morexGenes - Barley RNA-seq Database

Contig contig_49700
Source Contig contig_49700
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_49700 (6368 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_49700

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_65064	1	1646 bp	MLOC_65064.1	Available	Available	LOC_Os06g51370.1, FRAME:+2, EVALUE:0.0, 13106.m05549 protein OsSCP38 - Putative Serine Carboxypeptidase homologue
CDS Structure of MLOC_65064

Contig Sequence (6368 bp)

>contig_49700 6368 assembly3_WGSMorex_rbca.fasta
AACACCATGGCAATTGTGCTGAAAAGAGCGTCCGTCCGGGTTAGTTTCATTCAAATCANN
NNNNNNNNNNNNNNNNNNNNNNNNAAAAGAGTTCGGAAAAGTAGATACTATGAAGACGTA
TCAGCTGCCGCACCCCGGATTTGGTGGACATGCGGCAGAACTCCCTGGGTATGCTCCTTC
TGGAGCTCCTCAACCGAAAGTCCCTAAAGCACGCGTCCCTGCAGGAGGGTGACATCGGAA
CGCTGGACCTGCCGCGGTTGGTGCACTCGATGGTGCGAGTGGAGTGGACGGCCGAGATGT
TTGGCGTGGAGCTGGTGCGTCTGGGCGTCGTGCCGAGGAAGAGATGGTCGTGCAACTGTA
GACACCAACGCAGCTATGGCATAGCACGCCGCTGGCGTCCGTCCACCGGTGCACCGCACA
CATTCATGCCTCCCACGGCCAGATGTCCGGAAGACCTGCCGGCACATAGCTACACAACAG
TTTTGATTAGTTGATAGTCCCACACCATTTTGTTAAACACAATCCTACCAGTTCAAATAT
GGTTATGGATCAAAGACAACAAGGAGCCTTGAAGGAATTGGTCAAAGAAGGAATTAATCT
AGGGAAAGAGATCATGTAGCTCGAATAGAGGGAGATGACGAGAGGTGGTCGAGGGACGAG
GGCTCGAGGCGAGTGTGGGAGATGCTAGATCAAAGATGTAGCTGTTGGTTGAAAACAACA
AGTGGCCTTGAAGGAGTCCAAATAAGGAATTAATGAAGGATCTAAAGAAGGAAGTAATTC
TAAGTAGTCGGTGGAAGAGATCCATTGTGAGGTTGGACATGGTCCGTAGGATCCAGCACC
AGATCGGTGGCTAAGATCCATTGTGATGTACTGCTTCCTGGACCGAGCGAGGAGAAGCAC
GGGCCGGGAGGAGCTGGAAATGGCCGGCAGGGTCCAATACCAGATCGGTGGCCGATCTCC
ACATGTGATAGAAGGTGGACCTGGCTGGGCCTTTTAGGGCACGGTAGAAGGTGGGATGGC
CCGTGCTGCTGTCGTCTTCTTTATTTTCGTTTCTTATTTATAGAAATTAGAGAGAGCAAA
AAGAAGAAAATAAATAGGCTGTGATTTTATAATATGTTGAACCTTTTTACGTCGAGTCTA
AGATTTATACTTAGCCGAAACTAAAAAGCATACACCCATTTTTGGGAAAATCAAATTCAG
ATTTATTTGAATTTCCAAAAATGTTGGTATTTTTGGTGGAGTTTATGATTTTTTTCTGCC
ATTGCAACGCACAAATCCTTTTGCCAGTACCGAGTCAAATAATCAACGTGAAACAATAAG
CCCGTGATTAAAATTCGTAACAAAACCTGAGAGTACATACATGGAGTCGCATTAATTGAA
AAATAGAAAACATGAAATCGCATGAAATTAGAGCATCTACAGCATATTGGCCCTCGTATG
TTAGATCGGTGCGTCTTATTTGTTTCCTTTCACATCCGCAGGTTCCTCATGTCCAAACCC
TCATATCTATCTAATTTTTTTTGCGGAAGTCATATCTATATAATTTTAAGGTTTTAGGCC
CGTTTAGCGTTGGATATGAAGGCCCTTGTATGTTAGATCGGGTTTGTTTCATATTCGTGT
TGAATATGAAGGGTGTCGCTCAGGTCAAATGTTTTAAGCCCGTTTAGGGTTTAGGGTATT
CGTCTCGATCAATCTTTTTAACCGGACAGACGGACGTTTAAGAGGTGTATGAAGTGTAAA
TGCTCAGCTGGATCATTTTGAACAGACTGGCCGCGTTTTAATCCGTCCAGATACGTGTAC
CAGTAATAGATACGTACCGGACTAATAACGACTTACCAGACAAATCAACCCCGCATCGCA
ACGGCCAGGTACGAGCCGAGATCGTCTTCTATCTCCTTCCCCGCTTAAGACTTGATTCCC
ATCCAAACGCGTTCGAAACCCGATCCGGAAGCCCTTCAACCTGCTGCCATACATATATAC
CCACGGGACAGACGCCTCGAGGGCAGAGTACCACGCAGCAGTTCACGAGCGTCTTTGCTC
TCGATCTACGTATACGTCGAGTAGCCATGACGATGTCGAGGGCGGCGGCGGTCGTCCTCC
TGCTGGCGGTCGCGTTGGTCTCGACCACGACGACCGTGGCGGCGGCGAGGCACCACCACC
ACCACCACCACGGCGGGTTCGGGAAGGTGTTCGACCGGCAGGAGGCGGACCTGGTGGAGG
CGCTGCCGGGGCAGCCGGCGGGGCTCGGCGTCCGGCAGTTCTCCGGGTACGTCACGGTGA
ACGAAACCCACGGCCGCGCCCTCTTCTACTGGTTCTTTGAGGCCACCCACGACGTCAGCA
GCAAGCCCCTCGTCCTCTGGCTCAACGGAGGTATGTACGCGCCATGAGCGTCTACTCGAT
CGGTGATCTGAGTCCTGGTGTTGGTCGTTCTAGAGTCAAATATTATTGCATGCATGCATG
CAGGGCCCGGATGCTCGTCGCTTGGGTTCGGAGCACTGGAGGAGCTGGGCCCGCTGCTGA
TCCAGAATGGGACCCCTGAGCTCAGGCTCAACCCCCACGCATGGAACAAAGGTTCCAACA
AATTCATCACAATCCGTCAAAATTGAATTGATGATTATAGTTAATCTTAGCTCTTAATTT
ACTGTATGTGTGCAACTGCAGAGGCAAATCTGCTTTTCTTGGAGCAGCCTGCCGGCGTCG
GATTCTCCTACACGAACACCACCGCCGATCTCGAAAGGTTCGGCGATGACCTCGCTGGTA
CGTACTCAACCCATGCATGCATATTTTTCTAGTTTTTCTTTGATTAATTGAGACTTACTC
GATCGGGTGGATGCGTTTGTGAATTATAGCTAACGATGCCTACACGTTCCTCGTCAACTG
GTTCGAGAGGTTCCCGCAGTTCAAGGGCCACGATTTCTACATCGCCGGAGAGAGCTATGC
CGGTGATTACTCCTAGCTCTCCATTAATCTTTCCTAACCGATGATCTCGTGATGTACGTA
AGTAGATAAATTCTGATCAACTTCTTGAATTTTATAGGCCACTACGTCCCCCATCTTGCC
GAGAAGATCGTGGAGCAGAACAAGAAGGTGCACAAGAGCAAGCACATCAATTTCAAGGGA
TTCATGGTACGCAATCAAATTTCTAGTGCTCCAACAGGAATCAAGAAATTACGATTTAGT
TAAACTATAATTGTTCGTCCTATACGTTGCCAGATCGGGAACGCGGCGATCGACGAGGCG
TCGGACAACCGCGGCATGGTGGACTACGCGTGGGACCACGCCGTCATCTCCGACGAGCTC
TACGACGCCATCAACGCCAACTGCAGGTTCGACCAGGCCGGCAACAGCAGCGACTTCTCG
TCGTCGGGGCAGAACCCACCCAACGCCGCCTGCGACCGCGCCATGAACGGCTTCTACGAG
GCGTTCGACCACATCGACATCTACAGCCTCTACACCCCCGCCTGCACCGCCAACCCCTCC
GGCGCCGGCGCGGCCGGCCAGCTGCCGCGCCGCCTCCACCGGTCCTCCGCCACTCAGTCC
GACAACAGCAGGCCCCTGCGGCCGCGCTACAACAGCTACGACCCGTGCCTGGACAACTAC
GTCGCCGACTACCTGAACCGCCGCGACGTGCAGGACGCGCTGCACGCCAACACCACCGGG
AGCATCCCCTACGCGTGGACCGCGTGCAGCGACCCGCTGTTCCAGCACTGGAAGGACTCG
CCGGCGTCGACGCTGCCGGTGATCAAGAGGATGGTCGACGCCGGCCTCCGCGTGTGGGTG
TACAGCGGCGACACGGACGCCCGCGTGCCCGTCTCCTCCACCCGCCAGGCGCTGCGCAAG
CTCGGGCTCAAGACCCTCAAGCAGTGGAGGGAGTGGTTCACCAGCGACCAGGTCGGCGGC
TACCAGGTGGACTACGACGGCCTCACCTTCGTCACCATCCGCGGCGCCGGCCACATGGTA
CCCACCGTCACGCCCGTGCAGGCCAGGCAGCTCTTCGCGCACTTCCTCGCCGCCAAGGAA
CTGCCGCCCAAACCCATCGTCGCTTAAGCTTGGAACTTAGCTAGTGCTTGGATTAAGCCA
TTATATACATAGAATATATATATTAAACTATTAAAGGTTGATATATTTTCGTTGAGCAAT
TAATTGAAAGGGGTGTGAGCCCGGTTAAAAATATATATTATATTAGAGGTTGGTACGTAA
ATCAGAATGCTTATAGTAAATAAATACAAGTATCTTGTTTAAAAATACTGGTAATTTATT
TTGTTGCAATAGTGAAACTTTGATCACGTTGAAAGGAAGAATTCTTAGTGATTCTCCAAA
CAGCCGTAGCCACAAATGATTTGTTCACAAAAGATAAAACACATATGCCCAACCCAATCT
CATGCACGGATTTACTCCTTCGTGAGTGCATAGGTTAACAAATGTCTCCCTGAGCTTTGC
TTTTCGGTTTGTGAATTTTTTTTGCTCAAGGCTTAGATGGCCGAATTTCGGTTATTTTTA
AAAATTTCGGCCTTCTTCAAACAGCCGTAGCCACAAATGATTTGTTCACAAGAGATAAAC
CACAGATCCTCATGTACAAATTTACTCCTTGACGAGTGCATAGTTACAAATGTCTTTCCA
TGGCCCAAGCTCTAACACATATCGGCTTGGAGTCTGATGTCTAAATCTCGGAGTGGCTGA
GGGCTAGCCTGCTGTTCGTCTCTCTCTTGGAGTTTAGTGATTGTCCGGCATGCATTGCTG
TTCGTCTCTTTCTTGGAGTTTAGTGATTGTTCGGCATGCATGCCGTGTGTTTGGCTTGCA
TGCCATATATCTTACTCTTTGCTTCGCGTTTCGTCTTGGATGGTGGTTCGAACTCGTGGT
GTTTGCTGTTTGTGACTCTGTCTGATGGCTTTATTTATAAAGTCGGGGATGAGTGCAAAA
TTGTCATGGACGTCCATGCATGACGGATTTAAAATCTGTCATGTACATCCCGTCATAATT
TGACATCGTACCTTCCATAACGGATCTTGGCCATCATGGATCTACCCCAGGACCGCTGAG
GCCCAAACCATTGTGCCGGAACAATCCGTCGTAGCCTTATGCCACGTTGGATTTTTCGAT
TACTAGTTGGGATAATGTGGCTGCCTACGTCGATATTACTTTTCGTCACACAATTCGTCA
TGGATTTAGACACAATTAAAATTTGGTCCAATCCATTTCTTTCAGCCCAATTTTGACACA
ATACATCCTTTAGTCAATTTTGGCCCAAAGAGAAAGTATTTCTAACCAGTTCACACAATA
TACAACAATAGGTATGTATGTATTTTGCTCAAGAAGAATATGTATGTATATACAACATAT
CAGTTTACACATCATGTAGTGATAATTTACAACATAGATTCATTAAATATATCACACAAC
AAGGTTAATAAGCAGTACAATCAAGCTTACATAACAAAACAAATAAACTTTCAAGGATGT
TATTTAGGATCCTGCCGTCGACTCTCCTCATGGCAACTATCATGTTGTGGCGGATTATGA
TTGGTAGCACCGAGTAGCCCGCTAACCAATCATACCTAGCATATTTAAGAGAACATTAGA
TTTTGCAGATTCATAAATAGTAGAGACAAGAAAATTACAACAAAGGTAAAAAATGAATTA
CATGTCCAAAATTCTTAATCTTATTGTTCCTACAAATGAGAGTAACATTGCATCTACTAT
ATAACAAGAGTAAACTGGAGGTTTTTTAATATTAATCCATGAAAAGTGTGTGACACGAAG
GTCAAACCAAGTCAATCTATAATTGACAAAGTAACAAAACAAAAATGAACATTCGACGAG
CAGCGGCATGAAACTCAATGTTTATGTTGCTGGTACATCTCAAAGCGCTGACAAATCTTT
AGAAGACTAAGTCTCAGTTCTTTTTTGGCTTATGGATAGCTTGTGATGAAAAATAAGCTG
AAATAAAAAAGAACTTGTTTTTTAGTGTCCGGCTTAATTTCCAGCCCAAGCCAACCCCTT
CACGTTTTTTTTTGAACGGGGAAGGCCAGGATGGCCTTTATATTTCATAAGAAAGGAGTG
TTACATCGTTTGCTAATACATCGACAAGGAAACCCGGGGGTTCCTCAAACCACTTAATAG
TTTGAGTGGTTACAACATTTCTAGCAAGAGTATCAGCTACCATATTGGCCTTCGTAGGGC
AGAACTGAAATTGGATGAAACTAAAATTCTTAGTCAGGAAAGCACATTCTTCATATATTG
CATCAGCCGGTCCAAGTGAGTTTCCTCCGTCGCACATAGTGTCCACCACCTCCATGCAAT
CACACTCAACCACAAGTTGTTCCAGCCCCAATTCATTCGCCAATAGAAGCCCATCTCTCA
GACCTCTA