morexGenes - Barley RNA-seq Database

Contig contig_49553
Source Contig contig_49553
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_49553 (8483 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_49553

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_64949	1	869 bp	None	Available	Available	None
MLOC_64948	3	2031 bp	MLOC_64948.1	Available	Available	LOC_Os10g28060.1, FRAME:+3, EVALUE:0.0, 13110.m02375 protein 3-ketoacyl-CoA synthase, putative, expressed
MLOC_64950	1	887 bp	MLOC_64950.1	Available	Available	None
CDS Structure of MLOC_64949

CDS Structure of MLOC_64948

CDS Structure of MLOC_64950

Contig Sequence (8483 bp)

>contig_49553 8483 assembly3_WGSMorex_rbca.fasta
ACGATGGAGACGTATCACATAGCAACGCTAGATCCGAGCTTCCAGCGTTGGTTGTGTCCT
CCCATGATCTCAAGAAGGGCCTTTGTACTAGAGGTGGGTGATGAGATCCTGAGCTTAGAC
ACGGTGGTTTCGACGGAGCTACGACGCCTGCCATGGCAGGCCGGTCTTATCGACAATCCG
ACATATCTTCTGGCCGAATGGCGGGCATTCTCTTTTCTCCCGGCCAATATTCCTGATGGG
AGGCAGCGCTGCTCTAAGATGGAGTATGATGTATTCTACTGGAGCGGTCGCGCCTGAGCA
AGTGATTCGTCCATGACGCCGGCGTTGATTGATTCCATTGATGAGTAGTTGGACCAGGTC
GTGTTTGTTGTTTCTTTGCAGGGTCCTTTTCATAAGATCTAGGATGTACTCTATAATTTT
TAGTTTCTTTGGGGTATTTCATGTAAGATGTACTGCCCAACGCTTTGATCAATGTTGTGT
TGGGTCCTCATGGACCCTTTCCCTTGTTCAAGAAAAATAAAGGACGATAATGCGGAAAGG
GAGGGGTGGGGTTTGTGTTGTTTAGAATCAAGTAAACTTCACTTTTTTAGCCCATAATTG
TTAATGTTGTGATAGCTCGTGCTCCCATTAAATAAAAAATTGCCATATTTACCTCTTAGT
TCGCACATTCCAACAACATTTACCATCTAATTGTTTCTCAACCCACAAAACCTATACTCT
CTTGTTAGGACGACACTCGCTCGTGTGTTGCAAGAGGGGTGTACATAGTTTAGTAATCTT
GTTGTTCAACATTCGGTGATACTTTCTGTAATTAACGTGACCCTCTCATCCAAAGAATGA
CACTCTTTGTAGAGGCACTCTGTGATCCTCCTTTAAAAGAAATCCAAAGAGTGATACTCT
TTGTAATTATCTTGACCCTTCCGTCTAAAAGACGATATTCTCCATAATTAACATGATCCT
CCCGCCCAACATCGATGATAGTTTTCAAAATTTACGTGATCCGCCCATTCAAAAATTGTA
CTCTTCATAATTAACATGAAACCAACAAACATACAAAACCAAACCAAACCACGATGTCAT
ATCACGACCATAGACTTTTCTTTAATAGTAGAGATGTCAAACTGATTGGATAGTCGTACT
CATTGGGGTGCCAAGTCACGTCAAATTTCATAAATGTCATCAAATTCAACCACATTCCAC
AAAATTCCATCAACTTTGTCATGCATGTGTGGCTAGCTGCAGCATGCTTATGTACCATAT
CGGATTCACCTACACCGAATACTAGGCTAAGTTCTTAGCCTAGTCATGTGAACAACCAAC
GTGACAAGTGGTTTTGCAATATCAGTGGGAAAAATAGCAATGTAGAGTAACAGCCATCCC
AAGGTCACAAATACCATAATACCAGTACCTCAAAAAAAAACACCACAATACCACAACTAT
GGGGGTACAATGTGGCAAGATTTTCTAAATACGGTAAACACAACCACAATACCACAACTA
GAAGGATCTACTCTTTTTGGTTAAAATTGCACAAACAAATACTAGTAGTAGAGAAAGTGT
TCGATGCATGTTCCAGCCCGAACTTAATGTTGTTACTTTTTTGTAGTTTTCTTATGCTTG
TACATCTGCAATTATGCATTGTCTTTTCAGGAGGGCACACACGGGCCGAGATGCGCCTAA
AGGTGCCTAACATTTTGAACGAAAGTAGCCAGTTCTTTTTTCTTGTAAAGAAGGCTCCCC
TCCGATTTGCAGTACTCCAGGTTCAGGGCAACAAATACACTTGACTATGGCCGGCCAATT
CAGGAGTGCTGCCAATCCCAGAAATTGAAGACAAAGGCAAGTGGCAGAATTTTCGCCCCT
AGCTACCAAGCCGTTAGTGAGTACTCCTACTAGCCTAGCCATACATTCCCACATGACGAG
CACATGCAACATATATCTGCCGAACACTGCAGCATGGCGAGCACTGTTGGAGTATGAAAC
CACCCGGTCTGCCTCATGCGTCAAGAAACGATCAAAACCACAGCTAGCCCGACCATTAAC
TCCTCGATCGATTGCCCATCAATAGCATGACCCGGCCAACACGGCTCGCGCCTAGCAGCT
TAGCTGCTGCACGTACGCGTGCACAACGCAGGTGCACATGGAAGCGCCGATCTGATTGCT
TTTGTACGTAGCAACTCTTCTTTTGTTAATGCGGCCTGATCCATAGTAGTAGATGGCACG
GTGCGCATGGGCTAGCTGGCGCCTCTCCTGCTCGAGTAGTGTGGTGCATGCACTGCACCG
GATCGTGATCGTGCTCGCGCCCATGGCTATGGGGGCCGGCGCACGCATTAACCCGCTACC
TCCTCAACCAGCCTGCCGCCATTAATCTCCCCCTCCATCCCCTTCCCTCCTCCTATTGGC
CTCCACGTATAAATCCCCGCGCGCCGCGCCGCGAACTCCCACACACCCAAGCTATACTAG
CCAGCGCGACCACCTCGCAGAGCCGTGGCATTCTCGGCAAAGCTTGTTACTTCCATAGCT
GGCTAGCGAGCTCACACGAACCGGCGGTGTGGAGAACCGTGGTAGCTAGGGGTACGGTTC
CATTCACGAGGTACGTGCGAGCGAGCGAGCGTCCTTGTGGAGGCGGAGGCGGAGCCATGG
ACAGGGATCTGTTCAGGACGGTGAAGCAGGGGACGCGGAACCAGGCTAGGCTGCTGTACC
ACCGGCTGGTGTGCCGCCTGCCGCACCTCCTCGCCGTCACGCTGCTCCTCGTAGTGGCCC
CGCCGTTGGTGTCCACGCTGTCGATCGCCGCGCTCTGGAGCGAGGCGCGCGCCAACGCGG
CCGTGCTGGTGGCCGCGTGCGCGGGCTGCGTGGCCGCGGCGTACGCCTACGCCGTGTCGC
GGCCGCGGCCCGTGTACCTGGTGGACATGGCCGGGTACAAGCCCGGGCCGGCGCACGAGG
CGACGCGCGCGCAGGCCATCCGCCAGTTCGGGCTCGCCGGCGGGTTCGACGACGAGAGCA
TGTCGTTCCAGAAGCGGATGATGGAGCGGTCGGGGCTCGGAGAGGCCACGCACTTCCCGG
CGTCGCTCATGAGCATCCCCGTCGACATGTGCCTCCAGACGGCCAGGGACGAGTCCGAGG
CCGTCGTCTTCGGCGTCGTCGACGAGCTGCTGGCCAAGACCGGCGTGCGCGCGCAGGACA
TCGGCGTCGTCATCGCCAACTCCAGCCTCTACAGCCCAACGCCGTCCTTCGTGTCGCTCA
TCGTGAACCGGTACCGCCTCCGCCACGACATCGTCAGCCACAACCTCAGCGGCATGGGCT
GCAGCGCCGGCATCATCGCCATCGACCTCGCCAAGCACCTCCTTCAGGTACCCATCGCTC
TCCGTCCGCCATGCGAATCTCTTCACCTTGTTAACTTAATGCATTGCATGGTGCATGCAC
CACCCCCACCCCACCCATGCACGCACGGAAGACATGGGCATGTACGGAGTATAATCGTGC
GACCCATGCATGCGCAGCATGGCCTAGTACTGTAGTGTACAGTATATGTGGATGCGCAAG
GGAATATCTGAGACATGGACTAATCAATTGGTTAAGCTAGAATTAGACGTCGCATCACGC
ATGTCGTTAGACATGACAGGACTTTGATAGAGAACAAACCCATGACGGTCTGAATTTTCA
AGTACTCCAACATTAAATATCCTTCATTTCTGGTCAGACTCGTATTTATATATGCCTGTT
TAACACTATTTCTGTCTTTATATAATTATATGATAAATTAGTTACGGAGGGAGTAGTAGT
TTTAAATGTTTAGATTACTAAAATAGTGTTTCAAATGCTCCTATATTTATTTAGGGAGGG
AGTAGTAGTTTTCTTTTTTGCGGATGCAATTTTTATTTACGCAGTTTTTTATTGTGGGTT
TATAAGATAACTAACTGCTCATGCAAAACGATATCATGTACACAATTTTATACTCCCTCC
GTTTTTAAATATAAGTCTTTTAAGCGATTTTACTAGGGGACTACATACGGAACAAAATGA
GTGAATCTACGCTCTAAAGCATGTCTATATCCTCTAATGAAATCTCTAAAAGACTTATAT
TATGGAACGGAGGGAGTATAATTTGTATGGACAAATAATTAGATGTTTAACGCCATCGGC
ATATAAGGAATTACAATTACATGAAATCAATACACACAGCCTGATTTATCATGGTTTTTT
TTCAAACAACACATTTTAACATGTTATAAGGAGGTGTTTAGATGGTGGGTGCTTTTGAAG
CTTCGGTGTGTAAATAATACTTATGAACTAAATACCGAAGTACCCTTAAAAATACCAAAA
CTATCAACATAGAGGCAGGAAAAAAAGTGTGTCAACCGTGATTGCTTTAACATACATGCA
TGATTGATTACATAAGTTACAACAAGAGTTAGTCTGCAACCCTGCATGTAGGTTGTGCGA
ATCCTTTTTATGTCATGCCTAGATATGTAATGTCATTTAGCCATTTTCTCATCGATCTCT
GCTTTTTCCATTATGTCATGCCTAGTTATGTTACGAAAACTCGTCTCATTTTACATTTTC
GCTGTAACAACCACTCGGTAGCATAGGAAGTTTCTTAAGGATATAAGATTAATGCATTCA
TGAAGGACCTACCATGCATGTCTGACAATGACAAGTGACCCCGCTAACAGTCGTAGTGGA
GGTTACCCATGCTAATCGAACAACCATGATCAAGGCGTATATCGGAAACGGCGCCATAAA
TCTGCGGACGTTCAGTTTTAAACAATTCAAATCGACTGGCGATGGGCCATCCTCTATGTT
AAGGATGGCCCCGTAAACATAGGATGGTCCAATAATAACTACGGTCATCCCTCGATTCAG
GACAACCCAATTTAAGAAGTTACTCGCAAGATATATAGGCCCATCTCAAGCTGCAGTAGC
CGCTAACTTATGCTTCATCTACGGTTGTAGAAGTATATTGTGTTTTACCCTAGAAAACTA
TATTGTGTTTTAACTTGTTTATTGTAGTCTCGTACAATAAAATAGGCATGAAAGTAGGCA
AAAACATGGTCGGTTAGCTAAACAATAATAACAACATAAAATAGCCAAATCTGGCTGGAC
AGCAGTGCCAAACACAAGCCACTAGCTTAAGAGCCTGGCCTTACAAAAATTACTCCAAGT
TGGGCTATGTCCACGGAACACGTAGCCGGCAAAATTGTAGTGGAAAACCCAGTACATGTA
CATCTGCTCCCCGTAGCCGTGCGTGGCACATGCATGCTCATGCAGCGATGGCACGTTACA
CTGAGAAAAGCTCAGAGCTGCGTATGAATTCAATCGTGCCCACGTGATGTGATGCCAGTG
CAAGCTTCGCCGCGCGCACGGCTCTGAGCCATTCGATCTGACCGCGTAAACTCGACTAAC
TATCCCGGCTTTAATTGTCTGCAACGGAGGACGGTCAGCCATGCACCCATAAAACATATA
GCTCGACCCCCCGTGACCGTTGGGGGTCGATTACAGCCATAATGTGTGCATGCATGCATG
CCAGCATCTGCTGGGGTGGGTGCTGCGCGTGTTACTACACTTGTAGTATTGTACACTTGC
CTAGCTGCCCGTACTGTTCACGGCCCTCTGCTGGGATGGTTGGGCTTGGGTCACGTCGTG
TTCAGAAGAGTTTTGGACCACGCACTGGTGCAGTGCGGCATGGCATGGCATCTGCGACGG
ACGACGGAAACGGTAAAAAAGGCCAGCATCAGTCGGTGCCAGAATGGGACGGACGTGCGG
AAAGAAGAAGGCCGCACGTACCCGTAGTAGCTATCGCCGTAACTCGGCTTCAAGGCCCTC
CAAAACGATCCTCCTCCGGATCAGTGAACGAATCCGGGAGTATCCTACGCCGGCCGGGAA
ACCGATCTGCACACAGTGGTGCACATGCACCTACTTCTATGATTCTCTATGTTGCTCTAC
CATTAGTAGTACTAATTAATTGGGTTTGTTGGTTAATTAATCAATGGAGACGTGGTGCAT
GCATGCAGGTGCACCCGGACACGTATGCGCTGGTGGTGAGCACGGAGAACATCACCCTCA
ACGCCTACCTGGGCAACAACCGGCCGATGCTGGTGACCAACACGCTCTTTCGCGTGGGCG
GCGCGGCGGTGCTGCTCTCGAACCGCCGCCGGGAGCGGGCGCGCGCCAAGTACCAGCTCA
TCCACACCGTGCGCACGCACCGGGGCGCCAGCGACCGGAGCTACGGCTGCGTGACGCAGG
AGGAGGACGAGGCGGGGCACGTCGGGGTGTCGCTCTCCAAGGAGCTCATGTCCGTCGCCG
GCGAGGCGCTGCGCACCAACATCACCACGCTCGGCCCGCTCGTGCTCCCGCTCTCCGAGC
AGCTCCGCTTCCTCGCCACCGTCGTGCTCAAGCGCGTCTTCCGCGCCGACGTCAAGCCCC
ACATCCCGGACTTCACCCTCGCGCTCGACCACTTCTGCATCCACGCCGGCGGCCGCGGCG
TGCTGGACGAGCTGGAGCGCAGCCTCAAGCTCAGCGCCTGGCACATGGAGCCGTCCCGGA
TGACGCTCTACCGCTTCGGCAACACCTCCAGCAGCTCGCTCTGGTACGAGCTAGCCTACT
GCGAGGCCAAGGGCAGGATCAAGAAGGGGGACAGGGTGTGGCAGATCGCATTCGGCTCAG
GCTTCAAGTGCAACAGCGCCGTCTGGAAGGCGCTCAGGCCGGTCGACGCCGTAGCCGTCG
GGGACAGCGGCAGCCCCTGGGCGCAGGACGTCGACGTGCTGCCGGTGCACGTGCCCAAGG
TGGTACCCATCGACGACGACGAGGCGTCCTACAAGACGGCCGCCTAGTTTCTTTCTCATC
CTCCAAGAATCGAAGCGTAAGTGCGTGCACCTGTGATCATCTCTAGCTCGTGTCGATCGC
TGCAGGCCGGGCTTACTATATATACTGATGAAGGGCAATTCTTCTTATACTACCGTGTAA
ATCAATCAATATGAACCGATGAATGAACTGGAGAATTATTATTCCTTGACATGCGTCGCC
GAATCATGGTTAGTAGGCATGGATTGTTGTAAGAATAGTACATTCTGCTGTCTTTGTATT
GAAAACGAACAAAAGTGTTTAGACTTATATGATCCAACAATTACAAAATCCACAAACCGA
CCTTAGCTCAGTTGGTAGAGCGGAGGACTGTAGTCGTTGCAGATAAATCCTTAGGTCACT
GGTTCGAATCCGGTAGGTCGGAATATTTTTTTTAGTGAGATTTCCGCCTATGTCTTTTGA
TAATCAATCATTTTCTAGTATTTTTTTGCTCTTTTTAAACGAAAAAAATCAGTGCCAGAA
ATTCACGTTTCTCTAAAAAACGATGGCAAAATGAATGGTGAAGCCAATCCTTTTTCTCAA
CGATGCAGTTAGCTACTTAGCTGGGAACGTAGCACAGGTATGACATTCCGAGCAGTGGAG
GATAATATGTTTGTTGCTTCAGTTTTCTGCCTGGGCGACTCACAGAAGCTCATGGAAGAA
CATTGAGAAAGGTTCAACACATGCAATTCATTATACTCCCTTCGTTCCTAAATATAAGAC
ATTTTAGAGATTACACTATAGATTACATATGGATGTATATAGACATATTTTAAAATAAAA
AATTTAAATGATCATATAGACATATTTTAAAATGAGTGTATGAACTACATAACGACAACG
GAAATTGCTTGCTCTTTACTCCCTCTGTACCTAAATACTCCCTTTATCCGTAATTACTTG
TCGCACAAATGAATAAAAATGGATGTATCTAGAANNNAAATACATCTAGATACATTTATT
TTTATGACAAATATTTCCGTACGGAGAGTAGGTACATAGGGAGTAGAAAACAAGAACATA
CTGCTGGACTTGTATTGAAACAAGTTGAATGGTTCCCTAATATAAGTACGTTAAAAATTT
TATGGAACAACAAGCCGACCTTAGCTCAGTTGGTAGAGCGGAGGACTGTAGTCGTTGCAG
TTAAATCCTTAGGTCACTGGTTCGAATCCGGTAGGTCGGATATCTTTTGTCTAATTTTTA
AAGAGGCTGTTTGTATATTTTTGGCTTAATTTGAGATGAATCAATGCCAGAAATCTCTTG
TGATATTTTTTAAGTTGATTAAGCAGTTTGCAGTCAAATTCACTTTTGAGATGAATCAGT
GCCAGAAATCAACATTTTATACGAACATTCAGAAAGGAAAGGAGATTTTACAAATATTGG
TATCACCTCACTGATTTCACAAAAGAAAAAAGCACCTTCGTCGCTAAGCTGACTCAGTGA
CTGAATCTCCAAACGCCGTTTTTCTTTGAAAATCTTGTTGTATTATGGAATTTATAGAAC
AGTTGTTGGCTTAAAATTTCCATTCACCCCCATTGCACCAGATAGCATGATCAAATACTC
CATCCGTTCCTAAATNNNNNTCTTTTAAGCGATTTCACTAAAGGTCTACATACGGAGCAA
AATGATTGAATCTATAATCTAAA