Contig Data
morexGenes
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Map Locations of contig_49644 (3906 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_49644

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_65022 1 902 bp MLOC_65022.1 Available Available LOC_Os07g12080.1, FRAME:+3, EVALUE:4e-26, 13107.m01242 protein LTPL169 - Protease inhibitor/seed storage/LTP family protein precursor, expressed
MLOC_65023 1 381 bp MLOC_65023.1 Available Available None





CDS Structure of MLOC_65022






CDS Structure of MLOC_65023






Contig Sequence (3906 bp)

>contig_49644 3906 assembly3_WGSMorex_rbca.fasta
TTATTACTATATACAAGTTCATACATACTTCTCATAAAACAGCATACAACTATCTAAAAC
ATTTAAATGCAACAACAAATGCAATCAAAATTGCAACTAAAGTAATAATAGATCCAACAA
CATAATGATACCAAGCCTTTTTTTATTAATGATATATTTGCTAATCTTCAAGCGCATTGC
ATCCATCTTGATTTTGTGATCATCGACGACATCGACAACATACAACTCCAATTTCATCTT
CTCTTCTTCAAATTTTTTTCAAAAAATTTCTTCAAATAATGGTTTTCTTTTTTAACTAAA
TTTAACTTCTCGACAAGAGGGTCAGTTGAAATTTTCGGTTCACATACCTCCTAGATAAAA
ACACCTATGTCAACTAGATGGGCATAATTATGATAAACACGAAAAGAAACAAATAGTTAT
AAAAAATAATATACCACATCCGAATCATAAACCGAACGAGGGCTGACGAGGACGAATATC
AAAACCATGGCACTATATATATAACAAAAAATTATACAAGTAACTATCTAAATCATACAA
ATTAGTTTTTTTTTACAAAAATGATAAAAACAAGAGGCTCACCGAGGTGGTACCGCCGAC
GGGACGGCACATGCGATCGACGAGGTGAGGACGGCGACGGGAAGGCACTAAGTAAACCAC
ACCTACACACATGCAAACTAAAAAGTCAATTTGGGCTCAAATTGCATATAAAGCAAATAA
AACTCTCACATAATTACTCTAAAATAAAATTATACTTATAGAACATGAAACGAGCTAAAC
TTACAATGAAAGATGAAATGATGAAGTTGCTAACCTTTTAAAACCATTGGATAGATGGAA
TGCCGTCAATCTTGACAAATCTTGACAAAAATAGAGGATCAACTTGAACTTGGGGAAGGA
AACAGAGAGAAGAAAAAACTTGGACTCGAACTGAAAACGGCAGATCTTTACATAGAAAAG
ACTTTAGTCCCGGTTGGATATACCAACCTAGGACTAATGGTCTATCTTTCGTCCCGGTTG
GTTGGTGATACCAACCAAAATTAAAGGGGTTGTGATAGAAGGTCTAATTTAAACCGGGAC
TAATTCTGATCGTACCCCTATACGCTTTCAGACGTTAAAATCGGGACTAATGCTCATATT
AGTCTCGGACCTAAACCTTGTTAAAACTAAAGTTCTGGCCAAAAGATCTGTTTTTTTATG
TTGAGCGTGTGGCCGCCGCCAGTCTCGGCGTCACCTTGAGCGTAGACGGCTCGCGCTCCT
GCCGTGCTGCACTGCGTTGAAGTAGGGGAACACGGCGTACGCCCAGCAGTTTCTTGTCAG
CTCCGCGTATGGGCTGGGCCTCAAACTTAACTGCCTCTCTCAAAGAAAAACTTAACTCCT
CTTCTAGACGGGTTGATCAGTTGGAGATCGGTACCCTCATTTGCTTACTAACGGTACCAG
TCAAGTTTATTACCGTGCTTTGTGTGTATAAATATCCCCAGCAAGCAATAAGGTACTTGC
TGCTGCTGTCTCTTGTGCTTTGCTATTAACTCTAAAACAATGATTTGCAAAGGGGGGTTG
CTCACACGCACAGTCGTCACATGTTCTTAACTGCATGCAAAACCAAACTCCGTTATTGGT
TTAGCAACACTGGCACGTATAAACTAGCTTAATTGACAAGATAAATGAGCTGCTAGCAAC
ATGCGAAAATATGCGGCATCAACGCTTCCACGCAAAAGCCAGCTTGCATTTCCCTCCAGA
CTCCGTTCCAACAAATTGATCAAGTGCACTCCAACTCTCCACAACACAACAAATTTGGTT
AGTTGCTACCAACCCTGCCACCCTCAACTTTTTCTGGGTATATATGCAAGCCTGCGTTGT
ACATGTAGCATACACTCAAGCAACTACACCAACGAACCTGCAGACTCAGCTAGGACAATA
TGGCGTGCAAGTCCAGCCGCAGTCTCCTCCTCTTGGCCACCGTCATGGTCTCCGTCTTCG
CCGCCGCTGCCGCTGCCGCCGCCGCCACCGACTGCTCCCCAGGGGTGGCTTTTCCGACCA
ATCTGCTCGGACACTGCCGCGACTATGTGTTACAGCAGACTTGTGCCGTCTTCACTCCCG
GGTCGAAGTTACCCGAATGGATGACATCCGCGGAGCTGAACTACCCCGGGCAGCCATACC
TCGCCAAGTTGTATTGCTGCCAGGAGCTTGCAGAAATTCCCCAGCAGTGCCGGTGCGAGG
CGCTGCGCTACTTCATGGCGTTGCCGGTACCGTCTCAGCCCGTGGACCCGAGCACCGGCA
ATGTTGGTCAGAGCGGCCTCATGGACCTGCCCGGATGCCCCAGGGAGATGCAACGGGACT
TCGTCAGATTACTCGTCGCCCCGGGGCAGTGCAACTTGGCGACCATTCACAACGTTCGAT
ACTGCCCCGCCGTGGAACAGCCGCTGTGGATCTAGTGATGATAAAATCAGTCGTTCGTGA
ATAAGCATGCATGTTGCGTACATAGGCGTAGGCGTGTGCGTGTGGTGTGCATGTATGCAT
ATGTGAGCTCCGCACGCTCAACATGTGTGGGCTATCTGCTATGAACGAGAATAAAGAGAA
CCATTTTGTGGTTCTTTAATTTCAACTCTATCATCTTGTTTTGTCAAAGGCCAAAGGCAG
ATACAAGTTATTAACCAAGTCCAAACATAATAAAAACAGCTATGACAAAAATAAAGATTA
CAAACAGATCTAAGGCCTGTTCATCGTTGTCTCTAACCTCCACAAGCCAATGGCACGTCT
GGAGCCTAGCTATATGCCTCACCTTTTCTACATCATTGGAGCCATGGAATCATTGAAGAT
CCTTCTCGTTCGTGAGGTATCATAAGGTGGTTGGTGCGGATATGGTCATTGGGTTTTTCT
TCTTTTTTCCCTCAAGCTTTGGTGTTATCTTAGTTATTCTTATGACCCTTAATTAGAAGC
CTCCACGATTTATATATTCATGAATTTATACTAGTACAAATGTCCGTGCGTTGTAACAGG
CTAAAAATATCCTAAAACTTGCTCCATGTGTCAGTTTCTTATATCCGGGTTCTGATAAAC
ATCGGTTATAGTTTATAATATTATTGTTTTTCGGAGTATGACGCGACCTGACGATGGAGT
CTCACGCATACTCGTTCGGAAACCAGGCGGTCTAACGGACGTCTTGCCCGTCGTTGCAGT
ATGAACGCCGCATGACGATGCTCCGGCTCATCGTCCGAAGCCAAATTCAGTGACGAAGGA
GGTCAGAGCGTAGCAGCCGAAGGAAACTGAGCTGCAACTGCCGCGCATGTATCCGCGGGA
GGGCACGCAGATAGTCGACATATTTGATGAGGTGTAGCTATGTAGTATGTAGGTTTTTTT
TATTTTACATGCTTTTGTATGAATATAAAATTCTAGTATGAGATGTTCGGCTATAGTGAT
GCTAATTTGAGGCGTGTCCGGTCAATATCGTCGATGCGTCCGCCAACATTTGAGGGGTCA
TATTTGTCATTCGTAGTTGCAGATGTTTTTATTAACTTAAAATGTTGCCAACAAAATGTA
AGGCGGTACAGTCAAATAATCACAGTGAACCCAAGAGACACCTAGCAGATAACCATTTTT
GAAAGAATATTCATTTTTTTTGTTCAAACGCCATGAATAGTCGCACATAAATTCAATGGA
TGAGCATTGTTTTTTTAATTGGCGGATCCAGCAACAACATTGATAAAGAAAGAAGCAACC
GTCACCAAATCCTCAATGAGCCGCACTGGATGCTCCGTATCCACACATCATTTCCTCCTC
CTGGTACCTCACACCATCATGGCAGATCCCCCGCTGCACAGCCACCACACATCATCTCCA
TTCCTCCTCCTGCTACCTCACACAACCATGACAGATCCCTCGCTGCACAGCCACCACACA
TCATCT