morexGenes - Barley RNA-seq Database

Contig contig_49711
Source Contig contig_49711
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_49711 (8879 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_49711

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_65073	1	897 bp	MLOC_65073.1	Available	Available	LOC_Os12g30510.1, FRAME:+2, EVALUE:9e-71, 13112.m03108 protein DNA-directed RNA polymerase III subunit RPC9, putative, expressed
CDS Structure of MLOC_65073

Contig Sequence (8879 bp)

>contig_49711 8879 assembly3_WGSMorex_rbca.fasta
GCCGCCGCCGCCGCCGCCGCTCCCGCTCCCGCATCTCCAATCCTCGCTCGGTGCATAATC
AGGTCGCCGCTCCCCCTGATTACACAGAACGAGACACTCGTCGGTCGAATTCGCGCCGCC
CCGGTCCAGTCCAGCCCAAATACTGCGTCGATCTATCTACTTTGCTCCCGTGCACGGCAG
CGGCAACGATGAAGATGTCCGTACTCATTTGTTGTTTATGTTTTGTGTGCCATGACTATA
TTGTAGCTGTACACTACCCTCTCTATTGTGCAATTCCTTGCAAAACTTAGTTTAGTGAAT
AATGGTCCCTGGGCGAAGATCCTATCGGCAAGGAGTTAGTTGGTTTGATTGGGAAATTAT
GCAGATAAACTGTTGAGGCTGACATGTTGTCCTAACCTAATTTTGTTTTGCGTTAGTGTT
GAGTCACAGTTATGTCTCAAACTTTATAGCTAGATGCTGAATATTAAAAGCTGAATCTTC
ATTGCCTATCAGCTGTCTTTCTAATCTGAAGTTCTGAATATCCAAAGCTCTTTACTGTTC
TGCAGAGAGAAAGCAAATGCAGGACATCTCACCAACTTCGAAGTTCTCGACTTCTTACGG
ACTAGAGGTGCAAAAATTGATCCCATGGGATGTTTGGGGGCTGTTGCTGCATCAGAGTGT
AAGGTAGTCATTTGTTTCTCTGATGCTTGACCCAATGTGTATTCTCGGTAACCTGTTGAC
CCGTGTCCCTTTTTTATGCTTAAAATTGATCTCATGTTTATTGGTGCGACAAACAGGTAT
ATGAGTACCTCCTAAAAACTCCTGCTTGCAACCAGACAAGGGAATCAGTTACTGAATTTG
CAAACAGATGTGAGGGCTTCAAGCTTACTGACGCTGACAAGCAAAACATTATCAATTGGA
GGCCAGCCTCAGCAGCTGATGTTTATGCGGTATTGCCATGTTTATTTTGCTGATCTTAAG
ATGCCTGGTAGCATGCTATCTGCGGTAGCTGATACAAACCAAGACATGTAGATATAATAT
AGTGATACCCTGGACCATTTGTGACATCTTGAAATAGAAGTGTCTTTTGTTTTTGTGTTT
AGTTTTCTTATCCCTCATCACGATGAGAGGTTAAACTCAACACTGAACGTTGCCCGGCTT
TATTGGCCAGCTTTGATTGATTTTCTGAAATAGTGATGCAAATATATTTTGATAGCGATG
ATGCATCTTTCAGAAATGTGTGCTTACATATGTACTTTATTTATCAATAAGAGATTTAAG
TTATCCTTACTATGGATGTTTATTACTTATGTATGGATTCTGGCATCTGTAGGTCATTTT
TTACCTTTCCTTGATGAATTAAACTAGTATAGAATATAGATGAGCTGTGTTCTCTGGGGT
ATGGGTGCGCTCCTACTTTCACATGTATAGATGTGCATGCAAAACCGTATGCCCCTCATT
GATCCCTCTATAGTGAAACACTATGCTATCACAGAACGAAATTGATTTTTTTGTCCAGAG
ACTTTGAGAGAATCGTTGGGTCTTGTAGTCATCTGCTCGCAAACAAGTACCACCGCAATC
TGTTTTGTTGGCTCACCTCCATCATCTTGAGGTTTTAGGTTAAGACCTTGTTAATCTGAT
TTGGTCCGTTCTCTGTTGCAGATGGTAGAGGAGTGTGGGAAAAGATTTTGCAAGGATGAG
CGAGGAATGCCGCAGGATGAAGAGGACCGTGCCAATGAGCTTGTGGCTCTTGTAGACGAG
GTTTTCCCAGCACCACCTGCTAACCCAGAGGATGAAGTAGATGTGGATATGAAGGACGTC
TGAAAGGGTTTGATTCTGGGTGAAGAATACAGATTGTCGGATTGGCCTGTAATTTATCTG
CATGCATGTTCTGGCATAACAGCTCTCTGTGGATTGTGGCATAAGGCCATCTTGTTTGAG
ACATCACAGTTTGACCTATGAGCTTCAATGGCAGTTGAGACTCTTTTCGTCCTTGTTGTA
AATGAAAATGAATTGAAGAACTCTGGCATTTTCATTGCTATGTGACGCCGTCAACTCGAT
CCCTGAATTTATTGCACTAACTCCGTTTAAATTCCACTCCCTTGCTGAAGGAACAAATCA
AGCAGCTCAACAGCGTGTCAGTGTCTGTCAAGCTACTAATGAGCACAGTAGCGCGCTGCC
TCACAGAGAAGATCGGCAAAGGGAGGTCTGGATGTAGGGTCTGTTTGGGACTGCTCTGCT
TTAGAAAAAATCTGTTCCATTCTATAAGATGCAAGCCAAACAGGGTAGCTCCATGGTATA
TCGCTTCGCAAAAAACTAGAATCTGGGATGTAACTTCTTTCTTGTTTTTTATGAAGCTCT
TTAGCAGGTGGTTCATAAAATTGTAGAAGCCAGAGTTAAAAGAAAATTACCCATCATTGC
CACCAGTAAATGGATATCCCTTCATTTCTCCCATTCAATCCAATCAAATATTACATCCAT
CTCAAAATTCTTATCTTTGATTTTCTAGATACGGATGTACCTGATACTAAGACGTGATTA
TATACATTCATATACTCCCTCCGTTTCAAAATATAAGACCTTTTAGAGATTCCACTAAAA
GACTAAATACGGAGCAAAATGAGGAGCAAAATGAGTGAATATATACTNNNNNNNNNNAGC
AAAATGAGTGAATATATACTCTAANNNNNNNNNNAAAATGAGTGAATATATACTCTAAAA
TNNNNNNNNNNACATCCGTATATAGTTTATAGTGCAATCTCTAAAAGATCTTAGATTTAG
GAACAGAGGGAGTATAAACAAATCTAAGTCCAAAATTTTTGGACGGAGGAAGTAGATCAT
TTTCATCAAATTTTTCATTTCTGAAGCTAGAGCTACATGAAAGCCAAACATTCTCTTTGA
AAAAGTTACAACTCCTTTATGAAACTGTTTCAAAGTGAATTCAGTGGAGCAGAGTTGATT
TTGATGAAACACAGAAGTCCCAAAAAGGCCCGTAATCTACGATGGACCAACGACAACGAG
CCAGGCCGCACAAACCCCACCGCGAAGCATAAGCAGCAGCAGCCCTGCCTATCCACGAGC
ACCCCTATTTCTCGCCTTCAGCAAGAGGGGAGGGAAAAGGGGGACATGATGGGCCGGCCC
ACCAGCACGGGAGGCCACATCCTCCTTTTTCATTTTTTTACATTTTTTGCATTTTTTTTT
GCTTTTGTTTATACCTTCAAATATATTCCAAATGTATTATATGTATATATTGTAAACAAA
ACACTATATTTTAACATCATAAAAATGTTAAATCATTATTTCAAAAATGTTGACCAAGTA
TTTGAAAACTGCTGAAGAAATATATAAAAAAATGTTGATCATGTATAAAAAAATGTTGAT
CATGTATACAAAATGTTAATCAAGTTTGGAAGACAAATATTAAACAAAGTATATAAGAAA
CGTTGAAAAAATATATGAACATTTTGTACAGGTATTTTAAAAATGTTGAACAAATATTTG
AAAAAATATTAATCATGTATATAAAAATGTTGAACAAGTATTTGAAAAATTATTGATCAT
GTATATATAAAATGTTGAACAATTATTTGAAAAGGTTGAACAAGCATTTGAAAAAATGTT
GAACACACATTTAAAAAATGTTAATAAAACATTTGAAAAAATGCTGATCATGTATATTAG
AATGTAGAATGAAAAACATAAAGAAACAAAAAAAATGAAAATTGATAAAAAAATTAAACC
AAAGAAATAAAGAAATAAAAAAAGCCGGAGAAAAAAATGAAAACCAGAGAAGAAACAAGA
AACCAAAGAAATAAAGAAATAAAACAGGCTCCTTCCCTTCTAATAAGCCGCGCAGTACCT
ATCATACAAGAACGTGAACTCAGTGCATTGGTTAGCATTGTCGTGGTGCAACATGTAGAT
TGCAGGATCGTGTGCGCGCTTCATAGTGGGCCGACCCAATGCTTCCGACGCGACCCTTTC
GTGTCGCATAAAGCAAAAAGTAAACTTCTTTTTTTGAGAAACAAATCGCTTTTCTCAAAA
AAAAAAAACATTACGCCTACCCACGGACCCAGCCACAACCCTCGCGCACAAGTAAAGGGC
TCGGTGACGTGGAAATCCTCTCCACCGGCAAGGTCCCAGCCACAACCCTCCACCCAGCCA
CAACCGTCGGTAAGGCTTCTGTGCACGTTTTTTTTAATATTAAATATCCAAAAAAAATAT
GTCTGCTTTTTGTCATATTCAAATGCTACATACAGATTTGTATGAAAAGAGTATTAATAA
AGTATATTAAAAGTGGGCACTGCTACGCGTTCATCGGTTGATCCGCAAGAAACATCCGCC
ACCTTGAGAGCCGTCGGATGTACGCGCGCAGCCGTCCAATCTACCTCCTGGCATGTGGCA
CGGTCGCCTCCTCCGAATCATTAATTCCCGAAACAACGGTCAAGTTTCAGAAACAAACGC
TTTGTTGCAGAATAATTTTGGACTCATTAATTCCTGAAACAACGCGAATCGCAGAAACAA
GCCTTTGTTGCAGAATAACTTTCACCATAGATGAGGTCGTAGAAAAACTTTTGTAACAAA
GAGCATATTGCAGTTGTTTTTAAAGAAAGATGAGGTTGTAAAAAAAATTGTCTTCACTTT
TCTGCAACACGGGGTATTGTTGCAGAATAAACTTCTGCAACACAGATGATGTTGCAGAAA
ATATTACAATAAAAATGATGATACAGAAACACCTCCGTCGTTGTAGAGAGCATCGCCATC
GTCGCCGCCAACCAGAAGGCCATCCACCTCCGAGGTCTCGTCCCGAGCGCCGCCAATCCC
CGTCGCCGGTCGCGTCGTCCGGCGAGCTCGTATCCTACCTCCGTCTCCGAGATCTCGTCT
TGAGCACCATCAATCCCGTTGTCAGTCGCGTTGTCCGGCGAGCTCGTATCCTATTTCTAT
GAAGCGCTTGCTGTTGAGGGCCATGGCCGGTGTGTGATGGATGAGGCTGGATGGCTCGAA
GGAAGAAGATATAAGAAGAAAAGATGTGGAGGAGAGTAGTCTAATGAGAATATAAGGCAA
CACGTGGAAGCGGTGTGTAGGTCAATTTAGACACGCGTCATCCATAAAAGGAGGCGGAAG
CAACGAAAAAATCAGCCGGCTGATTGAGATTATTTCCCATATTAAAAACACCAAATGTTA
CCCTTAAATGTCATCCTAGATTTGATTTTTACCGTTGAAACAATGTTGCTCCGTTTCGCA
AGAAATTTTCAACAATGTTTACGACACCAAACTATTATCTACAAAAGATTTTTTTTTTTA
AATACTCCCTTCATCGTAAAATAAATGATTTAAAAGTGACTCAAATTTGCATTAACTTTA
GTAGAAAGTTGAGTAATTTTTAAGTCACCTATTTTAAGACGGATGGAGTACTGTATTTTC
TGTATTTACTATTCACGTCGGAGCGCACCCTCGCCAGAGCCAAAATGTCGTTTTCTGACA
TGGGGATAGGATTATTACGAACGGGAAATGAAAGGTTTTCGATCACTGTCCACGAACGCT
GAGATATAAGGCCACAAGTTAGTCGATCGTGATTGTAGTTGTAGATGCTCAAAGCGGCCG
TGCGGATGTCCTTGCGAAGGCCATTTGTGTTCCATGACCACTTGATTGCACGGACCAGCT
ATGCCGGTAGACCCTTACAAACCATTCCGTTAGGTGAGTTGTCTACGTTTGCATACTATA
GAGCTAGATACGGGCAGTACCCCCCTACTGGATGCTGTCTATGCACCTTCCGTACAGACA
TCTCCTTCAAATCAACCTTCTATATGCTTCAAAAATGCGTATAGAGCTCCGCTTGTTATT
CGCGTCACAGAAAAAGCATAGAGCATCCACCCCCATTTTGACCATATCACAATGTTGACG
TTGACAGATCCAGTCTCTTGCTAGTGAAACTAAGAAACTCCATCGCAAAAAAAGGTGGCG
AAACTAGTGAGAAAAAACCTTGAATTCGTTTATAGCTCCTTTGGCACCCCTCATTTCATT
TTATTTGGTAGAAATGAAGTGAAATGAAATCTTCACGAGGAATTCATTTGGTTGGGATGA
AAATTTTGATCCAAAAATCATGTTTGGCTACCACGAGGATTTCTAGATTGAAATGCCAAT
GGATCTCGTAAAAGATTGAAGTGCATGAGAGTGGATTAACGAGGACGTCGTCCTACTGCT
GTCGATCGAGTGATCTTGTTAGGGCTGTGAGATGCAATAAAAGGTAGTGTGAAAAGAGGG
AGAGGAGAAGCCTTACCGACGGCGAGAGGGACCTTGCCGGTGGAGAGGACTTGGGCAGAG
GAGAGGGAGCAAGACAAGGTGACCTTGGCGGAGGAGAGGAAGCGGGGTGGGGCGACCTTG
GCGGAGGAGAGGAATTGGGGCGGGGCGACCGTGGCGGAGGAGAGGGAGCAGGGCGGGGTG
ACCTTGCCGAGGCGAGAAAGCGGGGCGGGGCGACCGTGGCGGAGGAGAGGGAGCAAGGCA
GGGTGACCTTGCCGGGGTGACCTTGGCGGAGGAGAGGGAGCAGGGCAGGGCAGGGCGACA
CTGGCGGAGGAGAGGGAGCAGGGCCGGGAAGCAGGGCGGGCGACCGTGGCGGAGGAGAGA
GAGCTGCGTCAAATCCACGCAAATGATAGGGTCTGGGGAGGGATTTCGGTCTAGGTACGA
TACTAATTCATTGGATTTGACAAATGAATTCCGTGGGTCAATTCCGCGACAGCCAAGCAA
GTTAGGGTTGGAATTCCGAAATGAAATCCGTAGATTTTGGCCCAAATGGCGGGAGCCAAA
CGAGCTGTTATCTTCAATACCCCATCATAGCACACCAATAGCAACCACCTTTAATAGGAG
AGTAGAGTTGTCAAATTCACAACACATGAGATGACATTTCAATTTTTTATGGGTCTTCAA
TTACACGGCTCCTTTTTTTTAGGGCTTCTTTGTGTTAATAAAAACTAAAATTTCAGATGA
TTTTAGTCCATACTTTTTTTATAAAGACTCCTCATTTTAAAGGAATGGAACATGTTTTTT
AAATAAACACGGCACAAATAGCATATATGTAGGCCGACAGTTAGAACCCCTAAAAAATGG
GCAATCGTACGAATCATTGAAGTTTTTCAAGGCCTAGAAAACCGGTTCAACTTAACTCTA
GACTACTACTCCCTCTGTTTCTAATAGGGACGGAGCTAGTGGGGGCGAGCGGGGGCAGAC
CCCCCCTTATGGATGGGCCACCCCCAACACATTCGAGAGGGGGCTAGCATTGCACAATGT
AGAGCACCGGCGTTTTTAGCTACTAAAGCACCTGTTAATTACGGACTATCACACCAGGCA
TCGTAGCAAATATGGATGCAACCAAGCCCAATAAGATATAGCCCACGATGGTCAGCTAGG
AGAGAATGTATACGCGATCCATTCATTTGCATACGACATACAGCGACTCCCGATTAGACT
TGATTGTCACGGTCGATCTAGGGCATAGCTAGCCACCGTCGCTGCCGCCGCCACTGTTGT
CGTCGTCGCCACTGTCGTCACCGTTTTCGCTGTCAGCTTTGGATAGACCAAGCATCGTCG
TTTTGCTCTTGACAAAAACACCATTGCTGCACACCGAGTCACGTCGCCGTTTTCGCCGTC
AGCTTTGGATAGACCAAGCGTCGTTGTTTTGGTCTTGACAAAACCACCCTTCCACGCATT
GGATGCATAGTTACTCGGAATCCAGAACTTGGCGGTGCGACTCGTAAGATTCAACCCTAG
ACGAAGGTATATCATTACATATCATTGTATATATTGATACTACTATTAGATCAGTACAAA
TTATTGTTTAGTATTTTTGTTATCTGTTAAAATTAAATACTAGTTAGATAGATGCAAACT
ATTAGATACAGATTTTTGACAGGGCTTGTATACAACCTTAGAGTCGCACAAAGCAAAAGC
TAAAACATTTATTTGAAAGTCTAGTTTGTCTACTTTGGATGTTTGTCAATAATGAAGATG
AAATAATAATGAAGTGCCACCTAACTTTGGAAAATGAAAATGTAATTTGACAAAGGGAGC
TGGCCCCGATGTCATTTTAGTTCTTATGCAAACTCCAAATACAATATTGTGGCATTAGTA
GACAGTGCACGGTTATTATTATCTTCGCCCCTCCTCCTATGCTCGAATCTTCGCTCCGTT
CTTGGTTTTCAAATATAAGCTCTTTTAGCGATTTCATTAAGAGACTACATATATAGACAT
ACTTTAGAGTGTCATTTATTTTACTCCGTATGTAGCCTTTTAATAAAATCTCTGAAGGCT
TTGTTCGGTTCCTTCAGAATTAGAGGGGTTTGGAGAGGATAGGAAGGGATTAAATCCCCT
ACAAGTCAAATTCCACCTCAATCTCTTTCAATCCTCTTCAATCCCCTCTTCGGTGGGATT
AACCGAGCAGGGCCGAAAGGATTTATATTTAAAAACGGAGGGAGCAGAATGTAAATGTAG
GCGCGAGCGGTCCGGTCCGTTGCCCTCCCCATGAGTTTATTCTGTTAAATATCTATGTAT
AGGTTGGTAGTTAGGAGATTATCTCTGTTTATGTTTATCTTTCTATCTCCTAAAACCCTC
GTGTAATACCTCCTGGTAGTTAGCCTCGACGCTGCTATCTCTATGTAACCGATCCCCTCT
AATCAATATATATACCGTGGGTCTCCATGTATGGAGATTGAGACGCTTCCACAATTTCCA
CATGGTATCAGAGCGGGCCTCTTCCACGACATCTAGCTCATCTTCCTCTATCTGCTTTCC
TCCCAAACCCACCACGCCGCAACTATGTCCTCCTCCTCCGCACTCCCCTCCTCTGGCCTC
AACTACAACACCTCAAAACCCCTTAGCCGGACAAACTATGTTCTCTGGCGAGCCCAAGC