morexGenes - Barley RNA-seq Database

Contig contig_49548
Source Contig contig_49548
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_49548 (9653 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_49548

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_64945	1	2912 bp	MLOC_64945.1	Available	Available	LOC_Os05g36010.1, FRAME:+2, EVALUE:0.0, 13105.m03774 protein OsSub47 - Putative Subtilisin homologue, expressed
MLOC_64946	1	618 bp	AK252219.1	Not available	Available	None
CDS Structure of MLOC_64945

CDS Structure of MLOC_64946

Contig Sequence (9653 bp)

>contig_49548 9653 assembly3_WGSMorex_rbca.fasta
TTTTTACATTGATTATATTTTTTACGATCTCTTTTTACGTATAAAATAAGACAAAATTTA
TGAAACGTAAAATTATGGTGCATTGATGTTAAAATAGACGGTGGTGAAGAATAACTATTC
CTCACCGAGGGTGACGAATAGCGCGACCCTGTGTGTGTGTGTGTGTGTGTGTTGTGTTCT
TGTATGTCACGATCTTGATGTATCATGAGCCTTGTTAATATAGTTGGATCATATGGTGTT
CGTCTCTTGCTATACTGATGTGATGAATTGAATCTTTCCCTTTGAGATTTTGCTATGTCG
GATTGAATATTTGATTTTGAGGTCAGTTGTTGTATGTCTTGCATGTGGATACGCGTGATG
AAAATAGGATGTTCTATTGATTCACTTGATATNNNTTTTGATACTCAACTTGCGGATTCC
CGTGGTGACAATGGGGTAATCTATCCATATGGGTTGATACACGTTCTTGTCTTACTTTCT
CTGATAGAAATCTTGGGGTGCCATTTGAAGTTCTTTCTATTGGATTGAATATGATGAATC
TGAAATTATTTGATGCATATCATATAATTTGCTTACAGATACTTGTGGTGACATTGGAGT
NNNNNNNNNNNNNTAGAGTTGATTGATGCGTATCATATGATGTTATTTTAGTATGAACTC
TAGGGCTGTTTGTGACACTTATAGGAATAGATCAATGCATTGACCGGAAAGGACAACTTT
GAGGTGGTTCGACTACCTACAACAATCTCATCTTATGTTATTCGCTACTTATGACTTTTA
GAGTGATTCTTTGTCGCACATTGACAGATGATCATATGAATCTATTATGTTAGCATTGTT
GAGAGATCTGACTAGTGAAAGTACGAACCTTAGGCCCTATTTTAAGCATTGCAATACTGT
TTATGCTCACTTTTAGTACTTGCTACCTTGCTGCTTTATATTTTCAGATTACAAAAACAT
AAATCTACTATCTATATTGCACTTGTATCACCATCTCTTTGTCGAACTCGTGCATCTATA
CAATTAACCATTGTATTGGATGTGTTTGGTACATAAGAGATTTCTTATATTTAATTGTAG
GGTTGTTTTGAGAGAGGCCTTATTCATTCTACACCTCTCACGGATTGATAAACCNNNNGT
CATCCACTTGAGAGAAATTTGTTGATGTCCTACAAAACTCTACACTTGAAGGTCCAACAA
CGTCTACAAGAATAAAGTTACGTAGTAGACATCAGGGCTACACTTGCAAAAACATGGAAA
ATAAGAATGTGTTCAGACAAGAATTGGAAAATGGGAAAACACATAGGCTAGTAAAAAACT
TAAAATTTATTAGCAGTGACATACGCTAGAAAAATGATAAAAATATATTTGTCCACGAAA
ATGAAGTGAGAGGGGGGAGTTTCATGGGGATGAGAGACTTTCCCATATCAAAAACCAAGC
ACAATTATTAAACAAAACGATTCCTCACTCGTGTATGCATGAAAAAGAAAAGAAAAAGAT
AGTGTTGTATCAAAACCAAAATCATAACTCATTCCTACTAAAAATTATCGATGAATATAC
AACCACGCTTAGGATTATGTAAAAACGCAAGTTCACAAATAGTTCTAAAAAAGAACACAA
AATAAACATTTTAAAGTATTTGGAACCATCCAGGGTCGCTCAACCAAACAAAAGAAAAAG
GGCATGTTTGCATCATCATGCTACATATATAGTACCATGAGGCATAACTTTTGGAGGTGC
CTCCTACAACTAGGTCACACCAACAATAACCTTGAACTTAGCCTTGCTGCTTGTCTTGAA
GAAGATGAAGATGCGACCGTCCATCTTTAGGTCAGCCGTTAACCCAAAGAAGCTCGAGTC
CTTCTTGCGGAAAACTATGCCTCCATTACAAGAGGTGGTATATGCAACAATAGTTTTGCC
TCCCCACTGACAAGAGGTGGTATATGCCCTTGCATTGCATGCGACAACCTGCTTTATGAA
AAATATATTACAAAATGTATATATTAACAAAATAGTGAAATATAAAAATAAAAGAACCAA
ACATGCATGTCATAACTGACTTTTTTGAAATGAAAAACATAACATGTAAAAGTGCCGCTG
GATTACCTCTTAAGAGCGAAAATCATCCCATATGTGGATGTTGAAGTCGTGAGCGTCGAC
ATTCTGGCAAAAGTTCTCGCATAGCCTACAAGGCACCTTTTGAAGGAGAAGAAAAATAAG
AAGTAAAAATCACTTTGCTACTGATTGTCTAGCCACACAAAAATATAAGAAGGGCCCCTT
CTAATTATCCTAGAGAAAAAAAAGTAAAAAATAAAATACAAACAAAATAGTTATGAAGCA
TTGTCATTTGCCAACCACCTTGGATAAAAAAATAAGATAACAAGATTCAGACAATTACTA
GTACAGTGTGGAACTACAGTTTAGTAACTCTCCTGCACATGATTATCACATAAGAACAAT
GTAATAAGGTTTAAAAACTACAATTTAGTTAGTTACTAGTATATATTAGTGCGCATCATT
ATGTGATCTAAACTACATAATCTGAACAATTGGTTAACATGCTGAAATGCTGGTAAAGTA
GCCCATCCTAAATTTAGACAAAAAAGAAAACCACTAGATAATCAAAAATTCAAGTAAGAT
AGTTTATGAATAATCAACAAAAAATTTAATGATTGAGCATATTTCAGTGAACTACTTCAG
AACAGTTAAACTCCAGGCCACAAACTCATAGCTATACATAATGGGCCATGTTCATCATAA
GGTAAATTTGCTTTGAAAAGATTCATGATCTTTTCAAGTAGAGTAGCCGAGGAAATCTAA
CATTAAATTCGGAACACATTTCTACAGATCATTTTCGTGCAAACTTGAAGAATTATATTA
CAAAGTGCAATTTTATTTACTTGAGGATTTTAAAAATATTTGGGACAAGAGCTTATTTAA
ACATTTGAAGAACAAGATCATAAAGAAAAAAATTGGAAACAAAAGGAGCATCTAAGAAAA
TATTACCCCCAATTCTTTCTTCACTGATAACCTTAGATCAAAGTACAAAAAGATGAATAC
AGTACAGAGAAAGCACATCACAGATCCTCTAAAAGAAGATTAAAAGAATGTATTCTACAA
AGAGACTGCAAATGTGAGTGTCTTACTAAGATTGCACAACACAAATAGAGGGCAAAACAC
TTAATGTGATATGAAACAACCGTGTAAGTAATTTCCTATTAGTGTACATTCATGAACGAA
GAACTCAAAAAATAAATTTCCATCTAGACAAAAAAATTGTTGCCAAACTACGAGCAAGCA
CAACTATAGTACACACAAATGTTGTAGAAAACTACCTAGGGATGATACAAACCCAAAATT
GCCAACAATGTTCCTTCCCAATAGGTATTCAACCATTCACCACCTAGAAGTTTGGAAAAA
TGATACAAAACCAAAAAACTGCTAAAAAACTCTAACATGTAAATTATTTTGAAACAATGA
TTTCGGAACATTTCTCCTAACACAGAAATTCATCGGGTCCCAAGAAAAAGTACTAGAACT
TGCTCACTGCCAAAACGACAAAACATACTAGAACCCTAGCAACACCTACATATGTTTATC
TAAAACTAAAATCTACACCTGCTCCTAGAACCAAGAACAATTTGGTTCAGACATTCCCCA
GGAAACACTAAAAAACTACATCTGCTCTCAATATGATTTGAGAAAGTGCGATGAATATTC
CCTACAGGTACAATAAAAAAAGATATATAAACAACTAACTTATGCCACTCTAATATCAAG
TTCTTGATGTTTCCTATCTCAAAATAACAAGAATAAAAACAAAGAACCCTAGATACAACC
CGAAAAACAAAGAAAAATGGGGAGAAAAAGGAAGGAGGGCTCACTCTACCGCCGTTCCCT
ACCATCTCCTTCACCTCAAACACTACCAGATCTGGTAGCCTCGCGTTTGAATTCAGTAGC
CTCGCGTTTGAATTCACGCAGCTATAGAAAATGGAAGAACATGGGACGAGGAGAGGAAGA
GGAAGGGGGGAAAAGAGAGTGGCGACTGAAGTGGCAAGTGGGGATTCAATCTCTCGGGGA
GGGGTGGATTGAGTCCAACAGACAAAGTCCCATGCGTCCCGACAAAGTGTAACACACGCA
CGGGACCCAACAACGTGCACGGGCAAACAGGCTCGGCAACGCTATGCGAAACAATATGAG
ATCTCCCGATCACAATTTTTGAAGACAACTGCGTCGATCGATGGTAGACTTAAATGGGAG
TGTCTATTTGACATTTGACTGAAAATAAATTGGGCATCACTCAAGTTTTCTAACCAATAA
TAGAACAACTTAAGTCAAACCAGTGAAACTTATAAAATTACAGTGTATTTCCTGATGAAG
TTACATTGTAAAACACCCACAAATTACAGTCATAGATCCCACGAATTACACTCCAAATCC
TCTAGAATTACACTTGTAAAAACTGATGAACTTACACTGTAAAAACTGATGAATTTACAC
TGTAAATATCAAAAAAGTACCGTGTAAATCAAAGAAGTACAGTGTAAATACTAAAGAAGT
AAAAATACATACTGCATACACAGCGCCTAAAAACCAGAGTTCTCAGCGTGAATCTTAGCG
CCAGATCGGATGAACAGAAAATTGAATGACAACGAATTGAAAAACACTCGACTGTAAAAT
AGCAAAATCGTAAATATAAAGTAACTACTCCCTCCGTTCTCAAATATAAGACATTTTAGA
AATTGTACTATGAACTACATACGGATGTACATAGACATATTTTAAAGTATAAATTCACTC
ATTTTGCTCTATATGTAGTCTTCTAGTAAAATCTCTAAAATGTCTTATATTTTAAAGCAA
AGAAAGTATTTCAGATCTAAATATGAAATAATAATTTTGTTTTAATTATGTAGAGACCGG
ATGTAATGATTAAACATTTCCCTTAATAAAAAGTTCCTTTAAAAAACAATGTTACAGCAC
GTAGCTGGACCCGCAGCGCGGCGGAACGACGAGGCGCCGCGGTTGGGACTCTCGCACAAA
CCCCAACGCCACAGACCCACAGTGGAAACAGCACCAGCGCGCCATGCTTCGACCGCCGGG
TGTGCGCGCGCGCTTTCGAAGCCCCGCACAATTCGGCGAGGGCCCGTCGATGGACCGTGG
CCGCGCGCCGTGCGCGATCCCCAGCCTGTGAATGCGGGCGCTCCTGTCACAGGCCGATCG
CGGGTCACGCTCAAGCGTTACAGCCGTACGTAGTCACCACTCACCAACCGGTGCGCCCTG
AGAACGATATATCTAGCCGGTGCACGCCATGGACCAAAGAGCGGCCACCCCGTCGTCGTC
GAGACCAAAGGTGCCCTACTCTGGCTGCTAATGCATGTCCTGCTGGGGACTGCTGGAGCA
TATCCCGAGAGAGAGAAAGCAGTCCACGTAGCGTGCGACCTTGTATGGCTGGTCAGCAAT
TGCACGAGTGGTTTTCCAACATGCAGCAATGCCTGCCTGCCTGCCAATGAGAAGAAAAAA
ACGTGGAAAATAGCAATGACCATGGATGTATCCATTTCTGTTGGATAGTCATCGCTGTCC
GATTGATTCCGTGCTCCGTGACATATCTCTACATGATTGAACAGACAGGCCACGTTACGG
TTACCCGCCCCGGAATTCTTCTGCTCAAACTTTTTTTCCTTTTTTTTGAAACGCGGATCA
TAGCTAGGTACTACTCGTCGGCAAGATAATTGTTGCGCGCCCGTGCTGAATTTGTTTCTG
CCCTTGTGATCACTATATATTATATTCCACACTCGAGGCATTGGAACATGGCGAGGTGGA
CTAAGAAACAAAAGATTCAACCTGTCCATCGAATTTGCTCCCTTAAAATAGGTCGCTTGT
CGGCTTGACACTACACTTCCCAATGATGAAGTTAGCAATTATATGCATCATGTTGTGCTA
GATTACACGGAACCATTACGAGCAAAACCAACTGACGTTCAACGATAACATGGTTTGCAT
CGTAAGTTCGCAACACGAATCGGCCAAAGTGAGACTGCACACGATCAATGCTAGCTGTAT
GATATTGATACCCTATCATGCACTTGTAAGCATTCGCCAAAATGCTCTTTCCCTGCAGTA
CACGACAGTTTCCAGCGCCACCCATGGCTCCTATGCGCAAACCGCAAGGCGGAAGCAAAC
GACGAGGCCCATGCCGCTTGCCGTGGCTTGTTCAAGACGCCGCAACCACCGAATGCGTCG
GATTCCACGAGCACCGTACCGGCCGGCCATGCAGGTTAAATAGCCATGCGCGCCGTTGCT
GGAGCCACGTCACCCGTTACGACGCCGGTCATCGTACTTCACCTTTCCTGGCGCTCTACG
TACGCGCGCACGTACCTCGTACAATGTGGCCATGGCTGGCTTTGGTGCTGGTCGCGCTGT
ACGTGCGTCCGGCCGCGCCGGCCGATCCCGTGGCGGCGGCGGCGTCGTCCTACATTGTGC
ACATGGACAAGTCGGCCATGCCGACGGGGTTCGCGAGCCACCTGAGCTGGTACGAGTCCA
CGCTCGCCGCGGCCGCACCGGGGGCCGACATGTTCTACGTCTACGACCACGCCATGCACG
GCTTCGCGGCGCGGCTCCCCGCGGAGGAGCTCGACAGGCTCCGGCGCTCCCCGGGGTTCG
TGTCGTGCTACCGCGACGACGCGAGGGTGGTGCGCGACACGACGCACACGCCCGAGTTCC
TGGGCGTCAGCGCGGCCGGTGGCATATGGGAGGCGTCCAAGTATGGCGAGGACGTGATCA
TCGGCGTGGTGGACACGGGCGTGTGGCCCGAGAGCGCGAGCTTCCGCGACGACGGGCTCC
CCCCGGTGCCGGCGCGGTGGAAGGGCTTCTGCGAGTCCGGCACGGCGTTCGACGCGGCCA
AGGTGTGCAACCGGAAGCTCGTCGGCGCGCGCAAGTTCAACAAGGGCCTCATCGCCAACA
ACGTGACCATCAGCGTCAACTCCCCGCGGGACACGGACGGCCACGGCACGCACACGTCGT
CCACAGCCGCCGGCTCGCCCGTGTCGGGCGCGTCCTTCTTCGGCTACGCGCGGGGCATCG
CTCGCGGCATGGCGCCCCGCGCCAGGGTGGCGGTGTACAAGGCACTGTGGGACGAAGGCA
CGCACGTTTCCGACGTACTCGCCGCCATGGACCAGGCCATCGCCGACGGCGTCGATGTGC
TCTCCCTCTCCCTCGGTCTGAACGGCCGGCAGTTATACGAAGACCCCGTTGCAATTGGCG
CGTTCGCCGCGATGCAGCGCGGCGTGTTCGTGTCAACCTCGGCCGGTAACGACGGGCCGG
ACCTCGGGTACCTCCACAACGGCTCACCGTGGGTGCTCACCGTCGCGTCGGGCACGGTGG
ACCGGCAGTTCTCCGGCATCGTCAGGCTCGGCGACGGCACGACCTTCGTTGGTGCATCGC
TATACCCAGGAAGCCCGAGCAGCCTCGGCAATGCCGGGCTCGTGTTCCTCGGCACGTGCG
ACAACGACACGTCGCTCTCCATGAACCGCGACAAGGTCGTGCTCTGCGACGCCACGGACA
CGGACTCCCTCGGGTCCGCGATATCCGCGGCGCAGAATGCCAAGGTGCGTGCCGCGCTGT
TCCTGTCGAGCGACCCGTTCAGGGAGCTCTCGGAGAGCTTCGAGTTCCCGGGCGTGATCC
TGAGCCCGCAGGACGCCCCAGCGCTGCTGCACTACATCCAGAGGAGCCGCACGCCAAAGG
CATCCATCAAGTTCGGGGTGACCGTGGTGGACACGAAGCCCGCGCCGCTGGTGGCGACCT
ACTCGTCGCGTGGCCCGGCGGCGAGCTGCCCGACGGTGCTTAAGCCCGACCTGTTCGCCC
CCGGCTCGCTCATCCTCGCATCTTGGGCGGAGAACGCCAGCGTCGCGAATGTCGGGCCCC
AGTCGCTGTTTGCCAAGTTCAACATCATCTCCGGCACGTCCATGTCGTGCCCACACGCGT
CAGGCGTGGCGGCGCTGCTCAAGGCCGTGCACCCGGAATGGAGCCCCGCGGCGGTGCGGT
CGGCGATGATGACGACGGCTAGCGCGGTGGACAACACCTTCGCACCCATCAAGGACATGT
CCGGCGGCAACCAGAACGGGCCAGCATCACCGCTCGCAATGGGGTCCGGGCACCTCGACC
CGAACCGCGCCCTGAACCCTGGACTGGTCTACGACGCCGGGCCGGGCGACTACATCAAGC
TCATGTGCGCCATGAACTACACCACGGCGCAGATCAAGACCGTGGCGCAGTCGTCGGCCC
CCGTGGACTGCGCAGGCGCGTCGCTCGATCTCAACTACCCATCCTTCATCGCCTTCTTCG
ACACGACCGGAGAGAGGGCGTTCGTGAGGACCGTGACCAACGTGGGCGACGGGCCGGCGG
GGTACAACGCCACCGTGGAGGGACTGGACGGGCTGAAGGTGACCGTCGTGCCGAACAGGC
TGGTGTTCGACGGGAAGAACGAGAAGCAAAGGTACACGGTCATGATTCAGGTTCGGGACG
ACCTATTACCCGACGTAGTGCTACATGGATCATTGACGTGGATGGACGATAACGGCAAGT
ACACGGTGAGGAGCCCCATCGTGGTGACGTCGACGTCTGTGCTATAGGATATGTGCACAG
TTCAGTATATGTATGTTACATGTTTTGTTGAAGAAAAGGTAATCAAGCTGAGATAATAAG
GCAAGTGAAAGCTTGTGAGTGAACAACTGAACATATGTTAAATGGATGTGTCTAGGATTC
AGTGGACTCACATTTGACGAAGTCTTAGTCAAATGACGTCACTTATAGCAGATTCAGCAT
GTTATGTGTCTCGCGAGCCGAGTTGTTTGTGTCTTGTTTTGGGCTGGGCTTTTTCATTTT
GGTGTTGTTTGTTTGTCTCCTTTCGGGAAATAAACCAGTTCTTGTAAAATTACAGCGAAC
TTCCTGTGTTCTGAACATTCGCCTAATCCTTTTGTGGTCTTCAGAATACATTGAGGAGCT
CGTGCAGACGAACGCCAATGGAGGCAATAAGCTGTGTGAGGGAACTTTCTTGAACCCCGG
CTCATGGGGTGCTGCGCTTCTGGCTGCTGGAACAACCTTATCAGCTATGAGGCACATACT
ACATGGGCATGGCAAGATAGCCTATGCATTGGTCCGTCCCCCCGGACATCACGCACAACC
GGACCATGCCGATGGTTACTGCTTTCTGAACAATGCTGGGCTTGCCGTGCATCTGACTCT
GGATTCTGGCCGCGCAAAGGTAGCCGTTGTTGATATTGATGTGCACTATGGGAATGGCGC
TGCAGAGGGATTCTATCGCATGGACAACTTGTTGACAATCTCTCTTCACATGAACCATGG
CTCTTGGGGTCCATCGCATCCGCAGAGTGGCTCGTCTGATGAGATTGGGGAAGGCAGGGG
GCTTGGGTACAATCTCAATATACCTTTGCCTAATGGTAGTGGGGATCTAGGGTATGAATA
TGCAATGAATGAATTGGTCGTCCCGGCGATTGACAAGTTTCAACCTCAGCTTTTGGTTTT
TGTCATTGGTCAAGATTCTAGCATGGTGAGTTGAGTTTGCCTACTTGTTCTCCTTAGTTC
ACCACATGTTCTATTTATCAATCTTGCTAAATCATGTGCAGTTGCATATTCTA