Contig Data
morexGenes
Links



Map Locations of contig_49546 (5938 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_49546

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_64943 4 2584 bp MLOC_64943.1 Available Available LOC_Os04g37619.1, FRAME:-1, EVALUE:0.0, 13104.m03593 protein zeaxanthin epoxidase, chloroplast precursor, putative, expressed





CDS Structure of MLOC_64943






Contig Sequence (5938 bp)

>contig_49546 5938 assembly3_WGSMorex_rbca.fasta
CGGCTGTTGGAGCCAGCGCCTATCCCTGCGCTAAACCAGCCGGCGCGCGCGCTGTAAAAA
CATTTTTTCGACGCGGCGCGAAACGCGGCTGTTGGAGATGCTCTTACGAAGAGAAAATAT
CAAACCACAAGCTACTGGTGCACATACCTAGGGTTAGAACGAATCCTTTGCGTCATGACG
TTCATCATGGTCTTTTTTTTTTTTCGATGATCGTTCATCATGGTCTTAACTGCCTTCGCC
CTCGATTATGCAGCATTAACATGTTTTTCTGTCTTGCAATATGAACACGTGTTAATAGGC
ACAACAATGTAGTATGTATGTACTCCTATTACAGTGGCAACAGCTAAAATTGCCTACCCC
TATTGTACACCCTCAGTTCTTTCCATCGAACTGCGACGTAGTAACTCTGTCAGAAGCTAT
TCAAAACCCTGTTCTGGCATATCTTGATGAGTACAAAAATTACAATTCCTTTTCTTGGCG
GTGATGCAGTGTCGGCTGTTTTTTTACTGAAGAATGCTACAGTGGCTGGTGACAAGGGGT
GGCTGAAGTCCCCACTCATGCTGCCTGCAGAACTTCTCCCCCGCCTCTCGCCGAGTCGTA
TGGGAGCGCGCTGAGCACCTTCACCCGGAACATGGCCTGTAAAATTTGCACAAATTGATC
GGAGTTATAAATTCGGAAGTGGGCATTTCACGACGAATCATGATTGACTGGATCATCAGG
CAGATAGGAATGCAAGGTAAGCTATGGACAACAGGATATGGCTACCTTCTTGTCTGAACC
AAACTCGATGGCATCCGAAGGGTGAAAACGAACCGGGAAGTTTGGAGGTAACCGGTAGCG
CCTACCTTCGTTGCTGGAGATTACGCGCGGAAAAGAATGAGTTAACATTGTAAAGTTTCG
ACTTCTGGAACAAGAGAGTGGAATCAGGCTGCTTCCAGAACTTACTCATTAAACCATGTA
CCGTGCTCGCTTCCGAGATCGGTCAAATAGAAACCCTTGTTCTTGCATGTGATAGTAGCA
TGGATCTCTGATACCTGCAATGAAGTTCAACAGATCAAAGGGAGGTTAAGAAGTTTATTG
ACAAAGGAAAATTCAGCCATGAGTGCGATTTTGAGGATTAAACAAGTTACACTAAAATTT
TGCCACATATCATTTTAATAACTTACTTGTGGCAAGGGCAACGACAACGAAGAATCAGAA
TTGCTCGGATCTGGTTTGCTTCTACCAAATAAAAAAGAGACATTTGTTTATTCCGCAACG
CTTGAGGAAAAAAGTGCTGTATAAAGAGAAATATTGTTGCTATGTACACTTACCCAATAG
AGAGTGTCCTCTGCTCATCCCTGATCAAACGAATGGGCTGCAAGGCGGAGTCATCTCCAG
AGCTCATAGGGAAGAGGTACCACCTGTGAATAGTGTTACTCAAATAACTACTTTTTTTCG
AAGGCGCTGAAAGTAGTATGCAGAACGTGTCTGGTTCAAAATGAAACCAGAGGATAAGCA
ATGAACGTACTCTCCACCCATAGCTTGTTCCAGTGCATCGTCATCCTGAAACCATCGACC
AAGCTGGTCGCTTGCCTGCAGTGGGATGCTAAATGTCAGAGATTGTCAAATAGTTATCTT
GTTTTGGGGTTAGTGTTTACACGTCTTTCAGAAATATACCTTATCAGAAAGCCGGCAACT
TAACGGTCTTCCTTCTAGCTTTGAGCTGCATATAAAAAAGAATATTCATTTCCTATTTCC
ATCATGATTCATAGATGGAGAGTAAGAAGAGACAATTGGGAAGTCCTTCTGTGCATGGTG
AGAAGGCATCTAACCCTAATGAAAATCAAGTTTTCTTCCGTATTTACAGATTCCATTAAA
AAGTACAGCACTATTTACTTGTGAGCTCAAAACGGAAACAAACTTATAGTTCAAAAGAAT
CACCTGTTGCCACCTAAAACCCAGCTCAGCATCAAAGGCATCCCAACCTTGATGAAAAAT
CTGCCGCCAACTCTTCCAGGATGCGGTATCCTCAACTTTGTCAAAAACTACATGTTACAA
ATATCCATATAGTAATTTTAGTCTGCATTGTTTGATAATACTCTTATGAAGCAGGTAATC
TAGTTTTAAACCTTGTTTCATACATCCAATAAAATCACGGGTGGCCAACTCAACAAGCAG
TTTTAATCAGGCCGAGAGACAAAGGCCAACTAAATGTGTTTAGAAGTACAAAGCTGCGTA
GTTCTTGACGTACCGACAAAGGTCCCAGACCCACACCTAGATATGGCCTGTAAGTGGTAG
CCATGATTGCAGCCATTCTTGCCAATCCATGTATGATAGCAACACGTAGCTTTCTCTCCT
TCTCATAACTGCAGACAAACATGCAAACAAATACCATGCCCATCAGTCAACTTACTAAGG
ACATAATAATAGGGCAGCTTTGGAGTTGGATTCTGTTAGTATTCTACTGGATGCTAAAAG
CAATACCATCTGAACAAAACTAACATGCTACGAGTACAACACAAGGAAAGAAATAGTTAC
CTCCTCAAGGAGGAAATAACATCCACAGGAGTTCTAGACTTGACACTCTCTTCCCATGCC
TTCTCAAGCTCTACAGCCAGCTGGTAACCATCCTATAACAAGTGACAAGTTAATTTAGAG
CAGCAAGTAGCTTAGTAACCATCCTATAACAAGTGACAAGTTATTGATCGGCGAGTACTA
TATCTCACAACACCAAGACAAGAAACCTATCCACCATGCTGAATTTTCTGATAATGACAA
TGATATCATAGGCATGGCTAAGTATTTATGTAGTACCTCAATAGCCATGCAGCCACCCTG
TCCCAGATTTGGCTGCATAGCATGTACAGAGTCACCAAGCAAGGTGACACGACCTTTTCC
CCAGTTGATAGTAGGTGGCCGGTCGTATATATCCCGGCGCAGAATCGCTTCCTCTTCAGT
TGCATTTAGCAGATCTATGACATTATCACACCAACCGCTAAATATCTCGAGCAGTCTTTT
CTTTTTGCCTGTCAATATATAGCATTAGTGGATGATAAGCACATAGGTAAGGCCTATCAA
ATATACTTCCCTCATTTGCATCTTAGATTAAATGAGGAAGGTAACATTTAACTAATTTAG
TGCAAAAACTTCCCTCTGGGCACTCACCATTCTCAGGATCGGTACCACCAGCAGGTTCCT
TGTGAAATGCATACCACTGCATTTTACCACCACCAACATCTGAAGAGACGAAATATTGTT
TGTGACCAAGAAACACTCGGTACCTTCAACATAAGAAGATGGGGATCGCATTAGTATTTC
CCATCAGAGGAAATGACAGTACTCTTTCTCCAGAGTTGAGTCACATACCCTACTGTGTCA
ATATCAGGAGGCACAAAGTCTGCAATTCCGGTGTAGCAAGTGTATTCTGAATAAGATGCG
TCTGTTTCGCCAAAAAGTGACTTCCTCACCTATGCAGTGAAGTAAATATTAATTCAGGTC
CCTCAAAAAAAAATCTCTATTAAGGTCAACTTCGATCCTGTTTTTGAAAGGGCAACTGAC
TGCATTACCTTTGACCATATGCCATCTGCTCCAACCAAGAGATCACCTTCAAATTTCCGC
CCATCCTCCAATATTGCAGTAACCTGCAGTTATCCGGCGAATGTTACAAACAGACATTAG
ACTTTTTCCATCGCATTGAGAGCCAGTTTTGCACCGAGATGGCCATTCAAAGACAACTGA
TGACTCACCTTGTTGCCATCATCGGTAAAGTCAACAACGTGGCAGTCATTCATTATAGCA
TCGTCGCCAACGGCACGAGCAAGAATCTGCTGCAGCGTCATGCGGCTAATGACCCTTGTG
ACCGGGAGCCCCCTATCAGCCGCAGGAGTGAAGGTGTCAAACTTGATGTACCTGCATACG
AACATGGCTCAGTCAAATGAATCTTGAAGCTGATCAACAAGCAAATTCAAAAAATACAGC
AGAATAAGCGCAAGTAGCGGACTCTACTTGTTTAACTATACAAATCAACATCGATAAGTA
AGAAACAAATTACATTATAGTATCATTCATTCGCTGGTGTTGCTATCATTGACTAATTGT
AGGTCTACTACGATTAACCATTCTAGTGTAAGCTGTACTAATTGCTATGGTATGACGTAC
TAACTGCTACCAATCGAGTTGTACCAAGTGTCGACGCTGTACTGTAGTACGTGAAGAGAG
CGTTCTTTACGCTAAATTGCACAAGAAGCTGATGCCAGAGAGAAATTCCAACATTTCTAT
ACTAGGCGCTAGGCACAAGCAAACAAATCACTGGTAGTGGTATAAGAATCAGGCAGAAGC
AGTTGCCTGCTCTTGTCGGTGGGCCGTGATTGATTACCAGGAGCCTGAGATGCCGTCGAC
GATCCCGTTGACGCGGTCGCCGGTGATGCACCCGGCGTCCATGATCTGGTCGGCGGCGGG
CATGTCGACGGCCTCGAGCACGGCGAGCGCGTTGCTCTGCAGCTGGATGGGGCCCCGGTA
CTTGCCCTCCCCGCGGACGGCGCTCATGTCCTTCTCCAGCACGAGCACCTGGAAGCCCTT
CCGCCTGGCCGCGAGCGCGAAGACGAGGCCGCCGATCCCCCCGCCGGCGACCAGGACGCG
CGGCTTGGGCTCCGGCGCGTGCATTGCCGCGTCGTCAACGACCTCCGCAGCGCACCTCAC
GGGGCCAGAGAGGCGAAGCCCGCGCCCATACGGCGCGCGCTGGGAGTGGAGGGCGTGTAA
GCCGATTAGTGTCCGGGAGGAGGAGGAGGAGGGGGTGACGGGCGGGGCGGAGATGGCCGT
GCCCGCGCGAGAGACTCGCGTGCAGCTTGGCATGACGAACCGACGAGCCAGGAAGTGTAA
GCTTGGGTTGTGATGAGCAGAGTATGCTCGTTGCCTGTCAGTCAGTGCTGAGTTGACTGA
CTCTCCTCTGAAAGGTCTCGGTGGACGGAGCATGCTCTGGAGCGGAAGATGTTCCCGGGA
GGCTGGCTATTTTAGCCTGGCGATCGGGATGGGGCGGCTACATGGGCCGGGGATGAGACC
GCCGGGCGCCGGTACTCGCGAACACACACAAAAATGGACTCATTGCCTGATTGGGGCAGA
GGGGGGGCTGTACCGGCGCGCCGGGATAACGAAATTTATGTATGTATGGGGCCGGCCGAC
ACGACGGACCGGGCACGGAAAAGGGGGGGAATGAATCGAATTTCTCTTGTAGCGGAGTCC
CGTAGTGGCGAGAGAAAAGGAGTCGAGGATTGGTGCCCTCCTCGGTGCGTTTGGGCGGCC
GTTGCCCGTGTGGGCACGCCTCCGGGCCAATCGGAAGCCGCCGCGCGCAGGCTCTTTGCT
TTTCGTTTCCATTGTTGCCCGGCCGGGTGGGGCGGGGGGCCCTCGTGGGCGGCGCCCGTC
TGGTCTGGGTCTGGGTGCGTGTAGTGGTGGTCGTGGGATCAGCAGAGAACTACTCCTCCT
CCTACTAGTAGCGCGAGCGTACGGGCAAGTGGAATTACACGCACGCACGCAGTGAAATCG
TTTGCTCAGGTAACGACCAGGACGCGACCGCGGAACTGTCAAGCGCGCACGCTCCCTGCA
GCCCAGGACAGACACAGCGGCAACAAAGTGACAGAGAGAGAGAGAGAGGCTGAGCAGTTC
ATAGGCAGAGCAGAGCTCATCGACATGGACAGGCGTACGTACCATGAGCCGGAGATGCCG
TCGACGAGGCCGTTGATGCGGTCGCCGGTGACGCAGCCCTCGCGCATGACCTCCTCGGCC
ACGGACATGTCGATGGCCTCCAGGGCCGCCAGCGCGTTGCTCTGGATCTGGATGGGGCCG
CGGTACTGCCCCTCCCCGCGCACCGCGCTGATGTCCCGCTCGAACACCGTCACGTCGTAA
CCCTTGCGCCGGGCCGCCAGCGCCAGCACCAGCCCGCCGATGCCGCCGCCCGCCACCA