGGTTGAGGAAATAGCTGCAGCCA
TATGTGGTGGATGAAACTACTCCAAGGAACTCCACGTTAGGCCAGAAAACCTCACTGAAG
TGGAGAACTATTTTGTTTTCGACTCCAACTGACAGTTCTCTTATTGCTTCCTCCTTCCAC
TCCGGGAGCCTCGGCTCAAACTTAATGGTGTTTGATTTAAGAACACCCAACGGAACGGTG
ATGACTGCAGCATCCGCAACAAATGTTTTACCATTGCTTACAGTAACCTCTACTCTATTC
CAGTGCCGAACAATTTCAACAACCCTGAGAAGAAGAGCTTGGATCAGTACTAACAAATGG
AAGGTGGAACCAAGTTCATAACATTTAGAGGAAAAGCAGAGATATGCATACCTGTGACCA
AGGCGTATATCTAGACCTTTTGCCAACGTATTTATAACTGGACGATATCCACGAACCATG
AGACCATGTCCACCAGGAAGAAGAACTTCCTGCACTCAATTACACAGAATATGGTCATAA
ATAATGCAGAGATCTATGGCTATTTTATTAGTACTAGGAGGAAGGGTGTGAATACTACCT
GATCCCAACATTGGAGCGAGATGGCATCTGCATCAGTAGCAAACCAACCCTCCATGCGGC
ACAAATACCACTGGAGAACATCATGTGCAATCCCTTCTCGCCTGATATGAGAACAATGGT
GTCAGATAAGATAACCAATATCTTTAGGATACCCTATAAGCACACAGGGATTGATGGTAC
GAACCTCAAGTGTGGATTTCTCTCCAAAACAATTGCAATGGCCTTAGCTATAGAAATATC
TTCCTTCATTTCTTCCCTTAATTTGCCAGTCTGTGCACATATCAATGTTACAGGATATAA
AAACCAAACAAATATCAGCAAAAATAAATAAGCACCAAGAACTGAGAGAAGTAATTACCT
CTTCCAGTATAGCCTCAAACACTTTTCCTATCTCTTCTACAAACTCTTGTGGGACTTGAG
AGCCATTAGTGTCATAAAGTGCATAACTGAAAGACAATATAACCAATGGATTAAATTGCA
GCCTTGTTTGGTTTCATCATATGTCTGAACATACAGAACCTAGATTAAGTTGTACCTCTC
GAGATCATGGTCAAAAAGGACCGAGTCATCTCCACTGGTGCGGTACAGTGGAAGCCCAAG
TCTTCCAATGATCGGTGCCAAGGGATTTTCTTCACAAACACCATGAAGCCTAGTGCACAC
AAATATTGGAAATAAGATTCAAAATTGTGCTTCTAGATGAACTTTTGGTCATAAACAGTA
TAAACAATACTATAAAGGTAGCGCAGGGAGCCAGGGAAATAATGAACTCACCAAGATGCC
CCAAGATCAACTGGAAACCCAAAAGAGTAGTCAGTGTGAACTCGGCCACCTATCCGGTCA
CGGGATTCCAGAAGAACGACCTGGAAAGAAATCATAATAGCATAGCAGTTGAGATGACAA
GTGTATGGATTCCCAAAGAGCATTTTATGAATTGCAGCTAAACCATCAGAACAATATCAA
AAACCACATTATGCAATACCTCGAATGACGCATTCCTGAGCGCATTTGCAGCAGCAATGC
CTGCAAACCCACCACCAATAACAATAGCAGAAGGCGTGTGGGATTTTCTGCTAACATTTT
CACCGTATGAACCTGAAAAGGAAAATAGAAGGTTTTGCCTTAAAATTAGCGTGGAATATT
AAACTAGAAAGTTCGAAATAGAAGTGTTCAATGGTATGTGCTTATTTTTAGCGATCACCT
GTCCATGTACAAGTGATTTCTCATTCAATTAGTAAAGTTAGTTATTGAAATACTAAGTAA
TAAACACCAACTTTTGGGAACATCTACCAAAGGGCAGACAGCATGCAATGTTTTCTGCAC
TTATCCATATAGGGGGTTTACCTAAAGTTTCACATATCTTATGGTGGTTGGATGGGATAA
CAAACAGCTGTAATCTTCTGAAGAATTATGTGATTGGAGAATGCTTGTCTGCTGTGGGGT
TACTGAGCTCATGTATGTGGAGATTTATGGTTTCCAGGGACAGGTGTCGGTACTTATGGC
TGACAATTTGTTTTTATGTGACAAGGGGTACCTCCAAATGAAAAAAGACCAGTTCATACA
AAAATAACATAAAGAAGCCTACCAAGTAGTGAAAGTGCCGATATCGTCTGTTCTTCTCAC
ATCAACCCTCCTCTACCCCCTCCACCATGGAGGGTTAGTAGTGAGGCATGTTCCCTGTCT
CAGAACAATGATGGCGAAGTAAGACAGGACAATTAAAGATTTTCGCTGATTTTCCCAACA
ACTTGACACAGTGTGGACTGGAACTCCTAACACAATATGTTCTTGGTATGTAGCTCCAGA
GTGAACACTCTAATGTGTACGAGTATGACGGATCAAACTTAAAACGATTTAACAGTTTTT
ATTGGACAGGCAGCTGCAGATTAAACTATACCCATGATCATTACTAGTAACTTTTCTACC
TGTGGTTTGACAACATGTCTGTCCTTACAATTGAGATTGGACGGTTGAAGCTACTCCAAT
AAATGTGGAACAAGGATGCTTTATTTTTAGGCTATTGTTTATTTATGATGAGTCGGTAGA
TCTAGCTTTAGACAAGACAACCCTCTGCAGGATATGCTTTGGGCACTAAAAAGGCAGTCA
AACTTCAGTCCAGAACATAATCACTAAGCATCTTTTCATATGATGACAATAGTTGCACTA
AGATCCAAAAGTTAAAAAAAAAAACGATATATGAGTTGAATGAAACTGACAAGGGCGAAG
TGTTTTTTTATAAAACCGACAAGAGCGTTGCTAAATAGCGCAAATGAATAAATATTTTCA
ATTGTGGCGTTGGTGGATAGTGGATCCATAAACAGCTAGATCCGTTAGCGAATATTCTAG
ACAATAATACACGGCAAACTGCATGCATCACAATAATATCGATCAATATGCATGGAATCA
CAACAGAGGAGTAAAATAAAGCATAATTGTACTTCCGCGTGATGCCATTTGGGTAATCTG
ATTACAGGTATCTATGTGATAACTAATGTTACTCTTTACAAACTGTAAGAAGCCTGTGTG
GACACACTATTCCCAGCTGGTTTCCAGCGCTAAAAAAGAGCATGGGACTCCACAACCACA
TGGATTCGTTCCTGCCAAATGGGGCAGTTGGTCAAATCCTAGAAGCTTCCGAAGTGGTGG
GTGCCCTTTGCGTGAGGTGCTGGCATAATAACAAATGAAAAGCGGCTAGTAGTATTTCGT
TTTCTTCTTCCTAGCACCGACGAAAGAAACGGCAATTGCAGCTGGACGGTTGATGCCTCT
TTCGTCTGGCCCACGACGCCCCTCGCAACAACCATAAGCAACTACTAGTAGTAGAGTGTT
TGGCATGACAAAATCAAGTTGGACCACCTGGTCCCAAATCGTGGCGAAATTCGATTTTTG
CACCAAGAACGCATTGAAAAAGAATCTACGGTTCTGAAAACAATGCTAGTTGAAGAAGAA
AAAAAATCTGCGGAGAAGAAGCAAGGGACTTACTGTTGTTGTTGGCCATTTGTTGAGCTC
TGTTCTCCCCCTAGCGATCACTACTACTGGGATTGGATTCTCCTTCTTGACGATTGCTAC
CGCTGGGATTGGGATTAGAATTTGGTTGATTTAACAGCGGCTGCGGCGAGAAATGCAGCA
GGAAGATGAGGAGGCAGGCGACGTAGTGGTTGGAGTTGGAGTTGAGTCCCAGATTGACGA
AACAGTTCATGCAGACGCGCAAGCCGAATGGCGGCCCTCGTAGGAATTCACGGTCCCCGC
TCTCGATCTCACTCCACGCCCATCAAAGTTCCACGCGCTGCAAAAATCAGAACAACAGAG
GGTTAATTGAACAGCTCCGATCGCCCAAACAAAACAAAAAAAACGCTGCGCAGCCAGCAC
GCGAAACGAGGCTACAGATCGCGATGCTCCGGCGATTCCGGGAGGGGGGGCGGGCGATTG
AGGGAGGCTCGCTCAATCTGGGGTCGGCGGAGCAAAATCGCCGCGGAGCCGGCGGAAACC
GACACCGGAAATCCCCCGAATCGAGCGAGGCGATCGAGCAATTTCGGCACCCGGCCCGGC
CCATCCTCCCCCCCAAAACAGTCCGTGCGTTCGTTTCCTCCCCTGCCCTAGCCATGGCGA
AACCCTCACCTCCAAATCTAGACGACAGGCCGGAGCGAGCGAGCGAGCGAGCACGAGGGG
ATCTGTGTTCCGTGGATCAAAACCGGCGCGCTGGATTTCTGGGGGGCTCGGGGAGGGGAG
TTTGGTTGTAAGCAGGTGGGTGGGGGGAGAGTATCTCTTTGTGCTTCCTTCCTTCCTGGC
TTACGGGCTCTGCCTGGGGACGGTGCGTTGCTGCTGCTGCTGGTGTTTGGGCTCCTTCGC
CGCCTCCCAGGTGGCGTTCATATAGAGGCTGGTTCCCGGGACGAGGGGATTACGTGCACC
GCCCGGTGACCGCAACCGCGACACGGAGCCGGGAGGAAGGAAGCACGCACGCACGCACGC
GACGAGGGCGACGCGCTGGCGTATCGCGCGCGTCTGCTCCGGGATGGACGGCCAAGATCT
CCCAGGAGCGGCCCGGACGCGGACGACCGCATACATGCCACGCGACTTTTCCGGATTGCT
CCCTGTGAAAGGCGTAAATTAGTAGGGGGCAGACATTAGAGCAACTCCAATGGGGCGACC
CAAACGGACGACGATTTCGTTCGTTTTTTGTCCGTTTGGGTCGGTTGTCCGCCCTGTTTT
AGATATGGGTCGGGAGCGCGTCCAACGCATCGATCCATATGTGCCGGCGTGGCCGGCTGG
CCGTCCTATTTTGCATGAATTTGAATAGTTTGAATCAAATAATATAATTTAGACCGAATA
AAATAGCATAGTTATTACAAGCCGAATAAAAATAACATAGTTCTCATATAATTTTGCAAA
TAAATAAAAGAAGATAAATCTATTGGTTGCCAACATGAGCCCTCATATGGTCAACCAAAT
CATTTACAGTTTTACGTGAGTTTCTCAATCACGCATGTCTTGATGAAATTGGATGAACTG
TTCAAACGTTGCCGCTCCTCCATGTTCATGCACAACATTTTCATCGTGAAACTGAAACCC
TTGATCGTACAGACGTTCCGGGCGTTCGTTTTCTACGATCATATTATGCATGATCACACA
ATCAGTCATCACCTTCCATAGTTTCTGCGTGCTTCACGTATTAGCAGGATACCGAACGAT
GCCCCATCAAGATTGCGGAACACCGAAGGCACGCTCGACATTCTTCCTAGCACTCTCTTG
CTTTTGGGCAAATCTTTTCCTCTTCTCTCCGACAGGGTTGGGTATTGTCTTGACAATAGT
GGTCCACTGAGGATAGATACCGTCACCTAGGTAGTATCCTTTGTCGTAGTTGTGGCTGTT
GACAGTAAAGTTCACTGGTGGGATGTTGCCTTCGGCAAGCCTAGCAAACACCAGCGAGCG
CTGAAACACATTGATATCATTGTATGATCCGACCATGCCAAAGAAAGAGTGTCAGATCCA
GAGATCTTCAGACGCCACGGCCTCTAGTATGACA